Wall clock time and date at job start Tue Mar 31 2020 03:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47517 * 2 1 4 4 C 1.50700 * 109.47486 * 239.99577 * 2 1 3 5 5 H 1.07999 * 120.00331 * 240.00504 * 4 2 1 6 6 C 1.37881 * 119.99522 * 59.99974 * 4 2 1 7 7 N 1.31516 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99985 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46744 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47186 * 120.00078 * 8 6 4 11 11 H 1.48493 * 109.47109 * 240.00317 * 8 6 4 12 12 C 1.53001 * 109.47084 * 119.99977 * 2 1 3 13 13 N 1.46905 * 109.46953 * 299.99941 * 12 2 1 14 14 C 1.46907 * 110.99744 * 179.97438 * 13 12 2 15 15 C 1.53005 * 109.46874 * 179.97438 * 14 13 12 16 16 H 1.08996 * 109.47108 * 305.00261 * 15 14 13 17 17 O 1.42905 * 109.46711 * 65.00309 * 15 14 13 18 18 C 1.52996 * 109.47034 * 184.99834 * 15 14 13 19 19 C 1.53000 * 109.47026 * 175.00107 * 18 15 14 20 20 O 1.42905 * 110.45387 * 64.30473 * 19 18 15 21 21 C 1.54508 * 110.51001 * 186.90431 * 19 18 15 22 22 C 1.54478 * 104.05975 * 118.78690 * 21 19 18 23 23 O 1.44426 * 104.80787 * 23.97594 * 22 21 19 24 24 C 1.44428 * 105.27466 * 319.49289 * 23 22 21 25 25 H 1.08998 * 109.46852 * 300.00152 * 1 2 3 26 26 H 1.08999 * 109.46513 * 59.99961 * 1 2 3 27 27 H 1.08997 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47414 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47016 * 300.00058 * 3 2 1 30 30 H 1.09003 * 109.46906 * 59.99634 * 3 2 1 31 31 H 0.97003 * 119.99966 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.47392 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47435 * 59.99680 * 12 2 1 34 34 H 1.00895 * 110.99960 * 56.05055 * 13 12 2 35 35 H 1.08999 * 109.46697 * 60.00167 * 14 13 12 36 36 H 1.08992 * 109.47121 * 300.00194 * 14 13 12 37 37 H 0.96695 * 113.99981 * 59.99624 * 17 15 14 38 38 H 1.09003 * 109.46686 * 55.00453 * 18 15 14 39 39 H 1.09003 * 109.47225 * 295.00518 * 18 15 14 40 40 H 0.96697 * 113.99904 * 181.90558 * 20 19 18 41 41 H 1.08999 * 110.51393 * 237.42923 * 21 19 18 42 42 H 1.08995 * 110.51384 * 0.02562 * 21 19 18 43 43 H 1.08998 * 110.37696 * 142.81296 * 22 21 19 44 44 H 1.09006 * 110.37568 * 265.03533 * 22 21 19 45 45 H 1.09007 * 110.36954 * 281.67773 * 24 23 22 46 46 H 1.08993 * 110.37552 * 159.34160 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1475 -2.2863 -3.6036 10 1 1.1680 -1.5867 -4.8165 11 1 3.1473 -0.1858 -4.8159 12 6 2.0400 -0.7213 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0208 -0.6952 3.6704 15 6 1.4923 0.0535 4.8956 16 1 1.7822 1.1023 4.8335 17 8 0.0672 -0.0453 4.9360 18 6 2.0824 -0.5646 6.1647 19 6 1.6539 0.2598 7.3803 20 8 0.2363 0.1987 7.5505 21 6 2.3740 -0.2383 8.6533 22 6 3.1889 0.9856 9.1267 23 8 2.4996 2.1260 8.5696 24 6 2.1189 1.7257 7.2351 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 0.7095 1.1617 -3.4844 32 1 3.1300 -0.7209 1.2495 33 1 1.6766 -1.7489 1.2493 34 1 0.5438 0.0413 2.4402 35 1 3.1107 -0.6954 3.6873 36 1 1.6570 -1.7225 3.6869 37 1 -0.2627 -0.9526 4.9916 38 1 3.1702 -0.5697 6.0943 39 1 1.7205 -1.5871 6.2731 40 1 -0.0941 0.7273 8.2897 41 1 1.6488 -0.5311 9.4126 42 1 3.0356 -1.0715 8.4166 43 1 3.1942 1.0401 10.2153 44 1 4.2088 0.9332 8.7453 45 1 2.9741 1.7877 6.5619 46 1 1.3022 2.3486 6.8706 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905284463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:25 Heat of formation + Delta-G solvation = -178.070830 kcal Electronic energy + Delta-G solvation = -23975.752377 eV Core-core repulsion = 20478.021818 eV Total energy + Delta-G solvation = -3497.730559 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 287.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11244 -39.15152 -38.00407 -36.75577 -35.11722 -33.37272 -32.70114 -31.19183 -29.06100 -27.50993 -27.26401 -26.78229 -24.79606 -23.77210 -22.28794 -21.33705 -20.29337 -18.32099 -18.06281 -17.57234 -17.25644 -16.91768 -16.61209 -16.34086 -15.75869 -15.43099 -15.35247 -15.31456 -14.90561 -14.31941 -14.21819 -14.04053 -13.80332 -13.43824 -13.28612 -13.01022 -12.84355 -12.74930 -12.49048 -12.48330 -12.44642 -12.14345 -12.10016 -12.07134 -11.91125 -11.66575 -11.31952 -11.30525 -11.10597 -10.62193 -10.57440 -10.38538 -10.34988 -9.14017 -7.96580 -6.14015 1.41198 1.44208 1.53742 2.46328 2.91485 3.19950 3.25339 3.32760 3.53837 3.73287 3.76247 3.86012 4.09370 4.20800 4.23318 4.25966 4.42702 4.55991 4.59267 4.64011 4.73912 4.75884 4.79099 4.80754 4.88222 4.88663 5.01803 5.05525 5.08614 5.18203 5.26656 5.30020 5.43603 5.53513 5.69956 5.76383 5.76941 6.17741 6.26436 6.34835 6.49924 6.65803 6.84664 6.95961 6.97026 7.53812 9.01800 Molecular weight = 287.19amu Principal moments of inertia in cm(-1) A = 0.038751 B = 0.002867 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.385181 B = 9763.386093 C = 9805.337570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.059 3.941 3 C -0.105 4.105 4 C -0.526 4.526 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.904 5.904 8 Si 0.946 3.054 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.090 3.910 13 N -0.687 5.687 14 C 0.026 3.974 15 C 0.119 3.881 16 H 0.090 0.910 17 O -0.559 6.559 18 C -0.128 4.128 19 C 0.114 3.886 20 O -0.550 6.550 21 C -0.179 4.179 22 C 0.036 3.964 23 O -0.398 6.398 24 C 0.014 3.986 25 H 0.031 0.969 26 H 0.055 0.945 27 H 0.016 0.984 28 H 0.011 0.989 29 H 0.048 0.952 30 H 0.032 0.968 31 H 0.257 0.743 32 H 0.049 0.951 33 H 0.007 0.993 34 H 0.341 0.659 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.377 0.623 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.383 0.617 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.027 -3.242 23.733 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.059 3.941 3 C -0.163 4.163 4 C -0.565 4.565 5 H 0.064 0.936 6 C -0.178 4.178 7 N -0.544 5.544 8 Si 0.773 3.227 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.039 4.039 13 N -0.320 5.320 14 C -0.103 4.103 15 C 0.059 3.941 16 H 0.108 0.892 17 O -0.364 6.364 18 C -0.166 4.166 19 C 0.072 3.928 20 O -0.357 6.357 21 C -0.216 4.216 22 C -0.040 4.040 23 O -0.317 6.317 24 C -0.063 4.063 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.031 0.969 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.161 0.839 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.224 0.776 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.513 -2.212 23.149 23.519 hybrid contribution -0.233 -1.497 -0.810 1.718 sum 3.280 -3.709 22.339 22.881 Atomic orbital electron populations 1.21662 0.98344 0.97989 0.99869 1.18145 0.92275 0.92864 0.90861 1.21470 0.97093 0.98483 0.99289 1.21481 1.31195 1.11892 0.91955 0.93603 1.25570 0.95340 0.95649 1.01281 1.69986 1.37502 1.23647 1.23226 0.85692 0.78066 0.78741 0.80203 1.19523 1.20910 1.20912 1.21823 0.98261 0.93800 0.90048 1.60480 1.16883 1.53498 1.01131 1.22751 1.01117 0.95653 0.90798 1.21833 0.80990 0.99991 0.91246 0.89179 1.86621 1.20277 1.32993 1.96501 1.22270 1.02182 0.99962 0.92149 1.22400 0.82086 0.93505 0.94803 1.86627 1.20178 1.72879 1.55976 1.23684 1.00914 0.99429 0.97607 1.23630 0.95960 0.83998 1.00410 1.89144 1.76366 1.37947 1.28285 1.24286 1.00700 0.96224 0.85075 0.95052 0.92605 0.96448 0.96946 0.93359 0.94934 0.93335 0.93203 0.97443 0.83940 0.90266 0.95034 0.77567 0.87838 0.89707 0.76823 0.89235 0.88198 0.87584 0.91162 0.90938 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 7.92 71.98 0.57 -5.27 16 2 C 0.06 2.89 0.57 -52.93 -0.03 2.86 16 3 C -0.11 -5.25 8.09 71.98 0.58 -4.67 16 4 C -0.53 -28.70 8.01 25.60 0.21 -28.49 16 5 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 6 C 0.02 1.12 5.15 84.66 0.44 1.56 16 7 N -0.90 -51.19 9.35 21.45 0.20 -50.98 16 8 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 C 0.09 3.71 4.59 86.30 0.40 4.11 16 13 N -0.69 -23.90 5.71 -513.85 -2.94 -26.83 16 14 C 0.03 0.69 5.36 86.30 0.46 1.15 16 15 C 0.12 2.64 3.05 30.59 0.09 2.73 16 16 H 0.09 2.26 6.86 -2.39 -0.02 2.25 16 17 O -0.56 -13.92 11.35 -130.54 -1.48 -15.40 16 18 C -0.13 -2.02 3.98 30.59 0.12 -1.89 16 19 C 0.11 1.80 1.11 -9.78 -0.01 1.79 16 20 O -0.55 -10.09 11.52 -130.54 -1.50 -11.60 16 21 C -0.18 -2.04 6.52 31.61 0.21 -1.84 16 22 C 0.04 0.46 7.63 72.48 0.55 1.01 16 23 O -0.40 -7.83 11.65 -148.98 -1.74 -9.56 16 24 C 0.01 0.26 5.70 72.48 0.41 0.67 16 25 H 0.03 1.35 6.57 -2.39 -0.02 1.34 16 26 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 2.65 6.07 -2.39 -0.01 2.63 16 30 H 0.03 1.49 7.60 -2.39 -0.02 1.47 16 31 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.34 12.28 6.33 -89.70 -0.57 11.71 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.38 7.53 9.04 -74.06 -0.67 6.86 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.38 5.18 9.04 -74.06 -0.67 4.51 16 41 H 0.09 0.94 8.00 -2.39 -0.02 0.92 16 42 H 0.10 0.87 7.73 -2.39 -0.02 0.86 16 43 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.07 1.30 7.58 -2.38 -0.02 1.28 16 46 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 Total: -1.00 -63.48 354.58 -2.36 -65.84 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -0.93 Total: 29.21 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 4.00 Total: -26.28 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -2.74 Total: -77.82 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -4.72 Total: -36.57 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -63.48 -2.36 -65.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905284463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.234 kcal (2) G-P(sol) polarization free energy of solvation -63.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds