Wall clock time and date at job start Tue Mar 31 2020 04:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21278 * 120.00187 * 2 1 4 4 N 1.34781 * 119.99819 * 179.97438 * 2 1 3 5 5 C 1.47580 * 134.49338 * 179.97438 * 4 2 1 6 6 C 1.53946 * 86.24073 * 204.69863 * 5 4 2 7 7 O 1.42901 * 113.73907 * 90.68572 * 6 5 4 8 8 C 1.52996 * 113.74066 * 221.99074 * 6 5 4 9 9 N 1.46504 * 109.47088 * 180.02562 * 8 6 5 10 10 C 1.34772 * 119.99864 * 180.02562 * 9 8 6 11 11 O 1.21273 * 120.00682 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99894 * 179.97438 * 10 9 8 13 13 S 1.80999 * 109.47320 * 180.02562 * 12 10 9 14 14 C 1.76196 * 100.00099 * 180.02562 * 13 12 10 15 15 H 1.08006 * 120.00257 * 359.97438 * 14 13 12 16 16 C 1.38801 * 120.00283 * 179.97438 * 14 13 12 17 17 N 1.31628 * 120.00449 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99713 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47249 * 90.00054 * 18 16 14 20 20 H 1.48504 * 109.47058 * 210.00103 * 18 16 14 21 21 H 1.48504 * 109.47155 * 329.99818 * 18 16 14 22 22 C 1.47927 * 134.63065 * 0.08932 * 4 2 1 23 23 H 1.09002 * 109.47299 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47385 * 300.00048 * 1 2 3 25 25 H 1.09003 * 109.47357 * 60.00194 * 1 2 3 26 26 H 1.09002 * 113.76914 * 90.34174 * 5 4 2 27 27 H 1.09000 * 113.77064 * 319.05647 * 5 4 2 28 28 H 0.96697 * 113.99846 * 180.02562 * 7 6 5 29 29 H 1.09003 * 109.47405 * 300.00121 * 8 6 5 30 30 H 1.08994 * 109.47312 * 60.00445 * 8 6 5 31 31 H 0.96999 * 119.99758 * 359.97438 * 9 8 6 32 32 H 1.09003 * 109.46768 * 299.99837 * 12 10 9 33 33 H 1.09002 * 109.47078 * 59.99286 * 12 10 9 34 34 H 0.96996 * 120.00342 * 179.97438 * 17 16 14 35 35 H 1.09004 * 113.77332 * 40.99310 * 22 4 2 36 36 H 1.08998 * 113.87432 * 269.61195 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6096 -1.5367 0.0002 6 6 3.1623 -2.8630 -0.6406 7 8 3.1464 -2.8351 -2.0692 8 6 3.8758 -4.0922 -0.0742 9 7 3.3823 -5.2965 -0.7468 10 6 3.8712 -6.5058 -0.4080 11 8 4.7200 -6.5973 0.4533 12 6 3.3631 -7.7447 -1.0996 13 16 4.2061 -9.1990 -0.4285 14 6 3.4429 -10.4648 -1.3876 15 1 2.6948 -10.2082 -2.1232 16 6 3.8029 -11.7918 -1.1979 17 7 3.2324 -12.7375 -1.9140 18 14 5.0972 -12.2357 0.0738 19 1 4.4405 -12.4857 1.3820 20 1 5.8182 -13.4593 -0.3600 21 1 6.0619 -11.1149 0.2103 22 6 1.7887 -2.5936 -0.0005 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 4.0339 -1.6517 0.9977 27 1 4.2233 -0.9176 -0.6541 28 1 2.8656 -3.6664 -2.4757 29 1 4.9490 -3.9979 -0.2399 30 1 3.6784 -4.1663 0.9952 31 1 2.7031 -5.2234 -1.4355 32 1 2.2898 -7.8388 -0.9341 33 1 3.5607 -7.6708 -2.1690 34 1 3.4843 -13.6648 -1.7817 35 1 0.9471 -2.8175 -0.6560 36 1 1.6769 -3.0211 0.9959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041568674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:14 Heat of formation + Delta-G solvation = -80.551742 kcal Electronic energy + Delta-G solvation = -20016.068386 eV Core-core repulsion = 16628.227343 eV Total energy + Delta-G solvation = -3387.841043 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.16885 -39.44293 -38.50034 -35.85488 -34.37891 -32.50052 -31.46472 -30.23468 -28.59802 -26.85516 -25.84737 -25.49917 -21.23896 -20.81306 -19.64421 -18.33887 -17.55367 -17.22880 -16.72457 -16.32058 -16.01723 -15.58084 -15.43690 -15.02243 -14.60188 -14.39217 -14.08000 -13.76458 -13.48644 -13.35150 -13.07175 -12.92230 -12.85357 -12.49040 -12.44884 -12.06135 -11.46242 -11.32241 -11.06239 -10.76943 -10.69162 -10.13245 -9.92275 -9.71956 -9.27848 -9.19183 -9.05954 -8.58642 -6.99861 -6.34878 -4.07663 2.23850 2.32353 2.59809 2.78305 3.11427 3.27553 3.28304 3.45264 3.51305 3.69711 4.06689 4.16342 4.27283 4.50824 4.63545 4.73951 4.84519 4.87055 4.99234 5.04211 5.08665 5.14621 5.19043 5.27381 5.28600 5.48008 5.49448 5.64144 5.88762 6.17961 6.98564 7.21335 7.30719 7.75430 7.87931 8.27143 8.35196 9.11081 10.74257 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.046241 B = 0.002717 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.372639 B =10303.261661 C =10529.809111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.537 3.463 3 O -0.548 6.548 4 N -0.640 5.640 5 C 0.122 3.878 6 C 0.087 3.913 7 O -0.526 6.526 8 C 0.105 3.895 9 N -0.739 5.739 10 C 0.534 3.466 11 O -0.513 6.513 12 C -0.125 4.125 13 S -0.140 6.140 14 C -0.523 4.523 15 H 0.089 0.911 16 C 0.096 3.904 17 N -0.879 5.879 18 Si 0.857 3.143 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 C 0.076 3.924 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.382 0.618 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.395 0.605 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.271 0.729 35 H 0.092 0.908 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 20.809 2.551 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.328 3.672 3 O -0.425 6.425 4 N -0.376 5.376 5 C 0.000 4.000 6 C 0.044 3.956 7 O -0.332 6.332 8 C -0.020 4.020 9 N -0.396 5.396 10 C 0.320 3.680 11 O -0.386 6.386 12 C -0.276 4.276 13 S 0.086 5.914 14 C -0.670 4.670 15 H 0.107 0.893 16 C -0.113 4.113 17 N -0.516 5.516 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 C -0.047 4.047 23 H 0.094 0.906 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.113 0.887 28 H 0.231 0.769 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.230 0.770 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.837 21.849 4.044 22.549 hybrid contribution -1.173 -0.997 -0.993 1.832 sum -5.010 20.852 3.050 21.661 Atomic orbital electron populations 1.21802 0.91087 1.04296 1.05329 1.20490 0.90246 0.81505 0.74961 1.90738 1.70754 1.30403 1.50608 1.49935 1.08552 1.05399 1.73763 1.23189 0.84605 0.91398 1.00857 1.22977 0.94963 0.94988 0.82664 1.86605 1.90395 1.40114 1.16124 1.21813 0.99859 0.82438 0.97928 1.45877 1.44836 1.06010 1.42902 1.20304 0.81329 0.83754 0.82609 1.90723 1.30690 1.86065 1.31133 1.23286 1.04692 0.95937 1.03671 1.84831 1.55090 0.97523 1.53967 1.22296 1.27581 0.92139 1.25027 0.89340 1.24717 0.95831 0.95187 0.95573 1.69930 1.41601 1.00708 1.39313 0.86738 0.82968 0.80227 0.81929 1.19194 1.19898 1.15913 1.24124 0.98821 0.79749 1.02046 0.90625 0.88586 0.88608 0.87713 0.88654 0.76876 0.89815 0.89693 0.77018 0.88358 0.88282 0.91871 0.88987 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.34 36.00 0.37 -0.62 16 2 C 0.54 5.52 8.17 -10.99 -0.09 5.43 16 3 O -0.55 -8.09 17.83 5.56 0.10 -7.99 16 4 N -0.64 -5.42 3.62 -177.19 -0.64 -6.07 16 5 C 0.12 0.95 8.23 -2.97 -0.02 0.93 16 6 C 0.09 0.58 1.60 -89.70 -0.14 0.43 16 7 O -0.53 -3.98 13.51 -35.23 -0.48 -4.46 16 8 C 0.10 0.84 5.35 -4.04 -0.02 0.82 16 9 N -0.74 -6.88 5.34 -60.29 -0.32 -7.20 16 10 C 0.53 8.07 7.85 -10.98 -0.09 7.98 16 11 O -0.51 -9.90 15.86 5.56 0.09 -9.81 16 12 C -0.13 -2.14 6.16 36.01 0.22 -1.92 16 13 S -0.14 -3.36 18.55 -107.50 -1.99 -5.35 16 14 C -0.52 -14.45 10.04 30.94 0.31 -14.14 16 15 H 0.09 2.54 8.03 -52.48 -0.42 2.12 16 16 C 0.10 2.72 5.50 -17.43 -0.10 2.62 16 17 N -0.88 -25.85 13.97 55.49 0.78 -25.07 16 18 Si 0.86 21.13 27.74 -169.99 -4.71 16.41 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 22 C 0.08 0.42 7.55 -2.80 -0.02 0.40 16 23 H 0.07 0.31 7.24 -51.93 -0.38 -0.06 16 24 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.10 0.62 8.10 -51.93 -0.42 0.20 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.38 1.69 7.28 45.56 0.33 2.02 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.68 7.94 -51.93 -0.41 0.27 16 31 H 0.40 2.36 7.01 -40.82 -0.29 2.08 16 32 H 0.10 1.53 8.14 -51.91 -0.42 1.11 16 33 H 0.10 1.56 8.14 -51.92 -0.42 1.14 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.09 0.38 7.97 -51.93 -0.41 -0.03 16 36 H 0.10 0.44 7.96 -51.93 -0.41 0.02 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -37.47 326.84 -5.94 -43.41 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -4.10 Total: -0.73 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 0.42 Total: 1.93 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.19 Total: -38.34 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.29 Total: -22.26 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.41 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -37.47 -5.94 -43.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041568674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.140 kcal (2) G-P(sol) polarization free energy of solvation -37.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds