Wall clock time and date at job start Tue Mar 31 2020 04:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00123 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99843 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.88973 * 325.70173 * 10 9 7 12 12 C 1.55154 * 111.00010 * 89.58141 * 10 9 7 13 13 C 1.54324 * 102.94242 * 153.57296 * 12 10 9 14 14 N 1.47024 * 107.27302 * 337.80779 * 13 12 10 15 15 C 1.34775 * 125.65092 * 178.96822 * 14 13 12 16 16 O 1.21281 * 119.99680 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.99948 * 359.97438 * 15 14 13 18 18 C 1.53047 * 113.14438 * 280.36512 * 17 15 14 19 19 S 1.81430 * 89.88856 * 211.85419 * 18 17 15 20 20 O 1.42102 * 112.75441 * 280.47676 * 19 18 17 21 21 O 1.42099 * 112.75123 * 136.73176 * 19 18 17 22 22 C 1.53040 * 113.15131 * 179.97438 * 17 15 14 23 23 C 1.47474 * 108.71693 * 358.97399 * 14 13 12 24 24 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00117 * 359.97438 * 9 7 2 26 26 H 1.08999 * 110.72310 * 271.93496 * 12 10 9 27 27 H 1.09001 * 110.72637 * 35.03595 * 12 10 9 28 28 H 1.09003 * 109.88489 * 97.22365 * 13 12 10 29 29 H 1.08999 * 109.88723 * 218.23548 * 13 12 10 30 30 H 1.08990 * 112.50160 * 50.20544 * 17 15 14 31 31 H 1.08991 * 113.15270 * 327.11428 * 18 17 15 32 32 H 1.09000 * 113.14716 * 96.59802 * 18 17 15 33 33 H 1.09004 * 113.14872 * 263.40439 * 22 17 15 34 34 H 1.09004 * 113.14958 * 32.87900 * 22 17 15 35 35 H 1.08996 * 110.34436 * 265.24963 * 23 14 13 36 36 H 1.09004 * 110.40327 * 142.91856 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9810 -3.5727 -0.5733 12 6 2.3453 -4.1330 1.4490 13 6 2.4553 -5.6645 1.2939 14 7 1.7399 -6.0311 0.0628 15 6 1.6217 -7.2778 -0.4354 16 8 1.0053 -7.4641 -1.4631 17 6 2.2555 -8.4401 0.2845 18 6 3.7578 -8.5648 0.0198 19 16 3.6332 -10.3676 0.1823 20 8 3.5924 -10.7958 1.5366 21 8 4.3710 -11.0615 -0.8144 22 6 2.0239 -9.7807 -0.4165 23 6 1.1731 -4.8089 -0.5369 24 1 -0.4850 0.8400 0.0004 25 1 0.3556 -2.3880 0.0005 26 1 3.2831 -3.7141 1.8139 27 1 1.5221 -3.8681 2.1125 28 1 3.5029 -5.9548 1.2142 29 1 1.9983 -6.1578 2.1517 30 1 2.0032 -8.4619 1.3446 31 1 4.0446 -8.2437 -0.9814 32 1 4.3693 -8.1059 0.7967 33 1 1.1835 -10.3398 -0.0050 34 1 1.9763 -9.6940 -1.5020 35 1 0.1397 -4.6742 -0.2175 36 1 1.2317 -4.8567 -1.6243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018903565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:34 Heat of formation + Delta-G solvation = -88.677058 kcal Electronic energy + Delta-G solvation = -20802.646397 eV Core-core repulsion = 17414.453014 eV Total energy + Delta-G solvation = -3388.193384 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 4.78 seconds Orbital eigenvalues (eV) -41.32531 -38.97225 -38.36759 -37.18147 -36.68127 -35.93856 -33.30545 -31.04563 -29.55539 -27.56073 -26.31480 -24.94394 -23.43261 -21.64346 -20.18617 -19.76965 -19.31152 -18.66226 -17.55641 -17.41649 -17.12498 -16.88492 -16.44426 -16.14751 -15.59953 -15.44066 -14.87974 -14.63639 -14.39015 -14.10219 -13.84273 -13.40671 -13.31020 -13.28831 -13.15780 -13.02932 -12.83692 -12.63913 -12.51543 -12.36516 -12.15856 -12.03598 -11.76767 -11.60114 -11.32781 -10.93901 -10.90269 -9.70925 -9.05872 -7.95847 -5.26139 -0.83437 0.99810 1.49328 1.51181 1.51975 1.57893 1.86167 2.56785 2.73071 3.05971 3.15711 3.34653 3.45384 3.70095 3.74658 3.92910 4.01628 4.10017 4.26341 4.28664 4.35219 4.50309 4.53277 4.70766 4.82815 4.87985 4.96929 4.99868 5.19102 5.26138 5.42809 5.53409 6.24798 6.48920 7.03236 7.31661 8.03427 8.26812 9.27295 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.043265 B = 0.003092 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.016459 B = 9053.484336 C = 9282.163256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.974 3.026 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.274 1.274 7 C -0.242 4.242 8 H 0.082 0.918 9 N -0.730 5.730 10 C 0.164 3.836 11 H 0.063 0.937 12 C -0.147 4.147 13 C 0.100 3.900 14 N -0.608 5.608 15 C 0.544 3.456 16 O -0.582 6.582 17 C -0.095 4.095 18 C -0.585 4.585 19 S 2.468 3.532 20 O -0.931 6.931 21 O -0.955 6.955 22 C -0.584 4.584 23 C 0.106 3.894 24 H 0.251 0.749 25 H 0.374 0.626 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.166 0.834 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.057 0.943 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.832 -20.679 4.658 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.803 3.197 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.200 1.200 7 C -0.374 4.374 8 H 0.100 0.900 9 N -0.369 5.369 10 C 0.054 3.946 11 H 0.081 0.919 12 C -0.187 4.187 13 C -0.022 4.022 14 N -0.341 5.341 15 C 0.332 3.668 16 O -0.462 6.462 17 C -0.118 4.118 18 C -0.714 4.714 19 S 2.650 3.350 20 O -0.929 6.929 21 O -0.952 6.952 22 C -0.713 4.713 23 C -0.019 4.019 24 H 0.060 0.940 25 H 0.206 0.794 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.183 0.817 31 H 0.167 0.833 32 H 0.183 0.817 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.075 0.925 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.280 -21.729 4.398 24.033 hybrid contribution -1.156 2.358 -0.563 2.685 sum 8.124 -19.371 3.835 21.353 Atomic orbital electron populations 1.69811 1.06732 1.26240 1.59233 1.25578 0.96307 1.01187 1.03519 0.85211 0.77158 0.79085 0.78283 1.20511 1.22580 1.19984 1.19582 0.91602 0.84757 1.41428 0.90038 1.42416 1.05447 1.00624 1.88458 1.21467 0.93974 0.84104 0.95024 0.91864 1.23223 1.02902 0.93892 0.98711 1.22352 0.98339 0.95442 0.86021 1.48474 1.53346 1.05705 1.26563 1.20110 0.79623 0.82741 0.84287 1.90698 1.44455 1.84680 1.26346 1.21730 0.94911 0.92030 1.03177 1.30956 0.99460 1.27542 1.13405 1.06756 0.77755 0.76859 0.73658 1.93699 1.85511 1.80300 1.33342 1.93612 1.68894 1.72263 1.60479 1.30950 1.24854 1.03478 1.11988 1.22268 0.97365 0.84309 0.97931 0.94000 0.79422 0.89559 0.91960 0.88069 0.88666 0.81702 0.83252 0.81707 0.83560 0.83808 0.92511 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.94 13.06 21.65 0.28 -57.66 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 3 Si 0.97 44.43 29.55 68.60 2.03 46.46 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.24 -12.71 9.97 84.04 0.84 -11.87 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.73 -34.79 5.26 -316.38 -1.66 -36.45 16 10 C 0.16 5.89 3.70 46.38 0.17 6.06 16 11 H 0.06 2.29 8.11 -2.39 -0.02 2.27 16 12 C -0.15 -4.05 6.65 31.78 0.21 -3.84 16 13 C 0.10 1.92 6.47 86.73 0.56 2.48 16 14 N -0.61 -15.64 3.33 -811.67 -2.70 -18.34 16 15 C 0.54 13.67 7.35 87.66 0.64 14.31 16 16 O -0.58 -19.83 16.20 -3.03 -0.05 -19.88 16 17 C -0.10 -1.30 3.02 -11.51 -0.03 -1.34 16 18 C -0.58 -5.00 7.40 72.00 0.53 -4.47 16 19 S 2.47 24.20 7.55 -56.49 -0.43 23.77 16 20 O -0.93 -13.74 18.18 -127.88 -2.32 -16.06 16 21 O -0.96 -16.98 18.18 -127.88 -2.32 -19.30 16 22 C -0.58 -6.86 7.18 72.00 0.52 -6.34 16 23 C 0.11 3.54 6.54 86.84 0.57 4.11 16 24 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 25 H 0.37 19.47 7.73 -92.71 -0.72 18.76 16 26 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.10 1.30 7.90 -2.39 -0.02 1.28 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.17 1.25 8.11 -2.39 -0.02 1.23 16 31 H 0.15 1.42 8.11 -2.39 -0.02 1.40 16 32 H 0.16 0.42 7.98 -2.39 -0.02 0.40 16 33 H 0.15 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.14 2.12 7.57 -2.39 -0.02 2.11 16 35 H 0.06 2.04 8.00 -2.39 -0.02 2.02 16 36 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 Total: -1.00 -79.54 316.66 -2.32 -81.87 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.38 Total: 20.09 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 4.48 Total: -4.50 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -4.08 Total: -112.45 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -4.70 Total: -55.24 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 24.20 SS G_CDS: -0.43 Total: 23.77 kcal Total: -79.54 -2.32 -81.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018903565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.809 kcal (2) G-P(sol) polarization free energy of solvation -79.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.78 seconds