Wall clock time and date at job start Tue Mar 31 2020 03:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47517 * 2 1 4 4 C 1.50700 * 109.47486 * 239.99577 * 2 1 3 5 5 H 1.07999 * 120.00331 * 240.00504 * 4 2 1 6 6 C 1.37881 * 119.99522 * 59.99974 * 4 2 1 7 7 N 1.31516 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99985 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46744 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47186 * 120.00078 * 8 6 4 11 11 H 1.48493 * 109.47109 * 240.00317 * 8 6 4 12 12 C 1.53001 * 109.47084 * 119.99977 * 2 1 3 13 13 N 1.46905 * 109.46953 * 299.99941 * 12 2 1 14 14 C 1.46907 * 110.99744 * 179.97438 * 13 12 2 15 15 C 1.53005 * 109.46874 * 179.97438 * 14 13 12 16 16 H 1.08996 * 109.47108 * 305.00261 * 15 14 13 17 17 O 1.42905 * 109.46711 * 65.00309 * 15 14 13 18 18 C 1.52996 * 109.47034 * 184.99834 * 15 14 13 19 19 C 1.53000 * 109.47026 * 175.00107 * 18 15 14 20 20 O 1.42905 * 110.45387 * 64.30473 * 19 18 15 21 21 C 1.54508 * 110.51001 * 186.90431 * 19 18 15 22 22 C 1.54478 * 104.05975 * 118.78690 * 21 19 18 23 23 O 1.44426 * 104.80787 * 23.97594 * 22 21 19 24 24 C 1.44428 * 105.27466 * 319.49289 * 23 22 21 25 25 H 1.08998 * 109.46852 * 300.00152 * 1 2 3 26 26 H 1.08999 * 109.46513 * 59.99961 * 1 2 3 27 27 H 1.08997 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47414 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47016 * 300.00058 * 3 2 1 30 30 H 1.09003 * 109.46906 * 59.99634 * 3 2 1 31 31 H 0.97003 * 119.99966 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.47392 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47435 * 59.99680 * 12 2 1 34 34 H 1.00895 * 110.99960 * 56.05055 * 13 12 2 35 35 H 1.08999 * 109.46697 * 60.00167 * 14 13 12 36 36 H 1.08992 * 109.47121 * 300.00194 * 14 13 12 37 37 H 0.96695 * 113.99981 * 59.99624 * 17 15 14 38 38 H 1.09003 * 109.46686 * 55.00453 * 18 15 14 39 39 H 1.09003 * 109.47225 * 295.00518 * 18 15 14 40 40 H 0.96697 * 113.99904 * 181.90558 * 20 19 18 41 41 H 1.08999 * 110.51393 * 237.42923 * 21 19 18 42 42 H 1.08995 * 110.51384 * 0.02562 * 21 19 18 43 43 H 1.08998 * 110.37696 * 142.81296 * 22 21 19 44 44 H 1.09006 * 110.37568 * 265.03533 * 22 21 19 45 45 H 1.09007 * 110.36954 * 281.67773 * 24 23 22 46 46 H 1.08993 * 110.37552 * 159.34160 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1475 -2.2863 -3.6036 10 1 1.1680 -1.5867 -4.8165 11 1 3.1473 -0.1858 -4.8159 12 6 2.0400 -0.7213 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0208 -0.6952 3.6704 15 6 1.4923 0.0535 4.8956 16 1 1.7822 1.1023 4.8335 17 8 0.0672 -0.0453 4.9360 18 6 2.0824 -0.5646 6.1647 19 6 1.6539 0.2598 7.3803 20 8 0.2363 0.1987 7.5505 21 6 2.3740 -0.2383 8.6533 22 6 3.1889 0.9856 9.1267 23 8 2.4996 2.1260 8.5696 24 6 2.1189 1.7257 7.2351 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 0.7095 1.1617 -3.4844 32 1 3.1300 -0.7209 1.2495 33 1 1.6766 -1.7489 1.2493 34 1 0.5438 0.0413 2.4402 35 1 3.1107 -0.6954 3.6873 36 1 1.6570 -1.7225 3.6869 37 1 -0.2627 -0.9526 4.9916 38 1 3.1702 -0.5697 6.0943 39 1 1.7205 -1.5871 6.2731 40 1 -0.0941 0.7273 8.2897 41 1 1.6488 -0.5311 9.4126 42 1 3.0356 -1.0715 8.4166 43 1 3.1942 1.0401 10.2153 44 1 4.2088 0.9332 8.7453 45 1 2.9741 1.7877 6.5619 46 1 1.3022 2.3486 6.8706 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905284463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:30 Heat of formation + Delta-G solvation = -154.666043 kcal Electronic energy + Delta-G solvation = -23974.737469 eV Core-core repulsion = 20478.021818 eV Total energy + Delta-G solvation = -3496.715652 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 5.99 seconds Orbital eigenvalues (eV) -40.41254 -37.98044 -36.53752 -35.89938 -33.52522 -32.49389 -31.06717 -30.33334 -28.08789 -25.71059 -25.51063 -25.14774 -23.61565 -22.78131 -21.32713 -20.61528 -18.39688 -17.63331 -16.88082 -16.39877 -16.04202 -15.70540 -15.47125 -14.98298 -14.67233 -14.54532 -14.32616 -14.01820 -13.50993 -13.41852 -12.82245 -12.69699 -12.42451 -12.08016 -12.03666 -11.83845 -11.64541 -11.54491 -11.16790 -11.13049 -10.96480 -10.84403 -10.63149 -10.58048 -10.51613 -10.14845 -10.05055 -9.89893 -9.69110 -9.35457 -8.98939 -8.58643 -8.27309 -7.68261 -5.89183 -3.99730 3.31153 3.39441 3.42677 3.57168 3.91838 4.09280 4.30142 4.41457 4.46426 4.58300 4.71501 4.77846 4.83888 5.18171 5.24592 5.25494 5.30141 5.36086 5.37102 5.45641 5.48369 5.61992 5.63962 5.74321 5.87376 6.17830 6.34907 6.40478 6.43761 6.75404 6.92674 7.12276 7.20884 7.42018 7.44617 7.50103 7.74887 7.79146 7.82477 7.86110 8.04414 8.24937 8.37930 8.58374 9.02070 9.65192 11.11285 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.038751 B = 0.002867 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.385181 B = 9763.386093 C = 9805.337570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.069 3.931 3 C -0.119 4.119 4 C -0.507 4.507 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.075 3.925 13 N -0.682 5.682 14 C 0.026 3.974 15 C 0.111 3.889 16 H 0.104 0.896 17 O -0.542 6.542 18 C -0.135 4.135 19 C 0.113 3.887 20 O -0.534 6.534 21 C -0.187 4.187 22 C 0.042 3.958 23 O -0.376 6.376 24 C 0.014 3.986 25 H 0.013 0.987 26 H 0.083 0.917 27 H 0.018 0.982 28 H 0.017 0.983 29 H 0.074 0.926 30 H 0.020 0.980 31 H 0.257 0.743 32 H 0.054 0.946 33 H 0.011 0.989 34 H 0.345 0.655 35 H 0.071 0.929 36 H 0.022 0.978 37 H 0.367 0.633 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.374 0.626 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.071 0.929 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 -2.101 22.356 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.068 3.932 3 C -0.177 4.177 4 C -0.545 4.545 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.053 4.053 13 N -0.315 5.315 14 C -0.105 4.105 15 C 0.051 3.949 16 H 0.122 0.878 17 O -0.346 6.346 18 C -0.173 4.173 19 C 0.072 3.928 20 O -0.339 6.339 21 C -0.225 4.225 22 C -0.035 4.035 23 O -0.295 6.295 24 C -0.062 4.062 25 H 0.032 0.968 26 H 0.102 0.898 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.093 0.907 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.029 0.971 34 H 0.165 0.835 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.213 0.787 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.221 0.779 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.774 -1.064 21.749 21.951 hybrid contribution 0.010 -1.881 -0.428 1.930 sum 2.784 -2.945 21.321 21.703 Atomic orbital electron populations 1.21831 0.98460 0.98330 1.00416 1.18089 0.92158 0.93041 0.89891 1.21639 0.97669 0.98231 1.00141 1.21158 1.31068 1.11780 0.90541 0.93020 1.24894 0.95077 0.94961 0.98689 1.69851 1.36895 1.22754 1.22780 0.86606 0.78594 0.79704 0.83457 1.19994 1.21172 1.21109 1.22161 0.98752 0.94337 0.90078 1.60556 1.17197 1.53094 1.00681 1.22642 1.00639 0.95226 0.91945 1.21956 0.81360 1.00792 0.90795 0.87830 1.86646 1.19567 1.31926 1.96438 1.22325 1.01327 0.99902 0.93737 1.22395 0.82302 0.94171 0.93979 1.86662 1.19486 1.72555 1.55207 1.23739 1.00863 0.99282 0.98620 1.23426 0.95765 0.84797 0.99538 1.89168 1.75863 1.36386 1.28062 1.24325 1.01112 0.95715 0.85094 0.96844 0.89843 0.96311 0.96397 0.90739 0.96057 0.93248 0.92769 0.97085 0.83523 0.91036 0.95985 0.78675 0.89517 0.90513 0.77876 0.89811 0.89651 0.89023 0.92014 0.91042 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 7.92 37.16 0.29 -2.92 16 2 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 3 C -0.12 -2.96 8.09 37.16 0.30 -2.66 16 4 C -0.51 -13.80 8.01 -34.44 -0.28 -14.08 16 5 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 6 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -24.77 9.35 55.43 0.52 -24.25 16 8 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.08 1.59 4.59 -3.82 -0.02 1.57 16 13 N -0.68 -12.30 5.71 -113.77 -0.65 -12.95 16 14 C 0.03 0.36 5.36 -3.82 -0.02 0.34 16 15 C 0.11 1.32 3.05 -26.73 -0.08 1.24 16 16 H 0.10 1.35 6.86 -51.93 -0.36 1.00 16 17 O -0.54 -7.12 11.35 -54.51 -0.62 -7.74 16 18 C -0.13 -1.23 3.98 -26.73 -0.11 -1.34 16 19 C 0.11 1.01 1.11 -89.05 -0.10 0.91 16 20 O -0.53 -5.29 11.52 -54.51 -0.63 -5.92 16 21 C -0.19 -1.32 6.52 -25.16 -0.16 -1.48 16 22 C 0.04 0.31 7.63 37.93 0.29 0.60 16 23 O -0.38 -3.91 11.65 -35.23 -0.41 -4.32 16 24 C 0.01 0.14 5.70 37.93 0.22 0.36 16 25 H 0.01 0.28 6.57 -51.93 -0.34 -0.06 16 26 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 2.02 6.07 -51.93 -0.32 1.71 16 30 H 0.02 0.48 7.60 -51.93 -0.39 0.09 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.34 6.42 6.33 -39.29 -0.25 6.17 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.37 3.97 9.04 45.56 0.41 4.38 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.37 2.73 9.04 45.56 0.41 3.14 16 41 H 0.08 0.56 8.00 -51.93 -0.42 0.14 16 42 H 0.08 0.52 7.73 -51.93 -0.40 0.12 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.67 7.58 -51.92 -0.39 0.28 16 46 H 0.11 1.11 8.09 -51.93 -0.42 0.69 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -30.12 354.58 -7.86 -37.98 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.55 Total: 9.82 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 0.16 Total: -14.19 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.13 Total: -37.20 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -1.66 Total: -17.99 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.12 -7.86 -37.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905284463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.689 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.99 seconds