Wall clock time and date at job start Tue Mar 31 2020 04:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21278 * 119.99558 * 2 1 4 4 N 1.34775 * 120.00322 * 180.02562 * 2 1 3 5 5 C 1.46505 * 120.99982 * 0.56812 * 4 2 1 6 6 C 1.51822 * 111.09162 * 128.76796 * 5 4 2 7 7 N 1.44360 * 114.58452 * 27.98739 * 6 5 4 8 8 C 1.36935 * 116.86916 * 157.26934 * 7 6 5 9 9 H 1.07994 * 120.00275 * 204.19508 * 8 7 6 10 10 C 1.38813 * 119.99956 * 24.19867 * 8 7 6 11 11 N 1.31618 * 120.00369 * 210.01914 * 10 8 7 12 12 Si 1.86804 * 119.99803 * 30.01628 * 10 8 7 13 13 H 1.48494 * 109.47092 * 272.82649 * 12 10 8 14 14 H 1.48502 * 109.46755 * 152.82728 * 12 10 8 15 15 H 1.48495 * 109.47322 * 32.83030 * 12 10 8 16 16 C 1.45346 * 126.26629 * 337.54881 * 7 6 5 17 17 H 1.08997 * 109.54271 * 152.83695 * 16 7 6 18 18 C 1.56548 * 109.82073 * 272.70333 * 16 7 6 19 19 S 1.82820 * 105.67335 * 146.08789 * 18 16 7 20 20 O 1.42094 * 109.34218 * 245.46697 * 19 18 16 21 21 O 1.42096 * 109.34158 * 112.29151 * 19 18 16 22 22 C 1.83202 * 97.07745 * 358.87874 * 19 18 16 23 23 C 1.46844 * 121.00397 * 180.58972 * 4 2 1 24 24 H 1.08999 * 110.39386 * 120.42450 * 23 4 2 25 25 H 1.09002 * 109.47267 * 234.87073 * 1 2 3 26 26 H 1.08994 * 109.47390 * 354.87106 * 1 2 3 27 27 H 1.09005 * 109.47266 * 114.87505 * 1 2 3 28 28 H 1.09003 * 109.15805 * 8.35714 * 5 4 2 29 29 H 1.09001 * 109.15444 * 249.18339 * 5 4 2 30 30 H 1.08998 * 108.46238 * 266.66015 * 6 5 4 31 31 H 1.09001 * 108.33059 * 149.21094 * 6 5 4 32 32 H 0.97004 * 119.99551 * 4.97946 * 11 10 8 33 33 H 1.09000 * 110.09056 * 27.04896 * 18 16 7 34 34 H 1.09000 * 110.26893 * 265.22048 * 18 16 7 35 35 H 1.09003 * 110.71429 * 219.08616 * 22 19 18 36 36 H 1.08996 * 110.71504 * 95.81605 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4708 -2.4485 -0.0135 6 6 1.9912 -3.3504 -1.1184 7 7 3.3694 -3.1210 -1.4818 8 6 4.0304 -4.1564 -2.0869 9 1 5.1074 -4.2150 -2.0321 10 6 3.3163 -5.1306 -2.7708 11 7 3.7799 -6.3606 -2.8386 12 14 1.6971 -4.6960 -3.5948 13 1 0.5896 -4.8387 -2.6159 14 1 1.4646 -5.6099 -4.7420 15 1 1.7500 -3.2941 -4.0815 16 6 4.1245 -1.8987 -1.2620 17 1 5.1847 -2.1358 -1.1747 18 6 3.9144 -0.9211 -2.4666 19 16 3.9514 0.7605 -1.7503 20 8 2.6736 1.3639 -1.8997 21 8 5.1144 1.4396 -2.2036 22 6 4.1844 0.2570 -0.0043 23 6 3.6491 -1.1928 0.0124 24 1 4.0120 -1.7217 0.8937 25 1 -0.3634 -0.5913 0.8405 26 1 -0.3634 1.0235 0.0919 27 1 -0.3634 -0.4323 -0.9324 28 1 0.4077 -2.2667 -0.1714 29 1 1.6092 -2.9439 0.9475 30 1 1.3720 -3.2045 -2.0035 31 1 1.8877 -4.3856 -0.7932 32 1 4.5824 -6.6039 -2.3511 33 1 2.9497 -1.1094 -2.9378 34 1 4.7181 -1.0394 -3.1935 35 1 3.5995 0.8918 0.6613 36 1 5.2399 0.2816 0.2664 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094593238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:31 Heat of formation + Delta-G solvation = -44.996975 kcal Electronic energy + Delta-G solvation = -23283.226682 eV Core-core repulsion = 19896.927409 eV Total energy + Delta-G solvation = -3386.299273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.86101 -39.18218 -37.82821 -36.89140 -36.02776 -35.34589 -33.50908 -31.31992 -29.69081 -29.17554 -26.67473 -24.76262 -24.11748 -21.87663 -20.35214 -19.75342 -19.27169 -18.28787 -17.94001 -17.47957 -16.93050 -16.58849 -16.41823 -16.08571 -16.00002 -15.42226 -15.03179 -14.84960 -14.40004 -14.36049 -13.86135 -13.67646 -13.41674 -13.34940 -13.11215 -12.99390 -12.82084 -12.67555 -12.42719 -12.36162 -12.06602 -11.79366 -11.69568 -11.38414 -11.13009 -10.55247 -10.13742 -9.73289 -9.07453 -8.62756 -5.54940 -0.77879 1.39928 1.55010 1.58153 1.71696 1.73696 1.86528 2.50385 2.66250 2.98596 3.13795 3.29668 3.40862 3.56451 3.67040 3.94509 3.98014 4.07764 4.21556 4.28857 4.43441 4.52105 4.59720 4.68230 4.72153 4.82922 4.85509 4.95665 5.04817 5.15772 5.45126 5.82025 6.24113 6.34846 6.87221 7.16311 7.53953 7.88794 8.79008 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.008182 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.683592 B = 3421.227412 C = 3976.434089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.498 3.502 3 O -0.545 6.545 4 N -0.616 5.616 5 C 0.104 3.896 6 C 0.118 3.882 7 N -0.586 5.586 8 C -0.356 4.356 9 H 0.046 0.954 10 C -0.046 4.046 11 N -0.938 5.938 12 Si 1.080 2.920 13 H -0.250 1.250 14 H -0.314 1.314 15 H -0.288 1.288 16 C 0.182 3.818 17 H 0.091 0.909 18 C -0.615 4.615 19 S 2.394 3.606 20 O -0.944 6.944 21 O -0.995 6.995 22 C -0.575 4.575 23 C 0.144 3.856 24 H 0.132 0.868 25 H 0.118 0.882 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.099 0.901 30 H 0.008 0.992 31 H 0.062 0.938 32 H 0.256 0.744 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.194 0.806 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.874 9.649 10.054 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.290 3.710 3 O -0.426 6.426 4 N -0.351 5.351 5 C -0.018 4.018 6 C -0.007 4.007 7 N -0.307 5.307 8 C -0.486 4.486 9 H 0.063 0.937 10 C -0.244 4.244 11 N -0.578 5.578 12 Si 0.907 3.093 13 H -0.175 1.175 14 H -0.243 1.243 15 H -0.215 1.215 16 C 0.071 3.929 17 H 0.109 0.891 18 C -0.748 4.748 19 S 2.581 3.419 20 O -0.941 6.941 21 O -0.993 6.993 22 C -0.706 4.706 23 C 0.038 3.962 24 H 0.150 0.850 25 H 0.136 0.864 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.144 0.856 29 H 0.117 0.883 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.145 0.855 35 H 0.210 0.790 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.903 10.525 8.694 15.774 hybrid contribution 1.921 -0.671 0.362 2.067 sum -5.982 9.854 9.056 14.659 Atomic orbital electron populations 1.21967 0.88589 1.06302 1.05807 1.21525 0.92671 0.81929 0.74894 1.90505 1.69543 1.33092 1.49430 1.47983 1.05932 1.07145 1.74048 1.21937 0.98277 0.82051 0.99575 1.20922 0.84198 0.99490 0.96130 1.43186 1.09441 1.10177 1.67939 1.20165 0.92298 1.02934 1.33164 0.93652 1.26971 1.06785 0.92684 0.97991 1.70973 1.23904 1.17792 1.45151 0.83666 0.74797 0.74269 0.76527 1.17476 1.24265 1.21527 1.21406 0.97530 0.85285 0.88698 0.89090 1.31697 1.10448 1.21271 1.11359 1.08610 0.74182 0.78175 0.80969 1.93612 1.40596 1.74687 1.85215 1.93485 1.51401 1.73028 1.81343 1.31464 1.11867 1.04589 1.22724 1.21883 0.80805 0.93765 0.99740 0.85006 0.86353 0.88795 0.88430 0.85633 0.88312 0.97444 0.91942 0.93462 0.86689 0.85455 0.78961 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 8.69 71.24 0.62 -2.27 16 2 C 0.50 12.77 6.66 87.66 0.58 13.35 16 3 O -0.55 -16.97 9.05 21.52 0.19 -16.78 16 4 N -0.62 -15.50 2.79 -795.84 -2.22 -17.72 16 5 C 0.10 2.37 6.38 85.99 0.55 2.92 16 6 C 0.12 4.07 4.40 86.39 0.38 4.45 16 7 N -0.59 -23.72 2.59 -680.87 -1.77 -25.49 16 8 C -0.36 -18.03 9.52 84.03 0.80 -17.23 16 9 H 0.05 2.51 7.88 -2.91 -0.02 2.49 16 10 C -0.05 -2.47 4.94 84.86 0.42 -2.05 16 11 N -0.94 -54.99 13.70 21.65 0.30 -54.69 16 12 Si 1.08 48.46 24.69 68.60 1.69 50.16 16 13 H -0.25 -9.49 6.62 99.48 0.66 -8.83 16 14 H -0.31 -14.92 7.11 99.48 0.71 -14.21 16 15 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 16 C 0.18 6.16 2.92 46.53 0.14 6.30 16 17 H 0.09 3.04 7.79 -2.39 -0.02 3.02 16 18 C -0.61 -21.25 6.91 73.22 0.51 -20.74 16 19 S 2.39 79.06 5.61 -56.49 -0.32 78.74 16 20 O -0.94 -36.03 13.89 -117.87 -1.64 -37.67 16 21 O -1.00 -38.41 18.14 -127.48 -2.31 -40.72 16 22 C -0.57 -14.36 6.16 72.51 0.45 -13.91 16 23 C 0.14 3.77 3.46 45.54 0.16 3.93 16 24 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 25 H 0.12 1.21 7.76 -2.39 -0.02 1.19 16 26 H 0.09 1.63 8.12 -2.39 -0.02 1.61 16 27 H 0.10 1.58 7.88 -2.38 -0.02 1.56 16 28 H 0.13 1.98 5.99 -2.39 -0.01 1.97 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.01 0.30 4.33 -2.39 -0.01 0.29 16 31 H 0.06 2.32 7.02 -2.39 -0.02 2.30 16 32 H 0.26 15.06 8.73 -92.71 -0.81 14.25 16 33 H 0.11 4.29 8.08 -2.39 -0.02 4.27 16 34 H 0.13 4.36 8.14 -2.39 -0.02 4.34 16 35 H 0.19 4.87 5.22 -63.01 -0.33 4.54 16 36 H 0.15 2.92 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -74.22 282.69 -0.78 -74.99 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.70 Total: 14.44 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 4.60 Total: -25.26 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -3.69 Total: -97.89 kcal Atomic # 8 Polarization: -91.41 SS G_CDS: -3.76 Total: -95.17 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.69 Total: 50.16 kcal Atomic # 16 Polarization: 79.06 SS G_CDS: -0.32 Total: 78.74 kcal Total: -74.22 -0.78 -74.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094593238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.996 kcal (2) G-P(sol) polarization free energy of solvation -74.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds