Wall clock time and date at job start Tue Mar 31 2020 02:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 114.00099 * 2 1 4 4 O 1.42900 * 109.61730 * 53.86523 * 3 2 1 5 5 C 1.42899 * 113.99670 * 59.53280 * 4 3 2 6 6 C 1.53177 * 109.54394 * 174.09292 * 3 2 1 7 7 C 1.53094 * 109.15859 * 176.84430 * 6 3 2 8 8 O 1.42906 * 109.41491 * 302.38713 * 7 6 3 9 9 C 1.42902 * 114.09649 * 61.16429 * 8 7 6 10 10 C 1.53093 * 109.41280 * 298.83981 * 9 8 7 11 11 H 1.09005 * 109.52276 * 297.70106 * 10 9 8 12 12 N 1.46498 * 109.52004 * 177.57704 * 10 9 8 13 13 C 1.34779 * 119.99895 * 85.00194 * 12 10 9 14 14 O 1.21277 * 120.00002 * 359.97438 * 13 12 10 15 15 C 1.50706 * 119.99881 * 180.02562 * 13 12 10 16 16 C 1.52995 * 109.46877 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47238 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99661 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00381 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00017 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00013 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46968 * 90.00265 * 21 19 17 23 23 H 1.48491 * 109.47169 * 210.00026 * 21 19 17 24 24 H 1.48495 * 109.46863 * 330.00455 * 21 19 17 25 25 H 1.08999 * 109.46954 * 189.86671 * 1 2 3 26 26 H 1.09007 * 109.47328 * 309.86785 * 1 2 3 27 27 H 1.09000 * 109.46912 * 69.86682 * 1 2 3 28 28 H 1.09003 * 109.47092 * 297.95907 * 5 4 3 29 29 H 1.08998 * 109.47403 * 57.95908 * 5 4 3 30 30 H 1.09003 * 109.47221 * 177.96624 * 5 4 3 31 31 H 1.09001 * 109.51964 * 56.94054 * 6 3 2 32 32 H 1.08996 * 109.52267 * 296.75175 * 6 3 2 33 33 H 1.08996 * 109.48233 * 62.37496 * 7 6 3 34 34 H 1.09002 * 109.47920 * 182.39715 * 7 6 3 35 35 H 1.09001 * 109.47897 * 58.81890 * 9 8 7 36 36 H 1.09000 * 109.48278 * 178.84437 * 9 8 7 37 37 H 0.97001 * 119.99997 * 264.99403 * 12 10 9 38 38 H 1.08999 * 109.46749 * 299.99391 * 15 13 12 39 39 H 1.08996 * 109.47005 * 59.99431 * 15 13 12 40 40 H 1.09003 * 109.47439 * 299.99678 * 16 15 13 41 41 H 1.09000 * 109.47232 * 59.99719 * 16 15 13 42 42 H 0.97005 * 119.99697 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.4803 2.0666 1.0871 5 6 1.7216 1.4903 2.3722 6 6 3.5304 1.1896 0.1486 7 6 4.1510 2.5868 0.0684 8 8 3.7887 3.1970 -1.1720 9 6 2.3814 3.3745 -1.3458 10 6 1.6896 2.0090 -1.3224 11 1 2.0504 1.4036 -2.1539 12 7 0.2411 2.1920 -1.4424 13 6 -0.3243 2.3126 -2.6599 14 8 0.3661 2.2701 -3.6560 15 6 -1.8144 2.5015 -2.7833 16 6 -2.1939 2.6107 -4.2614 17 6 -3.6840 2.7989 -4.3850 18 1 -4.2989 2.8364 -3.4979 19 6 -4.2624 2.9222 -5.6304 20 7 -5.5628 3.0870 -5.7381 21 14 -3.1990 2.8567 -7.1648 22 1 -3.0872 1.4508 -7.6299 23 1 -3.8180 3.6832 -8.2318 24 1 -1.8463 3.3837 -6.8523 25 1 -0.3633 -1.0125 0.1761 26 1 -0.3634 0.6588 0.7888 27 1 -0.3633 0.3537 -0.9649 28 1 1.2339 0.5172 2.4314 29 1 2.7946 1.3684 2.5202 30 1 1.3202 2.1453 3.1455 31 1 3.9283 0.5676 -0.6533 32 1 3.7689 0.7397 1.1123 33 1 3.7835 3.1958 0.8942 34 1 5.2363 2.5065 0.1308 35 1 1.9907 3.9938 -0.5383 36 1 2.1919 3.8619 -2.3021 37 1 -0.3111 2.2263 -0.6456 38 1 -2.3268 1.6485 -2.3384 39 1 -2.1092 3.4135 -2.2644 40 1 -1.6815 3.4639 -4.7060 41 1 -1.8989 1.6989 -4.7806 42 1 -5.9697 3.1733 -6.6144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912842311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:51 Heat of formation + Delta-G solvation = -193.304888 kcal Electronic energy + Delta-G solvation = -24546.707763 eV Core-core repulsion = 20912.483510 eV Total energy + Delta-G solvation = -3634.224252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 287.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.11209 -40.36514 -38.92566 -37.12758 -35.82200 -35.49447 -33.42358 -32.90289 -31.19646 -28.25821 -27.83247 -27.54974 -25.08283 -24.71082 -22.96005 -21.69870 -21.00624 -19.26725 -18.80041 -18.46986 -17.75378 -17.54754 -17.14635 -16.55764 -16.37461 -16.23013 -16.18071 -15.57241 -15.35800 -14.88403 -14.73286 -14.68653 -14.47021 -14.32976 -13.92391 -13.68593 -13.42318 -12.98193 -12.90553 -12.77222 -12.54108 -12.14736 -11.98566 -11.93947 -11.79158 -11.74756 -11.40900 -11.35916 -11.03460 -10.98500 -10.79605 -10.77981 -9.85162 -8.31648 -6.34433 1.32987 1.35322 1.50060 1.56761 1.93498 2.31067 2.34782 2.51716 2.89940 3.04323 3.33390 3.60127 3.69639 3.89441 4.07648 4.16662 4.29517 4.34953 4.37770 4.40123 4.45727 4.48763 4.53284 4.56772 4.60016 4.73540 4.80147 4.85426 4.88020 4.96600 5.02683 5.19508 5.35422 5.43034 5.47499 5.60475 6.05851 6.22373 6.22902 6.41469 6.71866 7.17654 7.31107 8.83954 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.027189 B = 0.003987 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.583770 B = 7020.836747 C = 7564.893966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.399 6.399 3 C 0.267 3.733 4 O -0.398 6.398 5 C 0.020 3.980 6 C -0.164 4.164 7 C 0.060 3.940 8 O -0.392 6.392 9 C 0.063 3.937 10 C 0.109 3.891 11 H 0.087 0.913 12 N -0.709 5.709 13 C 0.516 3.484 14 O -0.577 6.577 15 C -0.115 4.115 16 C 0.005 3.995 17 C -0.528 4.528 18 H 0.052 0.948 19 C 0.016 3.984 20 N -0.943 5.943 21 Si 0.936 3.064 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.262 1.262 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.418 0.582 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.010 0.990 41 H 0.009 0.991 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.722 -4.011 20.631 28.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.320 6.320 3 C 0.189 3.811 4 O -0.319 6.319 5 C -0.075 4.075 6 C -0.202 4.202 7 C -0.016 4.016 8 O -0.309 6.309 9 C -0.016 4.016 10 C 0.002 3.998 11 H 0.105 0.895 12 N -0.366 5.366 13 C 0.305 3.695 14 O -0.456 6.456 15 C -0.155 4.155 16 C -0.033 4.033 17 C -0.566 4.566 18 H 0.070 0.930 19 C -0.182 4.182 20 N -0.584 5.584 21 Si 0.761 3.239 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.186 1.186 25 H 0.115 0.885 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.145 0.855 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.257 0.743 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.029 0.971 41 H 0.027 0.973 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.234 -3.951 19.650 28.481 hybrid contribution -0.671 -0.194 -0.505 0.862 sum 19.563 -4.145 19.145 27.684 Atomic orbital electron populations 1.23212 0.79692 1.04041 1.01708 1.88030 1.21745 1.27955 1.94252 1.22847 0.92958 0.79509 0.85773 1.87995 1.79243 1.48994 1.15666 1.23004 1.01852 0.99597 0.83020 1.22660 0.90794 1.00539 1.06170 1.22839 1.01826 0.90731 0.86169 1.87975 1.21958 1.81216 1.39791 1.22830 0.81110 0.94961 1.02659 1.22042 0.82116 0.98471 0.97131 0.89548 1.46138 1.07448 1.74262 1.08749 1.21311 0.91432 0.74169 0.82589 1.90662 1.65477 1.51110 1.38314 1.21520 0.89300 1.04984 0.99704 1.19225 0.94328 0.96376 0.93366 1.21413 0.92281 1.49324 0.93597 0.93003 1.25768 0.95879 0.94289 1.02290 1.70021 1.11456 1.51667 1.25211 0.85861 0.79715 0.78892 0.79440 1.19421 1.20366 1.18640 0.88458 0.91549 0.93388 0.93375 0.91986 0.87571 0.89460 0.86714 0.91109 0.85470 0.90717 0.90067 0.74295 0.87714 0.87711 0.97120 0.97291 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.02 113.37 1.02 1.20 16 2 O -0.40 -8.64 9.72 -126.23 -1.23 -9.86 16 3 C 0.27 5.22 0.53 30.71 0.02 5.24 16 4 O -0.40 -6.59 7.70 -126.23 -0.97 -7.56 16 5 C 0.02 0.22 10.16 113.37 1.15 1.37 16 6 C -0.16 -2.48 5.03 30.68 0.15 -2.33 16 7 C 0.06 0.88 6.69 72.01 0.48 1.37 16 8 O -0.39 -9.08 10.77 -148.98 -1.60 -10.69 16 9 C 0.06 1.56 6.27 72.01 0.45 2.01 16 10 C 0.11 2.77 2.04 45.08 0.09 2.86 16 11 H 0.09 2.71 7.58 -2.38 -0.02 2.69 16 12 N -0.71 -18.75 2.81 -442.09 -1.24 -19.99 16 13 C 0.52 18.27 7.49 87.66 0.66 18.93 16 14 O -0.58 -25.42 15.65 -3.02 -0.05 -25.47 16 15 C -0.12 -4.30 5.64 29.85 0.17 -4.13 16 16 C 0.01 0.25 3.33 29.85 0.10 0.35 16 17 C -0.53 -30.32 9.66 25.60 0.25 -30.08 16 18 H 0.05 3.12 7.99 -2.91 -0.02 3.09 16 19 C 0.02 0.92 5.47 84.65 0.46 1.39 16 20 N -0.94 -58.97 13.96 21.45 0.30 -58.67 16 21 Si 0.94 46.92 27.47 68.60 1.88 48.80 16 22 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.26 -13.09 6.54 99.48 0.65 -12.44 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.06 6.42 -2.38 -0.02 1.04 16 27 H 0.05 1.10 5.45 -2.39 -0.01 1.09 16 28 H 0.05 0.54 7.16 -2.39 -0.02 0.53 16 29 H 0.06 0.48 6.27 -2.39 -0.01 0.46 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.11 1.18 6.37 -2.39 -0.02 1.17 16 33 H 0.07 0.90 7.82 -2.39 -0.02 0.88 16 34 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.67 7.82 -2.39 -0.02 1.65 16 36 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.42 9.01 6.39 -92.71 -0.59 8.42 16 38 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 39 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 40 H 0.01 0.54 7.16 -2.39 -0.02 0.53 16 41 H 0.01 0.45 7.53 -2.39 -0.02 0.43 16 42 H 0.27 15.64 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -73.98 329.41 2.47 -71.50 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.38 Total: 13.77 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 5.01 Total: -1.82 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -0.94 Total: -78.66 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -3.85 Total: -53.59 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.88 Total: 48.80 kcal Total: -73.98 2.47 -71.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912842311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.803 kcal (2) G-P(sol) polarization free energy of solvation -73.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds