Wall clock time and date at job start Tue Mar 31 2020 04:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00123 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99843 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.88973 * 325.70173 * 10 9 7 12 12 C 1.55154 * 111.00010 * 89.58141 * 10 9 7 13 13 C 1.54324 * 102.94242 * 153.57296 * 12 10 9 14 14 N 1.47024 * 107.27302 * 337.80779 * 13 12 10 15 15 C 1.34775 * 125.65092 * 178.96822 * 14 13 12 16 16 O 1.21281 * 119.99680 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.99948 * 359.97438 * 15 14 13 18 18 C 1.53047 * 113.14438 * 280.36512 * 17 15 14 19 19 S 1.81430 * 89.88856 * 211.85419 * 18 17 15 20 20 O 1.42102 * 112.75441 * 280.47676 * 19 18 17 21 21 O 1.42099 * 112.75123 * 136.73176 * 19 18 17 22 22 C 1.53040 * 113.15131 * 179.97438 * 17 15 14 23 23 C 1.47474 * 108.71693 * 358.97399 * 14 13 12 24 24 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00117 * 359.97438 * 9 7 2 26 26 H 1.08999 * 110.72310 * 271.93496 * 12 10 9 27 27 H 1.09001 * 110.72637 * 35.03595 * 12 10 9 28 28 H 1.09003 * 109.88489 * 97.22365 * 13 12 10 29 29 H 1.08999 * 109.88723 * 218.23548 * 13 12 10 30 30 H 1.08990 * 112.50160 * 50.20544 * 17 15 14 31 31 H 1.08991 * 113.15270 * 327.11428 * 18 17 15 32 32 H 1.09000 * 113.14716 * 96.59802 * 18 17 15 33 33 H 1.09004 * 113.14872 * 263.40439 * 22 17 15 34 34 H 1.09004 * 113.14958 * 32.87900 * 22 17 15 35 35 H 1.08996 * 110.34436 * 265.24963 * 23 14 13 36 36 H 1.09004 * 110.40327 * 142.91856 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9810 -3.5727 -0.5733 12 6 2.3453 -4.1330 1.4490 13 6 2.4553 -5.6645 1.2939 14 7 1.7399 -6.0311 0.0628 15 6 1.6217 -7.2778 -0.4354 16 8 1.0053 -7.4641 -1.4631 17 6 2.2555 -8.4401 0.2845 18 6 3.7578 -8.5648 0.0198 19 16 3.6332 -10.3676 0.1823 20 8 3.5924 -10.7958 1.5366 21 8 4.3710 -11.0615 -0.8144 22 6 2.0239 -9.7807 -0.4165 23 6 1.1731 -4.8089 -0.5369 24 1 -0.4850 0.8400 0.0004 25 1 0.3556 -2.3880 0.0005 26 1 3.2831 -3.7141 1.8139 27 1 1.5221 -3.8681 2.1125 28 1 3.5029 -5.9548 1.2142 29 1 1.9983 -6.1578 2.1517 30 1 2.0032 -8.4619 1.3446 31 1 4.0446 -8.2437 -0.9814 32 1 4.3693 -8.1059 0.7967 33 1 1.1835 -10.3398 -0.0050 34 1 1.9763 -9.6940 -1.5020 35 1 0.1397 -4.6742 -0.2175 36 1 1.2317 -4.8567 -1.6243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018903565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:39 Heat of formation + Delta-G solvation = -59.627974 kcal Electronic energy + Delta-G solvation = -20801.386734 eV Core-core repulsion = 17414.453014 eV Total energy + Delta-G solvation = -3386.933721 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27333 -37.85247 -37.63577 -36.50148 -35.90524 -34.22237 -31.59794 -29.66343 -28.14839 -27.02919 -25.00387 -23.33047 -22.43575 -20.21069 -19.26121 -19.20480 -17.74980 -17.40096 -16.87502 -16.65636 -16.20524 -15.92102 -15.29511 -14.91671 -14.36079 -14.05427 -13.60011 -13.45632 -13.33221 -12.86357 -12.75587 -12.64619 -12.62210 -12.20323 -12.07548 -11.92456 -11.68074 -11.34847 -11.25215 -10.90527 -10.79499 -10.74300 -10.39366 -10.16469 -9.88912 -9.78865 -9.03048 -8.57113 -7.13045 -5.88904 -3.20144 -0.28036 1.53315 2.48054 2.89953 3.25820 3.37016 3.41936 3.42936 3.66141 3.77125 4.15400 4.47389 4.48984 4.55949 4.76215 4.92829 4.95772 5.17985 5.24992 5.31458 5.46953 5.51174 5.52820 5.65185 5.86546 6.04985 6.11523 6.26263 6.41760 6.50943 6.80586 7.54275 7.58164 8.08998 8.28238 9.39919 9.92970 10.27765 11.33105 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.043265 B = 0.003092 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.016459 B = 9053.484336 C = 9282.163256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.248 4.248 8 H 0.072 0.928 9 N -0.714 5.714 10 C 0.172 3.828 11 H 0.065 0.935 12 C -0.156 4.156 13 C 0.097 3.903 14 N -0.607 5.607 15 C 0.549 3.451 16 O -0.536 6.536 17 C -0.092 4.092 18 C -0.592 4.592 19 S 2.417 3.583 20 O -0.912 6.912 21 O -0.922 6.922 22 C -0.578 4.578 23 C 0.097 3.903 24 H 0.258 0.742 25 H 0.387 0.613 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.134 0.866 31 H 0.149 0.851 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.155 0.845 35 H 0.070 0.930 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.777 -19.405 3.166 20.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.379 4.379 8 H 0.090 0.910 9 N -0.354 5.354 10 C 0.060 3.940 11 H 0.083 0.917 12 C -0.197 4.197 13 C -0.026 4.026 14 N -0.340 5.340 15 C 0.335 3.665 16 O -0.414 6.414 17 C -0.115 4.115 18 C -0.720 4.720 19 S 2.597 3.403 20 O -0.909 6.909 21 O -0.919 6.919 22 C -0.707 4.707 23 C -0.026 4.026 24 H 0.068 0.932 25 H 0.221 0.779 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.167 0.833 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.173 0.827 35 H 0.089 0.911 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.163 -20.391 2.881 21.803 hybrid contribution -0.516 2.033 -0.063 2.098 sum 6.647 -18.358 2.818 19.727 Atomic orbital electron populations 1.69648 1.05188 1.26122 1.56743 1.24781 0.95534 0.97864 1.02331 0.86234 0.78538 0.83252 0.77918 1.21132 1.21613 1.21129 1.19164 0.91027 0.83765 1.43954 0.90999 1.42250 1.05837 0.99302 1.88037 1.21290 0.94498 0.85672 0.92545 0.91689 1.23437 1.03063 0.91134 1.02112 1.22184 0.96163 0.98117 0.86171 1.48404 1.53282 1.06380 1.25982 1.19243 0.80405 0.82140 0.84713 1.90715 1.42474 1.84018 1.24156 1.21534 0.93752 0.94136 1.02074 1.30970 1.00710 1.28174 1.12155 1.08258 0.79211 0.77525 0.75269 1.93729 1.85330 1.79565 1.32264 1.93657 1.67957 1.70941 1.59311 1.30879 1.23379 1.03898 1.12535 1.22631 0.98107 0.82974 0.98848 0.93222 0.77901 0.90587 0.90432 0.91634 0.91759 0.84817 0.83265 0.84824 0.85209 0.82689 0.91128 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.51 9.97 -15.06 -0.15 -6.66 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.71 -16.76 5.26 -51.35 -0.27 -17.04 16 10 C 0.17 3.13 3.70 -65.78 -0.24 2.88 16 11 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 12 C -0.16 -2.33 6.65 -24.90 -0.17 -2.50 16 13 C 0.10 1.12 6.47 -3.06 -0.02 1.10 16 14 N -0.61 -8.41 3.33 -170.48 -0.57 -8.98 16 15 C 0.55 7.40 7.35 -10.99 -0.08 7.32 16 16 O -0.54 -9.18 16.20 5.56 0.09 -9.09 16 17 C -0.09 -0.78 3.02 -91.73 -0.28 -1.06 16 18 C -0.59 -3.67 7.40 37.18 0.28 -3.40 16 19 S 2.42 15.14 7.55 -107.50 -0.81 14.33 16 20 O -0.91 -8.18 18.18 -57.30 -1.04 -9.22 16 21 O -0.92 -9.00 18.18 -57.30 -1.04 -10.04 16 22 C -0.58 -4.04 7.18 37.18 0.27 -3.78 16 23 C 0.10 1.62 6.54 -2.50 -0.02 1.61 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.39 9.72 7.73 -40.82 -0.32 9.40 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.13 0.84 8.11 -51.93 -0.42 0.42 16 31 H 0.15 0.94 8.11 -51.93 -0.42 0.52 16 32 H 0.13 0.55 7.98 -51.93 -0.41 0.14 16 33 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.16 1.22 7.57 -51.93 -0.39 0.83 16 35 H 0.07 1.23 8.00 -51.93 -0.42 0.81 16 36 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 LS Contribution 316.66 15.07 4.77 4.77 Total: -1.00 -35.99 316.66 -8.54 -44.53 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.87 Total: 5.40 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.51 Total: -4.81 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.11 Total: -52.35 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -1.99 Total: -28.35 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 15.14 SS G_CDS: -0.81 Total: 14.33 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.99 -8.54 -44.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018903565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.095 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds