Wall clock time and date at job start Tue Mar 31 2020 04:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21278 * 120.00187 * 2 1 4 4 N 1.34781 * 119.99819 * 179.97438 * 2 1 3 5 5 C 1.47580 * 134.49338 * 179.97438 * 4 2 1 6 6 C 1.53946 * 86.24073 * 204.69863 * 5 4 2 7 7 O 1.42901 * 113.73907 * 90.68572 * 6 5 4 8 8 C 1.52996 * 113.74066 * 221.99074 * 6 5 4 9 9 N 1.46504 * 109.47088 * 180.02562 * 8 6 5 10 10 C 1.34772 * 119.99864 * 180.02562 * 9 8 6 11 11 O 1.21273 * 120.00682 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99894 * 179.97438 * 10 9 8 13 13 S 1.80999 * 109.47320 * 180.02562 * 12 10 9 14 14 C 1.76196 * 100.00099 * 180.02562 * 13 12 10 15 15 H 1.08006 * 120.00257 * 359.97438 * 14 13 12 16 16 C 1.38801 * 120.00283 * 179.97438 * 14 13 12 17 17 N 1.31628 * 120.00449 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99713 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47249 * 90.00054 * 18 16 14 20 20 H 1.48504 * 109.47058 * 210.00103 * 18 16 14 21 21 H 1.48504 * 109.47155 * 329.99818 * 18 16 14 22 22 C 1.47927 * 134.63065 * 0.08932 * 4 2 1 23 23 H 1.09002 * 109.47299 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47385 * 300.00048 * 1 2 3 25 25 H 1.09003 * 109.47357 * 60.00194 * 1 2 3 26 26 H 1.09002 * 113.76914 * 90.34174 * 5 4 2 27 27 H 1.09000 * 113.77064 * 319.05647 * 5 4 2 28 28 H 0.96697 * 113.99846 * 180.02562 * 7 6 5 29 29 H 1.09003 * 109.47405 * 300.00121 * 8 6 5 30 30 H 1.08994 * 109.47312 * 60.00445 * 8 6 5 31 31 H 0.96999 * 119.99758 * 359.97438 * 9 8 6 32 32 H 1.09003 * 109.46768 * 299.99837 * 12 10 9 33 33 H 1.09002 * 109.47078 * 59.99286 * 12 10 9 34 34 H 0.96996 * 120.00342 * 179.97438 * 17 16 14 35 35 H 1.09004 * 113.77332 * 40.99310 * 22 4 2 36 36 H 1.08998 * 113.87432 * 269.61195 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6096 -1.5367 0.0002 6 6 3.1623 -2.8630 -0.6406 7 8 3.1464 -2.8351 -2.0692 8 6 3.8758 -4.0922 -0.0742 9 7 3.3823 -5.2965 -0.7468 10 6 3.8712 -6.5058 -0.4080 11 8 4.7200 -6.5973 0.4533 12 6 3.3631 -7.7447 -1.0996 13 16 4.2061 -9.1990 -0.4285 14 6 3.4429 -10.4648 -1.3876 15 1 2.6948 -10.2082 -2.1232 16 6 3.8029 -11.7918 -1.1979 17 7 3.2324 -12.7375 -1.9140 18 14 5.0972 -12.2357 0.0738 19 1 4.4405 -12.4857 1.3820 20 1 5.8182 -13.4593 -0.3600 21 1 6.0619 -11.1149 0.2103 22 6 1.7887 -2.5936 -0.0005 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 4.0339 -1.6517 0.9977 27 1 4.2233 -0.9176 -0.6541 28 1 2.8656 -3.6664 -2.4757 29 1 4.9490 -3.9979 -0.2399 30 1 3.6784 -4.1663 0.9952 31 1 2.7031 -5.2234 -1.4355 32 1 2.2898 -7.8388 -0.9341 33 1 3.5607 -7.6708 -2.1690 34 1 3.4843 -13.6648 -1.7817 35 1 0.9471 -2.8175 -0.6560 36 1 1.6769 -3.0211 0.9959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041568674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:12 Heat of formation + Delta-G solvation = -112.598617 kcal Electronic energy + Delta-G solvation = -20017.458043 eV Core-core repulsion = 16628.227343 eV Total energy + Delta-G solvation = -3389.230700 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.82606 -40.52579 -39.34917 -36.55882 -35.31456 -34.64407 -32.22410 -31.27008 -29.39580 -27.84310 -27.37931 -26.41748 -21.95914 -21.83795 -20.29360 -19.95631 -18.50642 -18.13294 -17.72297 -17.15938 -17.07382 -16.70116 -16.59968 -16.32071 -15.76352 -15.28779 -15.12173 -14.88990 -14.68413 -14.38065 -14.06821 -13.91192 -13.39455 -13.31694 -13.24073 -13.05695 -12.99384 -12.98147 -12.65656 -12.07978 -11.84263 -11.39659 -11.14806 -11.04222 -10.83177 -10.49294 -10.20354 -9.86344 -8.95956 -8.49289 -6.19264 1.01878 1.33317 1.48455 1.52673 1.57057 1.58419 1.73404 2.15820 2.26900 2.73306 2.75590 2.89409 3.11615 3.50516 3.57645 3.84639 3.99835 4.27026 4.29415 4.41020 4.46396 4.51413 4.53701 4.58139 4.63221 4.70310 4.74590 4.84407 5.02811 5.28283 5.73079 6.14532 6.36839 6.58053 6.60212 6.96512 7.03411 7.18152 8.62867 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.046241 B = 0.002717 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.372639 B =10303.261661 C =10529.809111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.525 3.475 3 O -0.607 6.607 4 N -0.644 5.644 5 C 0.109 3.891 6 C 0.101 3.899 7 O -0.542 6.542 8 C 0.109 3.891 9 N -0.710 5.710 10 C 0.541 3.459 11 O -0.559 6.559 12 C -0.112 4.112 13 S -0.180 6.180 14 C -0.526 4.526 15 H 0.065 0.935 16 C 0.044 3.956 17 N -0.918 5.918 18 Si 0.913 3.087 19 H -0.263 1.263 20 H -0.263 1.263 21 H -0.236 1.236 22 C 0.083 3.917 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.122 0.878 27 H 0.075 0.925 28 H 0.395 0.605 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.416 0.584 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.276 0.724 35 H 0.115 0.885 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 21.437 3.037 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.317 3.683 3 O -0.489 6.489 4 N -0.379 5.379 5 C -0.014 4.014 6 C 0.059 3.941 7 O -0.351 6.351 8 C -0.015 4.015 9 N -0.366 5.366 10 C 0.326 3.674 11 O -0.436 6.436 12 C -0.263 4.263 13 S 0.047 5.953 14 C -0.674 4.674 15 H 0.083 0.917 16 C -0.161 4.161 17 N -0.556 5.556 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.188 1.188 21 H -0.159 1.159 22 C -0.039 4.039 23 H 0.119 0.881 24 H 0.123 0.877 25 H 0.119 0.881 26 H 0.140 0.860 27 H 0.094 0.906 28 H 0.247 0.753 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.254 0.746 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.133 0.867 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.818 22.464 4.491 23.410 hybrid contribution -0.940 -1.066 -1.232 1.881 sum -5.758 21.398 3.259 22.398 Atomic orbital electron populations 1.21827 0.87781 1.06128 1.05984 1.21307 0.91919 0.81064 0.73970 1.90703 1.72173 1.32523 1.53490 1.50084 1.08984 1.06333 1.72466 1.23375 0.84591 0.91751 1.01702 1.22753 0.95638 0.93382 0.82370 1.86603 1.90610 1.41353 1.16523 1.21865 0.99438 0.81863 0.98364 1.45512 1.44034 1.04598 1.42489 1.19878 0.80951 0.84579 0.81968 1.90721 1.32899 1.86749 1.33243 1.23284 1.05014 0.93610 1.04399 1.84773 1.56390 0.99928 1.54220 1.22469 1.26818 0.93497 1.24569 0.91720 1.25562 0.97773 0.95374 0.97411 1.70012 1.43285 1.01284 1.41033 0.85881 0.80733 0.80135 0.79714 1.18731 1.18760 1.15939 1.24333 0.98562 0.77496 1.03498 0.88142 0.87709 0.88096 0.85988 0.90607 0.75291 0.90915 0.88809 0.74635 0.86287 0.86579 0.91462 0.86717 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 10.34 71.23 0.74 -0.79 16 2 C 0.52 10.24 8.17 87.65 0.72 10.96 16 3 O -0.61 -18.29 17.83 -3.02 -0.05 -18.34 16 4 N -0.64 -9.63 3.62 -836.31 -3.03 -12.66 16 5 C 0.11 1.55 8.23 86.48 0.71 2.26 16 6 C 0.10 1.06 1.60 -10.15 -0.02 1.04 16 7 O -0.54 -6.72 13.51 -148.98 -2.01 -8.73 16 8 C 0.11 1.44 5.35 86.38 0.46 1.90 16 9 N -0.71 -10.72 5.34 -463.07 -2.47 -13.20 16 10 C 0.54 14.94 7.85 87.66 0.69 15.62 16 11 O -0.56 -20.66 15.86 -3.01 -0.05 -20.71 16 12 C -0.11 -3.58 6.16 71.24 0.44 -3.14 16 13 S -0.18 -8.43 18.55 -56.49 -1.05 -9.48 16 14 C -0.53 -29.10 10.04 67.95 0.68 -28.42 16 15 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 16 C 0.04 2.50 5.50 84.86 0.47 2.97 16 17 N -0.92 -54.42 13.97 21.65 0.30 -54.12 16 18 Si 0.91 43.54 27.74 68.60 1.90 45.44 16 19 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.24 -11.16 6.74 99.48 0.67 -10.49 16 22 C 0.08 0.59 7.55 86.41 0.65 1.24 16 23 H 0.10 0.44 7.24 -2.39 -0.02 0.42 16 24 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.12 1.27 8.10 -2.39 -0.02 1.25 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.40 2.09 7.28 -74.06 -0.54 1.55 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.18 7.94 -2.39 -0.02 1.16 16 31 H 0.42 3.15 7.01 -92.71 -0.65 2.50 16 32 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 33 H 0.12 3.34 8.14 -2.39 -0.02 3.33 16 34 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.11 0.37 7.97 -2.39 -0.02 0.35 16 36 H 0.12 0.47 7.96 -2.39 -0.02 0.46 16 Total: -1.00 -83.58 326.84 -1.03 -84.61 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -0.11 Total: 3.55 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 5.54 Total: 3.65 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -5.20 Total: -79.98 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -2.11 Total: -47.79 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.90 Total: 45.44 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.05 Total: -9.48 kcal Total: -83.58 -1.03 -84.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041568674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.988 kcal (2) G-P(sol) polarization free energy of solvation -83.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds