Wall clock time and date at job start Tue Mar 31 2020 03:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99673 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00422 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99911 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00518 * 3 2 1 7 7 C 1.38811 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00017 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99801 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.84834 * 25.33583 * 10 9 7 12 12 C 1.53777 * 113.61261 * 156.53262 * 10 9 7 13 13 C 1.53784 * 87.08493 * 139.98252 * 12 10 9 14 14 H 1.08993 * 113.61456 * 89.11069 * 13 12 10 15 15 N 1.46496 * 113.61291 * 219.93699 * 13 12 10 16 16 C 1.34779 * 119.99766 * 204.99485 * 15 13 12 17 17 O 1.21290 * 119.99725 * 359.97438 * 16 15 13 18 18 C 1.50696 * 120.00120 * 179.97438 * 16 15 13 19 19 C 1.53039 * 113.15205 * 280.54929 * 18 16 15 20 20 S 1.81507 * 89.86339 * 211.86833 * 19 18 16 21 21 O 1.42100 * 112.71292 * 280.42858 * 20 19 18 22 22 O 1.42094 * 112.85948 * 136.68230 * 20 19 18 23 23 C 1.53046 * 113.15026 * 180.11789 * 18 16 15 24 24 C 1.53777 * 113.61622 * 254.13843 * 10 9 7 25 25 H 0.97000 * 119.99954 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00418 * 0.02562 * 9 7 2 27 27 H 1.09003 * 113.61445 * 254.52660 * 12 10 9 28 28 H 1.09005 * 113.61882 * 25.43088 * 12 10 9 29 29 H 0.96994 * 120.00510 * 24.99559 * 15 13 12 30 30 H 1.09002 * 112.49530 * 50.33829 * 18 16 15 31 31 H 1.09002 * 113.15072 * 327.10737 * 19 18 16 32 32 H 1.08995 * 113.14823 * 96.59484 * 19 18 16 33 33 H 1.09003 * 113.14902 * 263.40347 * 23 18 16 34 34 H 1.08994 * 113.14844 * 32.85319 * 23 18 16 35 35 H 1.09006 * 113.61468 * 334.57113 * 24 10 9 36 36 H 1.08996 * 113.61618 * 105.47112 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4404 -0.7000 6 1 1.4475 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 3.0561 -3.5693 0.4293 12 6 1.2470 -4.8364 0.5606 13 6 1.8608 -5.6903 -0.5615 14 1 2.8052 -6.1596 -0.2861 15 7 0.9146 -6.6294 -1.1688 16 6 1.3668 -7.7487 -1.7681 17 8 2.5572 -7.9782 -1.8049 18 6 0.3934 -8.7150 -2.3923 19 6 -0.2852 -9.6300 -1.3703 20 16 -0.3695 -10.9494 -2.6140 21 8 -1.4436 -10.7743 -3.5277 22 8 -0.0137 -12.2226 -2.0929 23 6 1.0746 -9.9308 -3.0250 24 6 2.0328 -4.3828 -1.3559 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3557 -2.3881 -0.0005 27 1 1.5554 -5.1422 1.5603 28 1 0.1684 -4.7069 0.4704 29 1 -0.0374 -6.4456 -1.1397 30 1 -0.3120 -8.2225 -3.0616 31 1 0.3564 -9.8785 -0.5250 32 1 -1.2661 -9.2710 -1.0587 33 1 1.2318 -9.8236 -4.0982 34 1 1.9791 -10.2369 -2.4994 35 1 1.1695 -4.1289 -1.9711 36 1 2.9747 -4.3227 -1.9011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022134224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:40 Heat of formation + Delta-G solvation = -47.998425 kcal Electronic energy + Delta-G solvation = -20313.183605 eV Core-core repulsion = 16926.754179 eV Total energy + Delta-G solvation = -3386.429426 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.36343 -38.46649 -37.78872 -36.59612 -36.02717 -34.42944 -32.95713 -29.70963 -27.15628 -25.57018 -25.31102 -23.80208 -22.04226 -20.51503 -19.43269 -19.28865 -17.98455 -17.49011 -16.99215 -16.73554 -16.30287 -15.85885 -15.56365 -14.96508 -14.42467 -14.34888 -13.84238 -13.68454 -13.60916 -13.03202 -12.72593 -12.70095 -12.45462 -12.34862 -12.10966 -12.02562 -11.46176 -11.11211 -10.95599 -10.86257 -10.70974 -10.57675 -10.36636 -10.04433 -9.89377 -9.23337 -9.02385 -8.90935 -7.12654 -6.18862 -3.19491 -0.36673 1.45205 2.35152 2.95841 3.18174 3.48061 3.52363 3.59101 3.66112 3.66617 4.07927 4.38970 4.60637 4.63145 4.68049 4.87452 4.88291 5.04097 5.18586 5.21098 5.40555 5.42591 5.68746 5.74022 5.92778 6.05025 6.12214 6.28408 6.45120 6.55583 6.87869 7.39799 7.74373 8.04174 8.66947 9.12455 9.98914 10.13044 11.29238 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.047713 B = 0.002651 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.695312 B =10558.956226 C =10759.377602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.044 4.044 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.337 4.337 8 H 0.067 0.933 9 N -0.722 5.722 10 C 0.174 3.826 11 H 0.081 0.919 12 C -0.159 4.159 13 C 0.117 3.883 14 H 0.111 0.889 15 N -0.708 5.708 16 C 0.536 3.464 17 O -0.534 6.534 18 C -0.098 4.098 19 C -0.593 4.593 20 S 2.417 3.583 21 O -0.911 6.911 22 O -0.921 6.921 23 C -0.579 4.579 24 C -0.176 4.176 25 H 0.255 0.745 26 H 0.368 0.632 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.401 0.599 30 H 0.136 0.864 31 H 0.148 0.852 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.155 0.845 35 H 0.079 0.921 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.608 -21.607 -3.911 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.241 4.241 3 Si 0.914 3.086 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.468 4.468 8 H 0.085 0.915 9 N -0.361 5.361 10 C 0.062 3.938 11 H 0.099 0.901 12 C -0.199 4.199 13 C 0.012 3.988 14 H 0.129 0.871 15 N -0.358 5.358 16 C 0.319 3.681 17 O -0.411 6.411 18 C -0.121 4.121 19 C -0.721 4.721 20 S 2.598 3.402 21 O -0.908 6.908 22 O -0.918 6.918 23 C -0.707 4.707 24 C -0.218 4.218 25 H 0.066 0.934 26 H 0.202 0.798 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.236 0.764 30 H 0.154 0.846 31 H 0.166 0.834 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.173 0.827 35 H 0.097 0.903 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.307 -21.020 -4.257 21.487 hybrid contribution -0.013 -0.547 0.266 0.609 sum -1.320 -21.567 -3.991 21.973 Atomic orbital electron populations 1.70871 1.06076 1.28407 1.53420 1.25817 0.97030 1.01142 1.00150 0.83193 0.73932 0.75216 0.76309 1.22219 1.22064 1.21338 1.20136 0.92187 0.85767 1.48673 0.91506 1.42364 1.04698 1.00771 1.88308 1.21281 0.95408 0.84457 0.92696 0.90130 1.23861 1.00964 0.97459 0.97627 1.22568 0.93456 0.87608 0.95145 0.87110 1.46008 1.10831 1.21853 1.57081 1.19677 0.88692 0.81432 0.78279 1.90712 1.16393 1.75414 1.58579 1.21613 0.98152 0.95360 0.97023 1.30977 1.09470 1.16799 1.14847 1.08263 0.77981 0.75442 0.78547 1.93736 1.49809 1.87937 1.59316 1.93659 1.83031 1.37607 1.77533 1.30873 1.20065 1.08994 1.10807 1.24362 1.01897 0.94903 1.00672 0.93413 0.79838 0.91313 0.90071 0.76432 0.84613 0.83353 0.84794 0.85142 0.82707 0.90284 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.53 13.70 55.49 0.76 -27.77 16 2 C -0.04 -1.25 5.50 -17.43 -0.10 -1.34 16 3 Si 1.08 25.53 29.92 -169.99 -5.09 20.44 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.34 -9.26 9.97 -15.06 -0.15 -9.41 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.72 -17.38 5.41 -52.64 -0.28 -17.66 16 10 C 0.17 3.29 4.47 -67.12 -0.30 2.99 16 11 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 12 C -0.16 -2.34 7.58 -25.92 -0.20 -2.54 16 13 C 0.12 1.62 4.24 -67.03 -0.28 1.34 16 14 H 0.11 1.62 7.46 -51.93 -0.39 1.23 16 15 N -0.71 -7.92 5.36 -52.93 -0.28 -8.20 16 16 C 0.54 6.14 7.33 -10.99 -0.08 6.06 16 17 O -0.53 -8.17 15.54 5.55 0.09 -8.09 16 18 C -0.10 -0.69 3.81 -91.73 -0.35 -1.04 16 19 C -0.59 -2.83 7.49 37.18 0.28 -2.55 16 20 S 2.42 13.19 7.55 -107.50 -0.81 12.37 16 21 O -0.91 -7.69 18.18 -57.31 -1.04 -8.74 16 22 O -0.92 -8.33 18.18 -57.31 -1.04 -9.37 16 23 C -0.58 -3.52 7.18 37.18 0.27 -3.25 16 24 C -0.18 -2.95 7.70 -25.83 -0.20 -3.15 16 25 H 0.25 7.52 6.77 -40.82 -0.28 7.25 16 26 H 0.37 9.03 6.74 -40.82 -0.28 8.75 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 29 H 0.40 3.48 8.73 -40.82 -0.36 3.13 16 30 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.15 0.70 8.11 -51.93 -0.42 0.28 16 32 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.15 1.07 7.57 -51.93 -0.39 0.67 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 318.69 15.07 4.80 4.80 Total: -1.00 -38.28 318.69 -8.71 -46.99 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.69 Total: 8.11 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.11 Total: -12.89 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.19 Total: -53.63 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -2.00 Total: -26.19 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.09 Total: 20.44 kcal Atomic # 16 Polarization: 13.19 SS G_CDS: -0.81 Total: 12.37 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -38.28 -8.71 -46.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022134224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.011 kcal (2) G-P(sol) polarization free energy of solvation -38.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds