Wall clock time and date at job start Tue Mar 31 2020 03:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42104 * 110.54290 * 2 1 4 4 O 1.42093 * 110.54350 * 223.24798 * 2 1 3 5 5 C 1.76203 * 104.44948 * 111.62091 * 2 1 3 6 6 C 1.38480 * 119.88747 * 90.00490 * 5 2 1 7 7 C 1.38218 * 120.36051 * 180.02562 * 6 5 2 8 8 C 1.38302 * 120.12295 * 359.97438 * 7 6 5 9 9 F 1.35096 * 120.11331 * 179.97438 * 8 7 6 10 10 C 1.39916 * 119.76806 * 359.97438 * 8 7 6 11 11 C 1.47516 * 120.17200 * 180.02562 * 10 8 7 12 12 O 1.21525 * 119.99660 * 359.72733 * 11 10 8 13 13 O 1.34749 * 119.99728 * 179.97438 * 11 10 8 14 14 C 1.34866 * 116.99443 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00000 * 0.02562 * 14 13 11 16 16 C 1.38802 * 119.99565 * 180.02562 * 14 13 11 17 17 N 1.31417 * 120.00119 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00225 * 359.97438 * 16 14 13 19 19 H 1.48510 * 109.47041 * 90.00154 * 18 16 14 20 20 H 1.48505 * 109.47255 * 210.00047 * 18 16 14 21 21 H 1.48499 * 109.47238 * 330.00447 * 18 16 14 22 22 C 1.37825 * 119.88666 * 270.25774 * 5 2 1 23 23 H 1.09002 * 109.46773 * 308.37452 * 1 2 3 24 24 H 1.08995 * 109.47110 * 68.37967 * 1 2 3 25 25 H 1.09001 * 109.46699 * 188.37759 * 1 2 3 26 26 H 1.08004 * 119.81662 * 359.97438 * 6 5 2 27 27 H 1.07996 * 119.93759 * 179.97438 * 7 6 5 28 28 H 0.97002 * 120.00800 * 180.02562 * 17 16 14 29 29 H 1.08004 * 120.07042 * 0.02562 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9116 5 6 2.2537 -0.6287 1.5862 6 6 2.4260 -1.9911 1.7650 7 6 2.7703 -2.4949 3.0052 8 6 2.9459 -1.6394 4.0776 9 9 3.2819 -2.1320 5.2898 10 6 2.7742 -0.2618 3.9026 11 6 2.9597 0.6588 5.0401 12 8 3.2577 0.2209 6.1339 13 8 2.7940 1.9849 4.8675 14 6 2.9791 2.7707 5.9479 15 1 3.2481 2.3300 6.8964 16 6 2.8239 4.1458 5.8405 17 7 3.0047 4.9117 6.8931 18 14 2.3592 4.9081 4.1996 19 1 0.8801 4.9824 4.0894 20 1 2.9316 6.2754 4.1092 21 1 2.8965 4.0726 3.0958 22 6 2.4198 0.2366 2.6460 23 1 -0.3633 0.6380 0.8057 24 1 -0.3633 0.3786 -0.9553 25 1 -0.3633 -1.0167 0.1497 26 1 2.2897 -2.6636 0.9310 27 1 2.9026 -3.5586 3.1370 28 1 2.8958 5.8727 6.8183 29 1 2.2804 1.2983 2.5048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919621639.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:41 Heat of formation + Delta-G solvation = -155.614442 kcal Electronic energy + Delta-G solvation = -20466.514373 eV Core-core repulsion = 16783.832216 eV Total energy + Delta-G solvation = -3682.682157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.035 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.91164 -39.71754 -38.48709 -37.25923 -36.09292 -35.46845 -32.51928 -31.59343 -31.06221 -29.71151 -26.05072 -23.95967 -23.22423 -20.93650 -19.00754 -18.27893 -17.98196 -17.37389 -16.87263 -16.39538 -16.28248 -15.73408 -15.55217 -15.11745 -14.67612 -14.33246 -13.97848 -13.79248 -13.48612 -13.33401 -13.24655 -12.65893 -12.59970 -12.29282 -12.21089 -12.12477 -11.60961 -11.42212 -11.30820 -10.97555 -10.63589 -10.45932 -9.83999 -9.37373 -9.35043 -9.19371 -8.80732 -6.52376 -4.23308 -0.15566 0.43059 0.79918 2.60814 2.76187 3.15559 3.18608 3.34289 3.64178 3.70561 3.83445 3.92749 4.06686 4.14899 4.42541 4.51679 4.67103 4.78125 5.00279 5.09937 5.32213 5.38104 5.43411 5.65115 5.73125 5.94064 6.25629 6.55016 7.54916 7.88388 8.45951 8.83707 9.48423 10.54458 Molecular weight = 288.03amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.006845 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.732478 B = 4089.784732 C = 5714.592360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.504 3.496 3 O -0.929 6.929 4 O -0.939 6.939 5 C -0.687 4.687 6 C 0.014 3.986 7 C -0.185 4.185 8 C 0.202 3.798 9 F -0.105 7.105 10 C -0.142 4.142 11 C 0.437 3.563 12 O -0.523 6.523 13 O -0.237 6.237 14 C -0.373 4.373 15 H 0.114 0.886 16 C 0.068 3.932 17 N -0.860 5.860 18 Si 0.897 3.103 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.251 1.251 22 C 0.044 3.956 23 H 0.135 0.865 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.153 0.847 27 H 0.150 0.850 28 H 0.283 0.717 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 -11.927 -15.301 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.682 3.318 3 O -0.926 6.926 4 O -0.936 6.936 5 C -0.774 4.774 6 C -0.005 4.005 7 C -0.204 4.204 8 C 0.182 3.818 9 F -0.083 7.083 10 C -0.146 4.146 11 C 0.284 3.716 12 O -0.419 6.419 13 O -0.145 6.145 14 C -0.448 4.448 15 H 0.131 0.869 16 C -0.138 4.138 17 N -0.498 5.498 18 Si 0.721 3.279 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.174 1.174 22 C 0.024 3.976 23 H 0.154 0.846 24 H 0.150 0.850 25 H 0.151 0.849 26 H 0.171 0.829 27 H 0.168 0.832 28 H 0.094 0.906 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.103 -11.552 -15.494 20.268 hybrid contribution -0.545 0.093 0.578 0.800 sum -6.648 -11.459 -14.916 19.950 Atomic orbital electron populations 1.30233 1.25550 1.12179 1.12088 1.05133 0.77942 0.74734 0.73947 1.93638 1.77157 1.36123 1.85707 1.93573 1.77493 1.61855 1.60681 1.30557 1.21564 1.02843 1.22391 1.20852 0.89827 0.93036 0.96780 1.21165 1.06574 1.00650 0.92030 1.17970 0.92192 0.90565 0.81100 1.91632 1.87842 1.87492 1.41304 1.19595 1.08376 0.91717 0.94872 1.19982 0.81828 0.82636 0.87179 1.90753 1.47612 1.77402 1.26173 1.83506 1.73845 1.16402 1.40722 1.20760 1.47396 0.87901 0.88696 0.86880 1.24594 0.95585 0.94664 0.98945 1.69583 1.44902 1.05935 1.29401 0.86322 0.79493 0.78952 0.83094 1.19464 1.20283 1.17439 1.21232 0.86552 1.00724 0.89045 0.84592 0.84966 0.84930 0.82929 0.83187 0.90613 0.81943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.56 10.80 101.05 1.09 -2.47 15 2 S 2.50 24.83 5.79 -107.50 -0.62 24.20 15 3 O -0.93 -13.23 17.12 -57.54 -0.99 -14.21 15 4 O -0.94 -11.05 17.11 -57.54 -0.98 -12.03 15 5 C -0.69 -8.22 5.65 -39.64 -0.22 -8.44 15 6 C 0.01 0.15 9.46 -39.50 -0.37 -0.23 15 7 C -0.18 -2.14 10.01 -39.57 -0.40 -2.54 15 8 C 0.20 3.29 7.29 -38.93 -0.28 3.01 15 9 F -0.10 -1.92 15.55 2.25 0.04 -1.89 15 10 C -0.14 -2.66 5.88 -104.92 -0.62 -3.28 15 11 C 0.44 10.62 7.83 34.51 0.27 10.89 15 12 O -0.52 -14.29 14.59 -19.29 -0.28 -14.57 15 13 O -0.24 -6.18 7.82 -21.72 -0.17 -6.35 15 14 C -0.37 -10.90 10.11 30.94 0.31 -10.59 15 15 H 0.11 3.65 7.09 -52.49 -0.37 3.27 15 16 C 0.07 1.90 5.50 -17.52 -0.10 1.80 15 17 N -0.86 -24.84 13.96 55.49 0.77 -24.06 15 18 Si 0.90 20.75 28.62 -169.99 -4.86 15.89 15 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 20 H -0.28 -6.21 7.11 56.52 0.40 -5.80 15 21 H -0.25 -5.71 7.11 56.52 0.40 -5.31 15 22 C 0.04 0.68 9.03 -39.17 -0.35 0.33 15 23 H 0.14 0.69 8.14 -51.92 -0.42 0.26 15 24 H 0.13 0.50 8.14 -51.93 -0.42 0.08 15 25 H 0.13 0.45 8.14 -51.92 -0.42 0.02 15 26 H 0.15 1.06 7.56 -52.48 -0.40 0.66 15 27 H 0.15 1.25 8.06 -52.49 -0.42 0.83 15 28 H 0.28 7.43 8.31 -40.82 -0.34 7.09 15 29 H 0.16 2.58 7.12 -52.48 -0.37 2.21 15 LS Contribution 286.00 15.07 4.31 4.31 Total: -1.00 -37.04 286.00 -5.43 -42.47 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -1.97 Total: -2.24 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.67 Total: -11.52 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.77 Total: -24.06 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -2.42 Total: -47.17 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.86 Total: 15.89 kcal Atomic # 16 Polarization: 24.83 SS G_CDS: -0.62 Total: 24.20 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -37.04 -5.43 -42.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919621639.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.148 kcal (2) G-P(sol) polarization free energy of solvation -37.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds