Wall clock time and date at job start Tue Mar 31 2020 04:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99616 * 2 1 4 4 H 1.48509 * 109.47228 * 240.00060 * 3 2 1 5 5 H 1.48494 * 109.47364 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47169 * 120.00482 * 3 2 1 7 7 C 1.38809 * 120.00444 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99683 * 359.97438 * 7 2 1 10 10 C 1.47066 * 136.05534 * 180.02562 * 9 7 2 11 11 C 1.53504 * 88.04678 * 207.12355 * 10 9 7 12 12 N 1.46499 * 114.20382 * 220.37387 * 11 10 9 13 13 C 1.34779 * 119.99696 * 205.00090 * 12 11 10 14 14 O 1.21286 * 119.99918 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00148 * 180.02562 * 13 12 11 16 16 H 1.09001 * 110.01336 * 58.61731 * 15 13 12 17 17 C 1.53878 * 110.02705 * 297.19075 * 15 13 12 18 18 C 1.54159 * 108.70810 * 193.52550 * 17 15 13 19 19 S 1.82920 * 105.08327 * 27.90712 * 18 17 15 20 20 O 1.42101 * 109.35560 * 244.47643 * 19 18 17 21 21 O 1.42103 * 109.35508 * 111.27359 * 19 18 17 22 22 C 1.55043 * 110.03090 * 179.97438 * 15 13 12 23 23 C 1.47064 * 136.05806 * 0.04980 * 9 7 2 24 24 H 0.96996 * 120.00248 * 359.97438 * 1 2 3 25 25 H 1.09002 * 113.46793 * 321.93327 * 10 9 7 26 26 H 1.08999 * 113.46805 * 92.31694 * 10 9 7 27 27 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 28 28 H 0.96992 * 120.00390 * 24.99789 * 12 11 10 29 29 H 1.08999 * 109.64859 * 313.38098 * 17 15 13 30 30 H 1.09002 * 109.64854 * 73.67328 * 17 15 13 31 31 H 1.09004 * 110.32111 * 269.01066 * 18 17 15 32 32 H 1.08996 * 110.32453 * 146.80853 * 18 17 15 33 33 H 1.09002 * 110.78595 * 279.99391 * 22 15 13 34 34 H 1.09002 * 110.78937 * 43.45261 * 22 15 13 35 35 H 1.08999 * 113.47096 * 267.62616 * 23 9 7 36 36 H 1.09005 * 113.46966 * 38.01009 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.6802 -3.8153 -0.0005 11 6 0.3424 -4.0936 -0.7000 12 7 -0.3488 -5.2925 -0.2191 13 6 -1.2194 -5.9360 -1.0219 14 8 -1.4308 -5.5224 -2.1423 15 6 -1.9309 -7.1689 -0.5272 16 1 -2.5049 -6.9339 0.3691 17 6 -0.9106 -8.2803 -0.2244 18 6 -1.6670 -9.6128 -0.0539 19 16 -3.1737 -9.4390 -1.0765 20 8 -4.3192 -9.4684 -0.2362 21 8 -3.0891 -10.3149 -2.1923 22 6 -2.8714 -7.7181 -1.6306 23 6 -0.0875 -2.7949 -0.0010 24 1 -0.4850 0.8400 0.0004 25 1 2.5487 -4.0469 -0.6170 26 1 1.7455 -4.2464 0.9985 27 1 0.3834 -4.0240 -1.7870 28 1 -0.1800 -5.6231 0.6770 29 1 -0.2034 -8.3634 -1.0496 30 1 -0.3730 -8.0441 0.6939 31 1 -1.9348 -9.7650 0.9917 32 1 -1.0586 -10.4422 -0.4143 33 1 -3.8025 -7.1522 -1.6622 34 1 -2.3768 -7.7057 -2.6019 35 1 -0.4936 -2.9545 0.9979 36 1 -0.7224 -2.1580 -0.6171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030631252.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:41 Heat of formation + Delta-G solvation = -77.712343 kcal Electronic energy + Delta-G solvation = -20721.050254 eV Core-core repulsion = 17333.332336 eV Total energy + Delta-G solvation = -3387.717918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.23307 -39.55428 -38.07389 -37.11852 -36.70471 -35.16140 -33.76603 -30.98556 -29.59088 -26.99012 -26.40276 -24.96124 -23.38410 -21.46063 -21.07045 -19.79044 -18.79532 -18.56157 -17.81802 -17.36012 -16.96114 -16.67848 -16.62374 -15.89816 -15.70472 -15.29239 -15.21144 -14.84273 -14.44127 -13.77239 -13.55709 -13.32824 -13.23581 -13.19559 -13.12525 -13.05678 -12.91073 -12.77025 -12.65212 -12.29744 -12.01255 -11.99998 -11.78604 -11.40164 -11.24304 -10.90833 -10.85317 -9.92000 -8.98594 -7.93921 -5.29121 -0.89029 1.45592 1.49416 1.54846 1.55690 1.62574 2.15053 2.49476 2.64794 3.09698 3.23241 3.28125 3.45680 3.61927 3.68601 3.82223 3.91017 4.06164 4.12948 4.35895 4.53245 4.57067 4.75989 4.76347 4.89761 4.90547 5.00822 5.06999 5.17398 5.22375 5.46421 5.71058 5.88618 6.61612 6.85893 7.29758 7.56406 8.54008 9.23172 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.051764 B = 0.002987 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.789234 B = 9371.040979 C = 9554.225116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.069 4.069 3 Si 0.983 3.017 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.231 4.231 8 H 0.092 0.908 9 N -0.640 5.640 10 C 0.121 3.879 11 C 0.116 3.884 12 N -0.694 5.694 13 C 0.524 3.476 14 O -0.582 6.582 15 C -0.110 4.110 16 H 0.152 0.848 17 C -0.109 4.109 18 C -0.556 4.556 19 S 2.399 3.601 20 O -0.974 6.974 21 O -0.982 6.982 22 C -0.573 4.573 23 C 0.140 3.860 24 H 0.248 0.752 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.420 0.580 29 H 0.095 0.905 30 H 0.135 0.865 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.030 0.970 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.262 -21.511 3.751 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.811 3.189 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.359 4.359 8 H 0.110 0.890 9 N -0.366 5.366 10 C -0.004 4.004 11 C 0.009 3.991 12 N -0.346 5.346 13 C 0.310 3.690 14 O -0.461 6.461 15 C -0.132 4.132 16 H 0.170 0.830 17 C -0.148 4.148 18 C -0.689 4.689 19 S 2.587 3.413 20 O -0.971 6.971 21 O -0.979 6.979 22 C -0.702 4.702 23 C 0.013 3.987 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.258 0.742 29 H 0.113 0.887 30 H 0.153 0.847 31 H 0.188 0.812 32 H 0.182 0.818 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.048 0.952 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.122 -21.522 2.747 21.800 hybrid contribution 0.606 1.887 0.305 2.005 sum -1.517 -19.635 3.052 19.929 Atomic orbital electron populations 1.70033 1.06674 1.25818 1.57758 1.25726 0.96556 1.01226 1.02667 0.85083 0.77067 0.78300 0.78461 1.20106 1.22307 1.19830 1.19312 0.90883 0.82394 1.43319 0.88996 1.45560 1.03849 1.00979 1.86248 1.22834 0.95281 0.83693 0.98621 1.22898 0.93641 0.83803 0.98740 1.45715 1.43015 1.27387 1.18512 1.20698 0.78725 0.84819 0.84734 1.90725 1.64706 1.68611 1.22087 1.22163 0.97224 0.94044 0.99797 0.83029 1.22033 0.97169 0.88156 1.07434 1.30300 1.16233 1.05938 1.16423 1.08624 0.78740 0.77565 0.76405 1.93579 1.48980 1.86537 1.67996 1.93564 1.88083 1.63275 1.52981 1.30602 1.09078 1.22284 1.08283 1.22526 0.87977 0.91623 0.96566 0.94286 0.92316 0.91325 0.88795 0.74180 0.88678 0.84689 0.81230 0.81765 0.84136 0.84319 0.95211 0.95463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.00 11.51 21.65 0.25 -57.75 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.98 45.14 29.55 68.60 2.03 47.16 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.23 -12.69 10.75 84.03 0.90 -11.78 16 8 H 0.09 4.72 7.83 -2.91 -0.02 4.69 16 9 N -0.64 -31.67 3.78 -737.83 -2.79 -34.46 16 10 C 0.12 4.26 8.45 83.18 0.70 4.97 16 11 C 0.12 4.06 4.62 45.49 0.21 4.27 16 12 N -0.69 -16.22 5.33 -441.58 -2.36 -18.58 16 13 C 0.52 12.68 7.14 87.66 0.63 13.31 16 14 O -0.58 -20.48 15.37 -3.05 -0.05 -20.53 16 15 C -0.11 -1.43 2.96 -10.54 -0.03 -1.46 16 16 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 17 C -0.11 -0.61 5.70 31.28 0.18 -0.44 16 18 C -0.56 -2.13 7.26 72.37 0.53 -1.61 16 19 S 2.40 33.03 6.11 -56.49 -0.34 32.69 16 20 O -0.97 -20.40 18.15 -127.49 -2.31 -22.71 16 21 O -0.98 -21.97 18.15 -127.49 -2.31 -24.29 16 22 C -0.57 -8.84 6.20 72.68 0.45 -8.39 16 23 C 0.14 6.49 7.22 83.23 0.60 7.09 16 24 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 27 H 0.09 3.79 7.45 -2.39 -0.02 3.77 16 28 H 0.42 6.17 8.75 -92.71 -0.81 5.36 16 29 H 0.09 0.59 8.09 -2.39 -0.02 0.57 16 30 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.17 -0.14 8.14 -2.38 -0.02 -0.16 16 32 H 0.16 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.14 2.47 7.63 -2.39 -0.02 2.45 16 35 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.03 1.50 7.12 -2.38 -0.02 1.48 16 Total: -1.00 -87.96 315.37 -2.97 -90.93 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 0.29 Total: 4.99 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 4.63 Total: 2.54 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -4.90 Total: -110.79 kcal Atomic # 8 Polarization: -62.85 SS G_CDS: -4.67 Total: -67.52 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: 33.03 SS G_CDS: -0.34 Total: 32.69 kcal Total: -87.96 -2.97 -90.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030631252.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.217 kcal (2) G-P(sol) polarization free energy of solvation -87.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds