Wall clock time and date at job start Tue Mar 31 2020 04:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99529 * 2 1 4 4 H 1.48502 * 109.47021 * 269.99872 * 3 2 1 5 5 H 1.48499 * 109.47480 * 30.00058 * 3 2 1 6 6 H 1.48500 * 109.47200 * 150.00013 * 3 2 1 7 7 C 1.38811 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99809 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99763 * 0.02562 * 7 2 1 10 10 C 1.47027 * 125.65236 * 359.97401 * 9 7 2 11 11 C 1.54315 * 107.27109 * 178.98869 * 10 9 7 12 12 C 1.55161 * 102.94777 * 337.80680 * 11 10 9 13 13 H 1.08994 * 111.00543 * 153.61260 * 12 11 10 14 14 N 1.46498 * 111.00169 * 277.43319 * 12 11 10 15 15 C 1.34777 * 119.99774 * 204.99610 * 14 12 11 16 16 O 1.21287 * 120.00205 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00066 * 179.97438 * 15 14 12 18 18 C 1.55888 * 110.82275 * 180.02562 * 17 15 14 19 19 S 1.83082 * 82.43983 * 142.74217 * 18 17 15 20 20 O 1.42105 * 111.36329 * 90.42104 * 19 18 17 21 21 O 1.42094 * 111.36046 * 229.36962 * 19 18 17 22 22 C 1.56628 * 110.85322 * 293.62730 * 17 15 14 23 23 C 1.47429 * 125.64622 * 180.02562 * 9 7 2 24 24 H 0.96993 * 120.00768 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.88004 * 59.56964 * 10 9 7 26 26 H 1.09000 * 110.00779 * 298.47584 * 10 9 7 27 27 H 1.09002 * 110.71895 * 219.44362 * 11 10 9 28 28 H 1.09007 * 110.87675 * 96.24275 * 11 10 9 29 29 H 0.96997 * 120.00380 * 24.99631 * 14 12 11 30 30 H 1.09008 * 110.39876 * 56.82865 * 17 15 14 31 31 H 1.08992 * 114.38139 * 29.34774 * 18 17 15 32 32 H 1.09007 * 114.37999 * 256.13093 * 18 17 15 33 33 H 1.08994 * 114.53930 * 103.95191 * 22 17 15 34 34 H 1.09000 * 114.37474 * 330.56890 * 22 17 15 35 35 H 1.08997 * 110.36871 * 85.24108 * 23 9 7 36 36 H 1.08999 * 110.36335 * 322.91464 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4482 -4.0441 -0.0255 12 6 0.8522 -4.6565 -0.6098 13 1 0.9837 -5.6857 -0.2760 14 7 0.8589 -4.5767 -2.0726 15 6 1.5909 -5.4506 -2.7917 16 8 2.2444 -6.3027 -2.2278 17 6 1.5974 -5.3690 -4.2964 18 6 2.5094 -6.4758 -4.9074 19 16 1.1954 -6.5157 -6.1817 20 8 1.4770 -5.6149 -7.2441 21 8 0.7584 -7.8442 -6.4331 22 6 0.1862 -5.7174 -4.8798 23 6 1.9336 -3.7311 0.0016 24 1 -0.4851 0.8399 -0.0004 25 1 -0.5574 -2.0527 -0.8833 26 1 -0.5567 -2.0836 0.9008 27 1 -1.2982 -4.2519 -0.6755 28 1 -0.6332 -4.4201 0.9809 29 1 0.3367 -3.8951 -2.5236 30 1 1.9178 -4.3792 -4.6219 31 1 2.5810 -7.3822 -4.3065 32 1 3.4738 -6.1166 -5.2667 33 1 -0.3879 -4.8559 -5.2207 34 1 -0.3934 -6.4113 -4.2711 35 1 2.1665 -4.0413 1.0202 36 1 2.8332 -3.7407 -0.6139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014540452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:43 Heat of formation + Delta-G solvation = -51.712692 kcal Electronic energy + Delta-G solvation = -21197.937154 eV Core-core repulsion = 17811.346665 eV Total energy + Delta-G solvation = -3386.590488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.00784 -37.59444 -37.42336 -36.30705 -35.28558 -33.86943 -31.85910 -29.29943 -27.80997 -27.40985 -24.86553 -23.83984 -20.45268 -20.15901 -19.88726 -19.04006 -17.90075 -16.93925 -16.85317 -16.75050 -16.04293 -15.53378 -15.04302 -14.72204 -14.15498 -13.87811 -13.86957 -13.63674 -13.24768 -12.64494 -12.44838 -12.42594 -12.36988 -12.06079 -12.02412 -11.89603 -11.05239 -10.97817 -10.91172 -10.84040 -10.72789 -10.44022 -10.20375 -10.04912 -9.76146 -9.70568 -8.88151 -8.62583 -6.91088 -5.79982 -3.13072 -0.30792 1.92838 2.52372 3.09174 3.26253 3.34472 3.40589 3.41956 3.62047 3.74678 3.86016 4.43309 4.56894 4.78820 4.88900 5.11673 5.20963 5.32158 5.36263 5.39984 5.50434 5.66834 5.73356 6.08972 6.26316 6.38415 6.39237 6.58080 6.89089 7.44395 7.46812 7.67105 7.72110 8.16309 8.29039 9.13953 9.73760 10.38933 11.31899 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.004051 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.964229 B = 6910.582787 C = 7427.493309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.153 4.153 12 C 0.126 3.874 13 H 0.092 0.908 14 N -0.697 5.697 15 C 0.535 3.465 16 O -0.540 6.540 17 C -0.170 4.170 18 C -0.535 4.535 19 S 2.380 3.620 20 O -0.922 6.922 21 O -0.935 6.935 22 C -0.557 4.557 23 C 0.125 3.875 24 H 0.252 0.748 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.405 0.595 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.029 0.971 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 -11.969 -9.279 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.192 4.192 12 C 0.020 3.980 13 H 0.110 0.890 14 N -0.346 5.346 15 C 0.319 3.681 16 O -0.417 6.417 17 C -0.194 4.194 18 C -0.665 4.665 19 S 2.563 3.437 20 O -0.919 6.919 21 O -0.932 6.932 22 C -0.686 4.686 23 C -0.002 4.002 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.240 0.760 30 H 0.157 0.843 31 H 0.178 0.822 32 H 0.166 0.834 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.046 0.954 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.666 -12.685 -9.932 16.124 hybrid contribution 0.350 1.924 0.947 2.173 sum -0.316 -10.761 -8.985 14.022 Atomic orbital electron populations 1.69938 1.04849 1.25091 1.57228 1.24774 0.95722 0.97624 1.02216 0.86123 0.78640 0.83450 0.77568 1.21626 1.21641 1.20712 1.19052 0.90443 0.82368 1.43719 0.90537 1.44480 1.01450 0.99863 1.87305 1.21174 0.84572 0.87890 1.01345 1.23230 0.95581 1.00057 1.00360 1.22211 0.97650 0.99598 0.78518 0.89030 1.45792 1.47991 1.33327 1.07483 1.19523 0.79518 0.81597 0.87491 1.90693 1.42559 1.36612 1.71845 1.23508 0.93372 1.03657 0.98907 1.30807 1.13299 1.05829 1.16524 1.10247 0.80708 0.75556 0.77197 1.93682 1.82698 1.65390 1.50089 1.93591 1.78914 1.35528 1.85138 1.31041 1.03689 1.15315 1.18548 1.21940 0.94699 0.86403 0.97173 0.93740 0.93585 0.93699 0.91559 0.90853 0.75985 0.84278 0.82236 0.83386 0.82838 0.82991 0.95362 0.93975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.92 10.31 55.49 0.57 -25.34 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.13 10.28 -15.06 -0.15 -6.28 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.56 3.39 -170.08 -0.58 -15.14 16 10 C 0.17 3.88 5.36 -3.07 -0.02 3.87 16 11 C -0.15 -2.53 6.55 -24.90 -0.16 -2.70 16 12 C 0.13 2.08 3.43 -65.78 -0.23 1.85 16 13 H 0.09 1.46 7.54 -51.93 -0.39 1.07 16 14 N -0.70 -10.14 5.19 -51.73 -0.27 -10.41 16 15 C 0.54 7.39 7.20 -10.99 -0.08 7.31 16 16 O -0.54 -9.10 15.35 5.55 0.09 -9.02 16 17 C -0.17 -1.59 3.23 -88.27 -0.28 -1.88 16 18 C -0.53 -4.27 8.20 38.70 0.32 -3.95 16 19 S 2.38 18.72 6.79 -107.50 -0.73 17.99 16 20 O -0.92 -10.13 18.18 -57.47 -1.04 -11.18 16 21 O -0.93 -10.61 18.18 -57.47 -1.04 -11.65 16 22 C -0.56 -3.76 8.54 39.11 0.33 -3.43 16 23 C 0.12 2.53 6.93 -2.53 -0.02 2.51 16 24 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.05 1.11 7.38 -51.93 -0.38 0.72 16 26 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.41 5.51 8.67 -40.82 -0.35 5.15 16 30 H 0.14 1.12 8.14 -51.92 -0.42 0.69 16 31 H 0.16 1.37 7.40 -51.93 -0.38 0.98 16 32 H 0.15 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.15 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.15 0.93 8.10 -51.93 -0.42 0.51 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -36.33 313.20 -8.53 -44.85 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.83 Total: 1.65 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.39 Total: -2.99 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.27 Total: -50.89 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -2.00 Total: -31.85 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 18.72 SS G_CDS: -0.73 Total: 17.99 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.33 -8.53 -44.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014540452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.859 kcal (2) G-P(sol) polarization free energy of solvation -36.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds