Wall clock time and date at job start Tue Mar 31 2020 04:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42898 * 112.94189 * 130.26030 * 3 2 1 5 5 C 1.53940 * 113.74184 * 358.67005 * 3 2 1 6 6 N 1.47814 * 86.03865 * 222.08336 * 5 3 2 7 7 S 1.65600 * 134.45997 * 204.64752 * 6 5 3 8 8 O 1.42100 * 106.40265 * 23.40189 * 7 6 5 9 9 O 1.42094 * 106.40057 * 156.32288 * 7 6 5 10 10 N 1.65596 * 107.21696 * 269.86473 * 7 6 5 11 11 C 1.46496 * 120.00252 * 89.99687 * 10 7 6 12 12 C 1.46504 * 119.99948 * 270.00027 * 10 7 6 13 13 H 1.09006 * 109.47092 * 359.97438 * 12 10 7 14 14 C 1.53004 * 109.47236 * 240.00099 * 12 10 7 15 15 C 1.50699 * 109.47516 * 120.00026 * 12 10 7 16 16 H 1.08007 * 119.99764 * 359.97438 * 15 12 10 17 17 C 1.37874 * 120.00309 * 179.97438 * 15 12 10 18 18 N 1.31513 * 119.99949 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00166 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47232 * 59.99621 * 19 17 15 21 21 H 1.48495 * 109.47163 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47144 * 300.00139 * 19 17 15 23 23 C 1.47588 * 91.04799 * 24.54996 * 6 5 3 24 24 H 4.45198 * 5.14172 * 180.02562 * 4 1 2 25 25 H 0.96702 * 114.00129 * 309.66229 * 4 3 2 26 26 H 1.09000 * 113.77366 * 336.34371 * 5 3 2 27 27 H 1.09001 * 113.77240 * 107.74506 * 5 3 2 28 28 H 1.09010 * 109.47050 * 90.00128 * 11 10 7 29 29 H 1.09001 * 109.47384 * 209.99476 * 11 10 7 30 30 H 1.08997 * 109.47487 * 329.99949 * 11 10 7 31 31 H 1.08997 * 109.46889 * 59.99393 * 14 12 10 32 32 H 1.08997 * 109.46899 * 179.97438 * 14 12 10 33 33 H 1.09000 * 109.46413 * 300.00090 * 14 12 10 34 34 H 0.96997 * 119.99982 * 179.97438 * 18 17 15 35 35 H 1.08999 * 113.76895 * 221.15504 * 23 6 5 36 36 H 1.08994 * 113.87219 * 89.76870 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.2026 0.8514 -1.0042 5 6 3.2664 -1.4078 0.0327 6 7 4.2268 -0.8505 1.0083 7 16 5.7651 -1.2457 1.4771 8 8 6.3399 -1.9698 0.3979 9 8 6.3390 -0.0604 2.0108 10 7 5.6348 -2.3111 2.7381 11 6 5.5775 -3.7515 2.4773 12 6 5.5767 -1.8131 4.1147 13 1 5.6326 -0.7245 4.1100 14 6 6.7528 -2.3802 4.9123 15 6 4.2819 -2.2473 4.7518 16 1 3.5728 -2.8351 4.1876 17 6 4.0023 -1.8943 6.0550 18 7 4.8654 -1.1782 6.7418 19 14 2.3970 -2.4319 6.8444 20 1 2.3204 -3.9149 6.8502 21 1 2.3382 -1.9273 8.2397 22 1 1.2557 -1.8805 6.0706 23 6 3.2657 0.2007 1.3950 24 1 -1.0501 -0.0001 0.0004 25 1 2.8368 0.7084 -1.8879 26 1 2.6073 -2.1687 0.4507 27 1 3.7217 -1.7094 -0.9106 28 1 6.5879 -4.1607 2.4746 29 1 4.9904 -4.2387 3.2557 30 1 5.1119 -3.9269 1.5075 31 1 7.6893 -2.0662 4.4515 32 1 6.7098 -2.0093 5.9363 33 1 6.6973 -3.4688 4.9170 34 1 4.6685 -0.9295 7.6585 35 1 3.7204 1.1810 1.5372 36 1 2.6056 -0.0848 2.2140 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908229130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:56 Heat of formation + Delta-G solvation = -47.241112 kcal Electronic energy + Delta-G solvation = -21941.538162 eV Core-core repulsion = 18555.141576 eV Total energy + Delta-G solvation = -3386.396586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91214 -38.37567 -37.90335 -36.95788 -36.35855 -34.52347 -33.72642 -30.95663 -28.89039 -27.45733 -27.25332 -27.00434 -23.20792 -22.53645 -20.29759 -19.74888 -18.79092 -18.40588 -18.34196 -17.41080 -17.15043 -16.67121 -16.14812 -15.63042 -15.40956 -15.09300 -14.88036 -14.48703 -14.35179 -13.75651 -13.58447 -13.46270 -13.30034 -13.21227 -13.03237 -13.00498 -12.76659 -12.68520 -12.54720 -12.23949 -12.14667 -11.93057 -11.80143 -11.51054 -11.22900 -10.89150 -10.50216 -10.26130 -9.67737 -8.09441 -6.25399 -0.44144 1.46696 1.47407 1.55201 1.67838 1.74878 1.84398 2.44151 2.51968 2.90323 3.12497 3.18704 3.25300 3.56845 3.83778 4.11795 4.38613 4.44366 4.51639 4.66078 4.74016 4.77973 4.78994 4.95237 4.96388 5.04609 5.12736 5.22376 5.32880 5.59187 5.68859 5.83624 6.08348 6.26995 6.59892 6.70111 6.83498 7.44508 8.95187 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.007306 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.674712 B = 3831.756486 C = 5067.324095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.256 4.256 3 C 0.225 3.775 4 O -0.538 6.538 5 C 0.112 3.888 6 N -1.042 6.042 7 S 2.811 3.189 8 O -1.000 7.000 9 O -1.014 7.014 10 N -0.998 5.998 11 C 0.101 3.899 12 C 0.272 3.728 13 H 0.021 0.979 14 C -0.138 4.138 15 C -0.531 4.531 16 H 0.070 0.930 17 C 0.016 3.984 18 N -0.919 5.919 19 Si 0.961 3.039 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.268 1.268 23 C 0.139 3.861 24 H 0.257 0.743 25 H 0.403 0.597 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.016 0.984 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.083 0.917 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 -1.820 -13.293 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.258 4.258 3 C 0.181 3.819 4 O -0.348 6.348 5 C -0.012 4.012 6 N -0.883 5.883 7 S 2.823 3.177 8 O -0.984 6.984 9 O -0.998 6.998 10 N -0.840 5.840 11 C -0.044 4.044 12 C 0.168 3.832 13 H 0.039 0.961 14 C -0.198 4.198 15 C -0.570 4.570 16 H 0.088 0.912 17 C -0.184 4.184 18 N -0.558 5.558 19 Si 0.786 3.214 20 H -0.195 1.195 21 H -0.216 1.216 22 H -0.193 1.193 23 C 0.014 3.986 24 H 0.273 0.727 25 H 0.255 0.745 26 H 0.129 0.871 27 H 0.125 0.875 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.036 0.964 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.497 -1.269 -12.950 15.540 hybrid contribution -1.036 -0.361 0.627 1.264 sum -9.533 -1.631 -12.322 15.664 Atomic orbital electron populations 1.25892 0.96512 0.96556 0.95781 1.23199 0.94228 1.03847 1.04501 1.19071 0.82139 0.90818 0.89913 1.86588 1.66132 1.60783 1.21251 1.23670 0.88657 0.96026 0.92892 1.60551 1.30852 1.43291 1.53564 1.00738 0.72796 0.72196 0.71945 1.93505 1.76017 1.73973 1.54913 1.93518 1.76394 1.49479 1.80432 1.57767 1.88586 1.17497 1.20134 1.21371 1.01745 0.79667 1.01646 1.18413 0.95058 0.93264 0.76512 0.96099 1.21939 0.95783 0.99824 1.02225 1.21570 1.03157 1.34506 0.97794 0.91162 1.25723 1.00042 0.94932 0.97666 1.70019 1.36839 1.38151 1.10765 0.85573 0.79897 0.78746 0.77170 1.19453 1.21583 1.19280 1.22931 0.88670 0.91674 0.95351 0.72704 0.74520 0.87063 0.87472 0.93056 0.90332 0.90773 0.96445 0.91106 0.93647 0.92698 0.89902 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 19.25 74.32 1.43 -0.59 16 2 C -0.26 -5.29 12.70 31.13 0.40 -4.90 16 3 C 0.22 5.50 1.80 -11.94 -0.02 5.48 16 4 O -0.54 -12.72 13.48 -148.98 -2.01 -14.73 16 5 C 0.11 2.75 8.36 86.44 0.72 3.48 16 6 N -1.04 -35.39 4.18 -532.96 -2.23 -37.62 16 7 S 2.81 117.21 6.60 -56.49 -0.37 116.84 16 8 O -1.00 -42.09 17.18 -128.00 -2.20 -44.29 16 9 O -1.01 -50.42 16.67 -128.00 -2.13 -52.55 16 10 N -1.00 -42.32 3.12 -520.42 -1.62 -43.95 16 11 C 0.10 3.52 9.28 127.77 1.19 4.71 16 12 C 0.27 13.63 2.62 44.25 0.12 13.75 16 13 H 0.02 1.21 6.91 -2.38 -0.02 1.19 16 14 C -0.14 -6.77 8.97 71.98 0.65 -6.13 16 15 C -0.53 -26.94 7.99 25.60 0.20 -26.74 16 16 H 0.07 3.37 7.33 -2.91 -0.02 3.35 16 17 C 0.02 0.84 5.30 84.65 0.45 1.29 16 18 N -0.92 -51.16 11.32 21.45 0.24 -50.92 16 19 Si 0.96 40.73 29.54 68.60 2.03 42.75 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 23 C 0.14 4.37 8.35 86.48 0.72 5.10 16 24 H 0.26 1.69 7.80 -4.41 -0.03 1.66 16 25 H 0.40 5.33 9.04 -74.06 -0.67 4.66 16 26 H 0.11 2.31 8.08 -2.39 -0.02 2.29 16 27 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.08 2.74 7.02 -2.39 -0.02 2.72 16 30 H 0.07 2.17 7.79 -2.39 -0.02 2.15 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 33 H 0.04 2.04 7.67 -2.39 -0.02 2.03 16 34 H 0.26 14.04 8.31 -92.71 -0.77 13.26 16 35 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.11 3.27 8.08 -2.39 -0.02 3.25 16 Total: -1.00 -71.38 324.70 -2.02 -73.40 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.42 Total: 15.62 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 5.85 Total: -4.55 kcal Atomic # 7 Polarization: -128.88 SS G_CDS: -3.61 Total: -132.49 kcal Atomic # 8 Polarization: -105.22 SS G_CDS: -6.34 Total: -111.57 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Atomic # 16 Polarization: 117.21 SS G_CDS: -0.37 Total: 116.84 kcal Total: -71.38 -2.02 -73.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908229130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.158 kcal (2) G-P(sol) polarization free energy of solvation -71.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds