Wall clock time and date at job start Tue Mar 31 2020 03:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00060 * 2 1 4 4 H 1.48499 * 109.47020 * 240.00271 * 3 2 1 5 5 H 1.48494 * 109.47019 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46833 * 120.00515 * 3 2 1 7 7 C 1.38952 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00140 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00051 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00270 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99956 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00238 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47289 * 179.97438 * 12 10 9 14 14 C 1.48550 * 111.00101 * 285.42134 * 13 12 10 15 15 C 1.54378 * 104.59514 * 200.96003 * 14 13 12 16 16 H 1.09003 * 117.60139 * 244.71755 * 15 14 13 17 17 C 1.52996 * 118.13343 * 89.19377 * 15 14 13 18 18 H 1.09007 * 117.44084 * 15.98108 * 17 15 14 19 19 Br 1.96596 * 117.44691 * 160.68444 * 17 15 14 20 20 C 1.54444 * 105.07843 * 23.94904 * 15 14 13 21 21 H 1.09005 * 121.80249 * 222.95481 * 20 15 14 22 22 C 1.48560 * 110.99883 * 169.99802 * 13 12 10 23 23 H 0.96994 * 119.99918 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99673 * 0.02562 * 9 7 2 25 25 H 1.09005 * 109.47511 * 60.00276 * 12 10 9 26 26 H 1.09005 * 109.47405 * 300.00022 * 12 10 9 27 27 H 1.09008 * 110.41398 * 319.73707 * 14 13 12 28 28 H 1.09000 * 110.41443 * 82.17889 * 14 13 12 29 29 H 1.09002 * 110.41441 * 277.82232 * 22 13 12 30 30 H 1.09002 * 110.41248 * 40.14533 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1983 -5.9796 -0.0016 14 6 2.8245 -6.1440 -1.3386 15 6 3.3422 -7.5984 -1.3495 16 1 4.4198 -7.7504 -1.4110 17 6 2.3966 -8.6971 -1.8388 18 1 1.5146 -8.3877 -2.3997 19 35 3.2007 -10.4014 -2.3988 20 6 2.4724 -8.3422 -0.3125 21 1 2.9029 -9.0478 0.3981 22 6 1.5060 -7.2719 0.2387 23 1 -0.4850 0.8400 0.0004 24 1 0.3534 -2.3906 -0.0005 25 1 0.6174 -4.9206 -0.8914 26 1 0.6166 -4.9209 0.8886 27 1 2.0846 -5.9980 -2.1256 28 1 3.6521 -5.4450 -1.4594 29 1 1.3408 -7.4220 1.3056 30 1 0.5587 -7.3016 -0.2997 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886786557.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:27 Heat of formation + Delta-G solvation = 10.683460 kcal Electronic energy + Delta-G solvation = -15132.486416 eV Core-core repulsion = 12396.297141 eV Total energy + Delta-G solvation = -2736.189275 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 288.021 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.88269 -37.91529 -34.38605 -33.66170 -31.23929 -30.34311 -28.45303 -27.53009 -24.69537 -22.45048 -20.83831 -20.33645 -19.13743 -17.85757 -16.41099 -15.79639 -15.21535 -14.60329 -14.42870 -13.86518 -13.57433 -13.34972 -13.06385 -12.62772 -11.98936 -11.67085 -11.51893 -11.43915 -11.28971 -11.05633 -10.83095 -10.72004 -10.44537 -10.21984 -9.92244 -9.67559 -9.48996 -8.55701 -8.06994 -7.96186 -6.42117 -3.82988 1.35307 3.08231 3.19942 3.25685 3.30035 3.85834 3.92274 4.17722 4.34754 4.44795 4.62010 4.90871 5.05762 5.16984 5.22984 5.36352 5.48475 5.66446 5.71262 5.79040 5.93255 5.97310 6.24545 6.28818 6.96078 7.10427 7.54686 8.05352 8.61266 9.17709 9.53724 10.05675 10.75652 Molecular weight = 288.02amu Principal moments of inertia in cm(-1) A = 0.062185 B = 0.003029 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.162417 B = 9242.164887 C = 9410.468145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.577 6.577 12 C 0.034 3.966 13 N -0.482 5.482 14 C 0.065 3.935 15 C -0.131 4.131 16 H 0.127 0.873 17 C -0.102 4.102 18 H 0.134 0.866 19 Br -0.118 7.118 20 C -0.137 4.137 21 H 0.130 0.870 22 C 0.057 3.943 23 H 0.272 0.728 24 H 0.392 0.608 25 H 0.052 0.948 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 -19.471 -3.885 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.460 6.460 12 C -0.097 4.097 13 N -0.206 5.206 14 C -0.063 4.063 15 C -0.151 4.151 16 H 0.145 0.855 17 C -0.198 4.198 18 H 0.152 0.848 19 Br -0.037 7.037 20 C -0.157 4.157 21 H 0.148 0.852 22 C -0.071 4.071 23 H 0.082 0.918 24 H 0.225 0.775 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.125 0.875 29 H 0.111 0.889 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.954 -19.743 -3.658 20.174 hybrid contribution -1.082 1.013 -0.546 1.580 sum 0.871 -18.730 -4.205 19.215 Atomic orbital electron populations 1.69601 1.05942 1.28265 1.50613 1.25254 0.95628 0.99705 0.97320 0.85919 0.78764 0.80459 0.79091 1.19910 1.20991 1.19872 1.19650 0.93340 0.82206 1.47690 0.87959 1.41846 1.09157 1.04553 1.64602 1.19659 0.88400 0.84418 0.84577 1.90515 1.13619 1.86944 1.54939 1.22072 0.94083 0.91716 1.01871 1.65302 1.26839 1.00917 1.27568 1.22779 1.00336 0.93391 0.89783 1.23839 0.98208 0.91630 1.01453 0.85536 1.26378 1.02959 0.91078 0.99385 0.84779 1.97334 1.84295 1.30446 1.91586 1.24343 1.01832 1.00686 0.88827 0.85199 1.22744 0.94616 0.88075 1.01663 0.91825 0.77521 0.93030 0.89046 0.93791 0.87466 0.88898 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.16 5.29 -10.97 -0.06 -14.22 16 10 C 0.44 10.35 7.63 -10.99 -0.08 10.27 16 11 O -0.58 -15.44 14.80 5.55 0.08 -15.36 16 12 C 0.03 0.59 5.32 -4.97 -0.03 0.57 16 13 N -0.48 -7.77 4.98 -231.41 -1.15 -8.92 16 14 C 0.06 0.98 5.72 -2.19 -0.01 0.97 16 15 C -0.13 -1.59 6.81 -89.14 -0.61 -2.20 16 16 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 17 C -0.10 -1.06 6.73 -24.63 -0.17 -1.22 16 18 H 0.13 1.31 8.14 -51.92 -0.42 0.89 16 19 Br -0.12 -1.21 34.19 -68.01 -2.33 -3.54 16 20 C -0.14 -1.50 7.12 -87.04 -0.62 -2.12 16 21 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16 22 C 0.06 0.69 6.28 -2.18 -0.01 0.67 16 23 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 25 H 0.05 0.80 7.77 -51.93 -0.40 0.40 16 26 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 27 H 0.04 0.63 7.75 -51.92 -0.40 0.23 16 28 H 0.11 1.92 7.24 -51.93 -0.38 1.55 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.51 7.99 -51.93 -0.42 0.10 16 LS Contribution 278.73 15.07 4.20 4.20 Total: -1.00 -30.03 278.73 -8.86 -38.89 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.54 Total: 7.70 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.77 Total: -1.00 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.49 Total: -46.83 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.08 Total: -15.36 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 35 Polarization: -1.21 SS G_CDS: -2.33 Total: -3.54 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.03 -8.86 -38.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886786557.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.574 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds