Wall clock time and date at job start Tue Mar 31 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34945 * 126.03739 * 2 1 4 4 C 1.35322 * 107.74397 * 180.15103 * 3 2 1 5 5 S 1.76199 * 126.03787 * 179.87355 * 4 3 2 6 6 O 1.42095 * 106.40227 * 156.17082 * 5 4 3 7 7 O 1.42107 * 106.40094 * 23.25498 * 5 4 3 8 8 N 1.65593 * 107.21807 * 269.71336 * 5 4 3 9 9 C 1.46506 * 120.00245 * 65.00204 * 8 5 4 10 10 C 1.50703 * 109.47289 * 164.99838 * 9 8 5 11 11 O 1.21285 * 119.99571 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.37091 * 119.99763 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00286 * 0.02562 * 13 12 10 15 15 C 1.38956 * 120.00028 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00028 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47454 * 59.99812 * 17 15 13 19 19 H 1.48496 * 109.47302 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47261 * 299.99805 * 17 15 13 21 21 C 1.39871 * 107.91799 * 359.60661 * 4 3 2 22 22 N 1.30834 * 108.20464 * 0.24977 * 21 4 3 23 23 H 1.09005 * 109.47043 * 270.25919 * 1 2 3 24 24 H 1.09001 * 109.47266 * 30.25679 * 1 2 3 25 25 H 1.09003 * 109.47578 * 150.26369 * 1 2 3 26 26 H 1.07999 * 126.12655 * 359.97438 * 3 2 1 27 27 H 0.97000 * 120.00411 * 244.99876 * 8 5 4 28 28 H 1.09001 * 109.47060 * 285.00288 * 9 8 5 29 29 H 1.09004 * 109.47073 * 44.99777 * 9 8 5 30 30 H 0.96998 * 120.00166 * 0.02562 * 12 10 9 31 31 H 0.96996 * 120.00054 * 180.02562 * 16 15 13 32 32 H 1.08000 * 125.89502 * 180.25693 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 16 4.9751 1.6939 -0.0080 6 8 6.0298 0.9151 0.5402 7 8 4.5723 2.9457 0.5307 8 7 5.3735 1.9724 -1.5910 9 6 4.4632 2.7304 -2.4530 10 6 5.1927 3.1593 -3.7001 11 8 6.3581 2.8607 -3.8538 12 7 4.5497 3.8737 -4.6448 13 6 5.2134 4.2643 -5.7790 14 1 6.2514 3.9991 -5.9156 15 6 4.5507 5.0013 -6.7528 16 7 3.2878 5.3244 -6.5864 17 14 5.4549 5.5329 -8.2986 18 1 5.9405 4.3325 -9.0256 19 1 4.5321 6.3007 -9.1726 20 1 6.6110 6.3876 -7.9266 21 6 3.5346 -0.7322 0.0036 22 7 2.2891 -1.1328 0.0055 23 1 -0.3633 0.0046 1.0277 24 1 -0.3634 0.8877 -0.5178 25 1 -0.3634 -0.8923 -0.5097 26 1 1.9281 2.1193 -0.0004 27 1 6.2096 1.6337 -1.9476 28 1 3.6146 2.1031 -2.7260 29 1 4.1068 3.6116 -1.9194 30 1 3.6175 4.1122 -4.5220 31 1 2.8251 5.8385 -7.2664 32 1 4.4053 -1.3711 0.0070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116422430.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:11 Heat of formation + Delta-G solvation = -61.542873 kcal Electronic energy + Delta-G solvation = -20362.393491 eV Core-core repulsion = 16871.836391 eV Total energy + Delta-G solvation = -3490.557100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.29149 -40.21131 -38.20794 -36.86314 -36.27657 -35.29630 -34.36607 -33.29119 -31.54475 -28.69456 -27.92894 -26.11067 -23.04580 -22.32213 -21.35141 -20.38731 -20.01880 -19.08382 -18.61053 -17.26843 -17.20916 -16.82901 -16.50194 -16.33531 -16.00363 -15.89488 -15.47331 -15.23359 -14.18102 -14.11623 -13.87306 -13.70161 -13.65104 -13.54906 -13.18664 -13.07288 -13.01356 -12.89351 -12.67538 -12.42138 -12.11147 -11.74838 -11.51928 -10.67806 -10.64080 -10.38527 -10.25810 -10.02787 -8.46821 -5.95370 -0.49878 0.54428 1.20129 1.41064 1.45183 1.48019 1.54960 1.99966 2.17871 2.33694 2.87682 3.10695 3.21178 3.26736 3.72585 3.81889 4.07567 4.14551 4.39924 4.43167 4.47042 4.52478 4.58056 4.69082 4.85743 5.29949 5.42842 5.80872 5.94608 6.07306 6.34931 6.56909 7.10824 7.52303 8.05790 8.69804 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021483 B = 0.004077 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.027601 B = 6866.411397 C = 7673.633821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.361 5.361 3 C 0.183 3.817 4 C -0.828 4.828 5 S 2.758 3.242 6 O -0.988 6.988 7 O -0.985 6.985 8 N -1.105 6.105 9 C 0.116 3.884 10 C 0.433 3.567 11 O -0.626 6.626 12 N -0.563 5.563 13 C -0.337 4.337 14 H 0.081 0.919 15 C -0.007 4.007 16 N -0.915 5.915 17 Si 0.991 3.009 18 H -0.272 1.272 19 H -0.271 1.271 20 H -0.273 1.273 21 C 0.125 3.875 22 N -0.323 5.323 23 H 0.098 0.902 24 H 0.124 0.876 25 H 0.097 0.903 26 H 0.229 0.771 27 H 0.423 0.577 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.401 0.599 31 H 0.279 0.721 32 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.201 -7.670 12.017 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.138 5.138 3 C 0.028 3.972 4 C -0.930 4.930 5 S 2.847 3.153 6 O -0.979 6.979 7 O -0.975 6.975 8 N -0.867 5.867 9 C -0.014 4.014 10 C 0.219 3.781 11 O -0.514 6.514 12 N -0.200 5.200 13 C -0.467 4.467 14 H 0.099 0.901 15 C -0.208 4.208 16 N -0.555 5.555 17 Si 0.814 3.186 18 H -0.198 1.198 19 H -0.195 1.195 20 H -0.198 1.198 21 C -0.064 4.064 22 N -0.143 5.143 23 H 0.116 0.884 24 H 0.143 0.857 25 H 0.116 0.884 26 H 0.245 0.755 27 H 0.260 0.740 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.236 0.764 31 H 0.088 0.912 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -10.346 -8.419 12.578 18.333 hybrid contribution 0.389 0.462 -1.239 1.378 sum -9.957 -7.957 11.339 17.059 Atomic orbital electron populations 1.22512 0.70873 1.06986 1.05671 1.49457 1.08862 1.03341 1.52140 1.23122 0.88556 0.95772 0.89773 1.31395 1.16639 1.08870 1.36072 0.99634 0.72381 0.72484 0.70804 1.93524 1.55396 1.72400 1.76562 1.93530 1.84235 1.42589 1.77124 1.55185 1.31807 1.69236 1.30452 1.20933 0.92183 0.98107 0.90147 1.20660 0.87892 0.83065 0.86459 1.90487 1.18952 1.61391 1.80528 1.41837 1.13766 1.47338 1.17036 1.19652 0.97206 1.33102 0.96720 0.90098 1.25987 0.96515 0.96351 1.01912 1.69641 1.10132 1.38739 1.36985 0.85020 0.77901 0.78395 0.77235 1.19772 1.19533 1.19830 1.23861 0.96251 0.92572 0.93711 1.77380 1.02097 1.09204 1.25588 0.88392 0.85735 0.88449 0.75452 0.74000 0.86971 0.86461 0.76421 0.91154 0.77413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 11.47 127.77 1.47 2.07 16 2 N -0.36 -6.34 4.01 -369.55 -1.48 -7.83 16 3 C 0.18 3.18 11.23 83.54 0.94 4.12 16 4 C -0.83 -18.54 6.14 21.99 0.14 -18.41 16 5 S 2.76 73.94 5.88 -56.49 -0.33 73.60 16 6 O -0.99 -31.71 17.87 -128.00 -2.29 -34.00 16 7 O -0.98 -29.79 17.31 -128.00 -2.22 -32.01 16 8 N -1.11 -32.79 5.93 -190.77 -1.13 -33.92 16 9 C 0.12 3.54 6.70 85.63 0.57 4.11 16 10 C 0.43 19.14 7.85 87.66 0.69 19.83 16 11 O -0.63 -32.58 15.30 -3.05 -0.05 -32.63 16 12 N -0.56 -26.95 5.29 -306.99 -1.62 -28.57 16 13 C -0.34 -18.25 9.68 84.04 0.81 -17.43 16 14 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 15 C -0.01 -0.35 5.50 84.93 0.47 0.11 16 16 N -0.91 -46.77 13.05 21.66 0.28 -46.49 16 17 Si 0.99 41.24 29.55 68.60 2.03 43.27 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 19 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 C 0.13 2.89 11.81 85.24 1.01 3.90 16 22 N -0.32 -7.59 12.58 -57.02 -0.72 -8.31 16 23 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 24 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 25 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.23 2.17 8.06 -2.91 -0.02 2.15 16 27 H 0.42 13.69 7.70 -96.75 -0.75 12.94 16 28 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.12 3.08 7.75 -2.38 -0.02 3.06 16 30 H 0.40 17.74 7.90 -92.71 -0.73 17.01 16 31 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 32 H 0.21 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -77.48 306.00 -1.73 -79.21 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -0.29 Total: 29.36 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 6.09 Total: -1.69 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -4.67 Total: -125.12 kcal Atomic # 8 Polarization: -94.09 SS G_CDS: -4.55 Total: -98.64 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 73.94 SS G_CDS: -0.33 Total: 73.60 kcal Total: -77.48 -1.73 -79.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116422430.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.662 kcal (2) G-P(sol) polarization free energy of solvation -77.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds