Wall clock time and date at job start Tue Mar 31 2020 03:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99673 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00422 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99911 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00518 * 3 2 1 7 7 C 1.38811 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00017 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99801 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.84834 * 25.33583 * 10 9 7 12 12 C 1.53777 * 113.61261 * 156.53262 * 10 9 7 13 13 C 1.53784 * 87.08493 * 139.98252 * 12 10 9 14 14 H 1.08993 * 113.61456 * 89.11069 * 13 12 10 15 15 N 1.46496 * 113.61291 * 219.93699 * 13 12 10 16 16 C 1.34779 * 119.99766 * 204.99485 * 15 13 12 17 17 O 1.21290 * 119.99725 * 359.97438 * 16 15 13 18 18 C 1.50696 * 120.00120 * 179.97438 * 16 15 13 19 19 C 1.53039 * 113.15205 * 280.54929 * 18 16 15 20 20 S 1.81507 * 89.86339 * 211.86833 * 19 18 16 21 21 O 1.42100 * 112.71292 * 280.42858 * 20 19 18 22 22 O 1.42094 * 112.85948 * 136.68230 * 20 19 18 23 23 C 1.53046 * 113.15026 * 180.11789 * 18 16 15 24 24 C 1.53777 * 113.61622 * 254.13843 * 10 9 7 25 25 H 0.97000 * 119.99954 * 179.97438 * 1 2 3 26 26 H 0.97000 * 120.00418 * 0.02562 * 9 7 2 27 27 H 1.09003 * 113.61445 * 254.52660 * 12 10 9 28 28 H 1.09005 * 113.61882 * 25.43088 * 12 10 9 29 29 H 0.96994 * 120.00510 * 24.99559 * 15 13 12 30 30 H 1.09002 * 112.49530 * 50.33829 * 18 16 15 31 31 H 1.09002 * 113.15072 * 327.10737 * 19 18 16 32 32 H 1.08995 * 113.14823 * 96.59484 * 19 18 16 33 33 H 1.09003 * 113.14902 * 263.40347 * 23 18 16 34 34 H 1.08994 * 113.14844 * 32.85319 * 23 18 16 35 35 H 1.09006 * 113.61468 * 334.57113 * 24 10 9 36 36 H 1.08996 * 113.61618 * 105.47112 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4404 -0.7000 6 1 1.4475 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 3.0561 -3.5693 0.4293 12 6 1.2470 -4.8364 0.5606 13 6 1.8608 -5.6903 -0.5615 14 1 2.8052 -6.1596 -0.2861 15 7 0.9146 -6.6294 -1.1688 16 6 1.3668 -7.7487 -1.7681 17 8 2.5572 -7.9782 -1.8049 18 6 0.3934 -8.7150 -2.3923 19 6 -0.2852 -9.6300 -1.3703 20 16 -0.3695 -10.9494 -2.6140 21 8 -1.4436 -10.7743 -3.5277 22 8 -0.0137 -12.2226 -2.0929 23 6 1.0746 -9.9308 -3.0250 24 6 2.0328 -4.3828 -1.3559 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3557 -2.3881 -0.0005 27 1 1.5554 -5.1422 1.5603 28 1 0.1684 -4.7069 0.4704 29 1 -0.0374 -6.4456 -1.1397 30 1 -0.3120 -8.2225 -3.0616 31 1 0.3564 -9.8785 -0.5250 32 1 -1.2661 -9.2710 -1.0587 33 1 1.2318 -9.8236 -4.0982 34 1 1.9791 -10.2369 -2.4994 35 1 1.1695 -4.1289 -1.9711 36 1 2.9747 -4.3227 -1.9011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022134224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:35 Heat of formation + Delta-G solvation = -79.716385 kcal Electronic energy + Delta-G solvation = -20314.558999 eV Core-core repulsion = 16926.754179 eV Total energy + Delta-G solvation = -3387.804820 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 5.47 seconds Orbital eigenvalues (eV) -41.34083 -39.68921 -38.39976 -37.21461 -36.71627 -36.10701 -34.33649 -31.57111 -27.60113 -26.72409 -26.62569 -25.50842 -23.35258 -21.47037 -20.68103 -19.78305 -19.49009 -18.73169 -17.74448 -17.34063 -17.14107 -16.82062 -16.52640 -16.24778 -15.72086 -15.61891 -15.20784 -15.07025 -14.43614 -14.09840 -13.74278 -13.41682 -13.34066 -13.31649 -12.93780 -12.87662 -12.68553 -12.62092 -12.19353 -12.15834 -12.03985 -11.86982 -11.83177 -11.34897 -11.21685 -10.91152 -10.81069 -10.07440 -9.11008 -8.40467 -5.34542 -0.85746 0.98562 1.50718 1.58672 1.68470 1.82747 2.09785 2.70659 2.71688 3.05758 3.14343 3.36258 3.50706 3.58933 3.73465 3.81375 3.90406 3.99489 4.11958 4.20288 4.27685 4.51114 4.65138 4.77204 4.79849 4.82565 4.95068 5.04372 5.05527 5.28505 5.54874 5.62072 6.49131 6.51184 7.08124 7.16374 7.98721 8.09158 9.11666 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.047713 B = 0.002651 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.695312 B =10558.956226 C =10759.377602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.103 4.103 3 Si 1.128 2.872 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.293 1.293 7 C -0.335 4.335 8 H 0.065 0.935 9 N -0.736 5.736 10 C 0.151 3.849 11 H 0.073 0.927 12 C -0.139 4.139 13 C 0.137 3.863 14 H 0.107 0.893 15 N -0.701 5.701 16 C 0.533 3.467 17 O -0.576 6.576 18 C -0.103 4.103 19 C -0.579 4.579 20 S 2.461 3.539 21 O -0.936 6.936 22 O -0.957 6.957 23 C -0.584 4.584 24 C -0.171 4.171 25 H 0.246 0.754 26 H 0.363 0.637 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.416 0.584 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.164 0.836 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.072 0.928 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 -22.512 -3.819 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.294 4.294 3 Si 0.953 3.047 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.220 1.220 7 C -0.466 4.466 8 H 0.083 0.917 9 N -0.376 5.376 10 C 0.041 3.959 11 H 0.091 0.909 12 C -0.178 4.178 13 C 0.032 3.968 14 H 0.125 0.875 15 N -0.352 5.352 16 C 0.319 3.681 17 O -0.456 6.456 18 C -0.126 4.126 19 C -0.708 4.708 20 S 2.643 3.357 21 O -0.934 6.934 22 O -0.954 6.954 23 C -0.713 4.713 24 C -0.213 4.213 25 H 0.057 0.943 26 H 0.196 0.804 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.254 0.746 30 H 0.181 0.819 31 H 0.171 0.829 32 H 0.182 0.818 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.091 0.909 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.645 -22.004 -4.177 22.458 hybrid contribution 0.158 -0.326 0.226 0.427 sum -1.486 -22.330 -3.952 22.726 Atomic orbital electron populations 1.70969 1.07089 1.28025 1.56215 1.27135 0.97156 1.04571 1.00563 0.82612 0.73518 0.71719 0.76876 1.21071 1.20093 1.21971 1.20454 0.92378 0.87205 1.46609 0.91688 1.42505 1.04610 1.01607 1.88883 1.21622 0.95594 0.83898 0.94788 0.90856 1.23653 1.00871 0.94749 0.98525 1.22133 0.93934 0.87024 0.93758 0.87495 1.45879 1.11215 1.21363 1.56719 1.20361 0.88835 0.81527 0.77380 1.90701 1.18513 1.76325 1.60014 1.21784 0.97916 0.94779 0.98093 1.30913 1.10932 1.14854 1.14144 1.06934 0.76617 0.74389 0.77757 1.93698 1.50856 1.88193 1.60618 1.93610 1.83481 1.40033 1.78239 1.30942 1.20027 1.08596 1.11732 1.24189 1.01171 0.96512 0.99399 0.94346 0.80423 0.89849 0.89120 0.74637 0.81875 0.82916 0.81830 0.83863 0.83547 0.90939 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 179. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.67 13.70 21.65 0.30 -59.37 16 2 C -0.10 -5.87 5.50 84.86 0.47 -5.40 16 3 Si 1.13 51.34 29.92 68.60 2.05 53.39 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 6 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.33 -18.47 9.97 84.03 0.84 -17.63 16 8 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 9 N -0.74 -35.52 5.41 -320.46 -1.73 -37.26 16 10 C 0.15 5.64 4.47 45.51 0.20 5.84 16 11 H 0.07 2.81 8.11 -2.39 -0.02 2.79 16 12 C -0.14 -3.80 7.58 31.12 0.24 -3.56 16 13 C 0.14 3.57 4.24 45.58 0.19 3.77 16 14 H 0.11 2.97 7.46 -2.39 -0.02 2.95 16 15 N -0.70 -13.90 5.36 -439.75 -2.36 -16.26 16 16 C 0.53 11.04 7.33 87.66 0.64 11.68 16 17 O -0.58 -16.94 15.54 -3.06 -0.05 -16.99 16 18 C -0.10 -1.15 3.81 -11.51 -0.04 -1.19 16 19 C -0.58 -3.64 7.49 72.00 0.54 -3.10 16 20 S 2.46 22.06 7.55 -56.49 -0.43 21.64 16 21 O -0.94 -13.90 18.18 -127.87 -2.32 -16.22 16 22 O -0.96 -16.17 18.18 -127.87 -2.32 -18.49 16 23 C -0.58 -6.01 7.18 72.00 0.52 -5.49 16 24 C -0.17 -5.61 7.70 31.18 0.24 -5.37 16 25 H 0.25 14.82 6.77 -92.71 -0.63 14.19 16 26 H 0.36 17.98 6.74 -92.71 -0.62 17.35 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.09 2.36 8.09 -2.38 -0.02 2.34 16 29 H 0.42 5.86 8.73 -92.71 -0.81 5.05 16 30 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.15 0.97 8.11 -2.39 -0.02 0.95 16 32 H 0.16 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.15 1.86 7.57 -2.39 -0.02 1.84 16 35 H 0.07 2.48 8.14 -2.38 -0.02 2.47 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -82.74 318.69 -3.21 -85.95 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.17 Total: 24.08 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 3.83 Total: -20.46 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -3.79 Total: -112.89 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -4.70 Total: -51.71 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal Atomic # 16 Polarization: 22.06 SS G_CDS: -0.43 Total: 21.64 kcal Total: -82.74 -3.21 -85.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022134224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.234 kcal (2) G-P(sol) polarization free energy of solvation -82.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.47 seconds