Wall clock time and date at job start Tue Mar 31 2020 03:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99710 * 2 1 4 4 H 1.48500 * 109.47516 * 274.98834 * 3 2 1 5 5 H 1.48500 * 109.47295 * 34.99410 * 3 2 1 6 6 H 1.48504 * 109.46991 * 154.99241 * 3 2 1 7 7 C 1.38814 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99702 * 185.06117 * 7 2 1 9 9 N 1.36934 * 120.00187 * 5.05798 * 7 2 1 10 10 C 1.47575 * 134.49470 * 173.48198 * 9 7 2 11 11 C 1.53950 * 86.11689 * 155.36000 * 10 9 7 12 12 N 1.46505 * 113.73961 * 137.95564 * 11 10 9 13 13 C 1.34770 * 119.99748 * 156.92533 * 12 11 10 14 14 O 1.21284 * 120.00372 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99901 * 179.97438 * 13 12 11 16 16 H 1.08999 * 110.36083 * 27.83548 * 15 13 12 17 17 C 1.54167 * 110.31651 * 149.99846 * 15 13 12 18 18 C 1.53882 * 108.69884 * 146.81116 * 17 15 13 19 19 C 1.55044 * 106.62655 * 312.81625 * 18 17 15 20 20 S 1.82918 * 110.31727 * 265.66231 * 15 13 12 21 21 O 1.42103 * 109.35195 * 125.57678 * 20 15 13 22 22 O 1.42099 * 109.35640 * 352.37036 * 20 15 13 23 23 C 1.47816 * 134.45167 * 353.35239 * 9 7 2 24 24 H 0.97000 * 120.00394 * 359.97438 * 1 2 3 25 25 H 1.09001 * 113.76577 * 41.06004 * 10 9 7 26 26 H 1.09000 * 113.77193 * 269.66041 * 10 9 7 27 27 H 1.09001 * 113.73943 * 269.15663 * 11 10 9 28 28 H 0.97002 * 120.00080 * 336.92088 * 12 11 10 29 29 H 1.09000 * 109.64632 * 26.96745 * 17 15 13 30 30 H 1.08996 * 109.64861 * 266.66275 * 17 15 13 31 31 H 1.08997 * 110.02408 * 72.11417 * 18 17 15 32 32 H 1.09001 * 110.02558 * 193.52870 * 18 17 15 33 33 H 1.08998 * 110.79058 * 160.70239 * 19 18 17 34 34 H 1.08995 * 110.79358 * 284.16776 * 19 18 17 35 35 H 1.08998 * 113.76947 * 90.38137 * 23 9 7 36 36 H 1.08999 * 113.83899 * 318.91147 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2022 -0.0005 8 1 3.0871 -1.2040 0.0820 9 7 1.3296 -2.3857 -0.1056 10 6 1.7287 -3.7983 -0.2581 11 6 0.3710 -4.1419 0.3811 12 7 -0.3174 -5.2632 -0.2633 13 6 -1.2387 -5.9707 0.4201 14 8 -1.4983 -5.6789 1.5683 15 6 -1.9473 -7.1237 -0.2430 16 1 -1.3166 -7.5623 -1.0162 17 6 -2.3308 -8.1892 0.8032 18 6 -3.6532 -8.8486 0.3737 19 6 -4.6194 -7.6977 -0.0081 20 16 -3.5355 -6.5661 -0.9590 21 8 -3.5804 -6.9168 -2.3354 22 8 -3.7876 -5.2260 -0.5593 23 6 -0.1001 -2.7608 -0.1094 24 1 -0.4851 0.8400 0.0004 25 1 2.5860 -4.0810 0.3527 26 1 1.8196 -4.1196 -1.2957 27 1 0.4077 -4.2331 1.4667 28 1 -0.1101 -5.4963 -1.1818 29 1 -2.4562 -7.7174 1.7778 30 1 -1.5469 -8.9442 0.8617 31 1 -3.4852 -9.4961 -0.4868 32 1 -4.0682 -9.4256 1.2002 33 1 -5.4341 -8.0671 -0.6309 34 1 -5.0057 -7.2048 0.8839 35 1 -0.5476 -2.7767 -1.1031 36 1 -0.7002 -2.2168 0.6201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031415912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:59 Heat of formation + Delta-G solvation = -77.181276 kcal Electronic energy + Delta-G solvation = -21252.751914 eV Core-core repulsion = 17865.057025 eV Total energy + Delta-G solvation = -3387.694889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.21505 -39.42568 -38.21024 -37.25741 -36.73845 -35.27083 -33.87096 -31.42976 -29.39372 -26.83155 -26.66572 -24.97870 -22.65189 -21.86298 -21.43768 -19.90181 -18.82471 -18.61504 -18.19366 -17.55995 -17.17225 -16.95695 -16.42776 -15.84478 -15.63883 -15.48725 -15.00114 -14.87718 -14.60402 -13.88176 -13.48753 -13.39633 -13.30110 -13.25736 -13.20852 -13.11628 -12.84379 -12.79319 -12.66144 -12.34140 -11.96832 -11.90139 -11.67309 -11.55199 -11.30612 -11.08953 -10.91607 -10.09631 -9.00784 -7.95169 -5.31323 -1.13510 1.30388 1.44079 1.47149 1.56490 1.63856 1.87095 2.45957 2.57379 2.95130 3.20558 3.30513 3.35281 3.52343 3.71882 3.77434 3.84168 4.11011 4.20083 4.29239 4.45255 4.63092 4.69877 4.70940 4.86798 5.02027 5.04613 5.09118 5.19086 5.24584 5.44702 5.59636 5.84579 6.38931 6.83942 7.06735 7.55130 8.48005 9.22476 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.033803 B = 0.003878 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.136789 B = 7219.095438 C = 7562.963991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.070 4.070 3 Si 0.985 3.015 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.261 1.261 7 C -0.239 4.239 8 H 0.095 0.905 9 N -0.638 5.638 10 C 0.124 3.876 11 C 0.118 3.882 12 N -0.704 5.704 13 C 0.532 3.468 14 O -0.558 6.558 15 C -0.580 4.580 16 H 0.198 0.802 17 C -0.106 4.106 18 C -0.114 4.114 19 C -0.555 4.555 20 S 2.370 3.630 21 O -0.956 6.956 22 O -0.981 6.981 23 C 0.150 3.850 24 H 0.249 0.751 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.416 0.584 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.131 0.869 33 H 0.169 0.831 34 H 0.150 0.850 35 H 0.021 0.979 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.409 -24.867 -1.076 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.812 3.188 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.185 1.185 7 C -0.367 4.367 8 H 0.112 0.888 9 N -0.365 5.365 10 C -0.001 4.001 11 C 0.012 3.988 12 N -0.356 5.356 13 C 0.317 3.683 14 O -0.437 6.437 15 C -0.690 4.690 16 H 0.215 0.785 17 C -0.144 4.144 18 C -0.152 4.152 19 C -0.689 4.689 20 S 2.557 3.443 21 O -0.953 6.953 22 O -0.978 6.978 23 C 0.023 3.977 24 H 0.058 0.942 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.253 0.747 29 H 0.103 0.897 30 H 0.143 0.857 31 H 0.134 0.866 32 H 0.149 0.851 33 H 0.187 0.813 34 H 0.168 0.832 35 H 0.038 0.962 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.684 -23.599 -0.945 24.545 hybrid contribution 0.461 1.067 -0.072 1.165 sum -6.223 -22.532 -1.016 23.397 Atomic orbital electron populations 1.70082 1.06942 1.25879 1.57566 1.25812 0.96495 1.01491 1.02469 0.84970 0.77937 0.78540 0.77327 1.21265 1.22335 1.18470 1.19477 0.91503 0.82860 1.42819 0.88778 1.46046 1.03029 1.02313 1.85129 1.23020 0.94889 0.83198 0.99002 1.23314 0.93194 0.84044 0.98243 1.45941 1.40377 1.31958 1.17322 1.19734 0.79730 0.82456 0.86381 1.90699 1.64460 1.69533 1.18966 1.30606 1.20658 1.04953 1.12789 0.78484 1.22132 0.99772 0.95828 0.96703 1.22412 0.90357 0.95968 1.06504 1.30501 1.11631 1.11989 1.14809 1.09710 0.80473 0.77207 0.76926 1.93589 1.85695 1.85289 1.30761 1.93635 1.83542 1.36303 1.84357 1.22549 0.87506 0.90816 0.96818 0.94216 0.90946 0.91607 0.88077 0.74731 0.89697 0.85729 0.86571 0.85122 0.81302 0.83225 0.96168 0.95343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.43 11.51 21.65 0.25 -61.18 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.98 47.01 29.56 68.60 2.03 49.04 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.24 -13.72 10.70 84.03 0.90 -12.82 16 8 H 0.09 5.03 7.83 -2.91 -0.02 5.01 16 9 N -0.64 -33.86 3.70 -716.68 -2.65 -36.51 16 10 C 0.12 4.81 8.69 86.49 0.75 5.56 16 11 C 0.12 4.73 4.40 46.75 0.21 4.93 16 12 N -0.70 -21.63 5.37 -447.36 -2.40 -24.04 16 13 C 0.53 15.93 6.35 87.66 0.56 16.49 16 14 O -0.56 -21.31 15.35 -3.04 -0.05 -21.36 16 15 C -0.58 -10.17 3.60 30.25 0.11 -10.06 16 16 H 0.20 1.80 8.14 -2.39 -0.02 1.78 16 17 C -0.11 -1.17 5.90 31.29 0.18 -0.98 16 18 C -0.11 -0.58 6.48 31.59 0.20 -0.37 16 19 C -0.55 -5.52 7.31 72.68 0.53 -4.99 16 20 S 2.37 51.61 5.95 -56.49 -0.34 51.27 16 21 O -0.96 -24.40 18.15 -127.49 -2.31 -26.71 16 22 O -0.98 -34.59 17.29 -127.49 -2.20 -36.79 16 23 C 0.15 7.87 7.24 86.44 0.63 8.49 16 24 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 25 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.07 2.22 8.11 -2.39 -0.02 2.20 16 27 H 0.10 4.34 7.51 -2.39 -0.02 4.32 16 28 H 0.42 9.65 8.71 -92.71 -0.81 8.85 16 29 H 0.08 1.36 6.88 -2.39 -0.02 1.34 16 30 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.17 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.03 1.73 7.37 -2.39 -0.02 1.71 16 Total: -1.00 -91.34 314.20 -2.85 -94.19 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.29 Total: 9.51 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 4.53 Total: 2.59 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -4.81 Total: -121.73 kcal Atomic # 8 Polarization: -80.30 SS G_CDS: -4.56 Total: -84.87 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Atomic # 16 Polarization: 51.61 SS G_CDS: -0.34 Total: 51.27 kcal Total: -91.34 -2.85 -94.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031415912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.012 kcal (2) G-P(sol) polarization free energy of solvation -91.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds