Wall clock time and date at job start Tue Mar 31 2020 03:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86809 * 120.00182 * 2 1 4 4 H 1.48500 * 109.46984 * 269.99536 * 3 2 1 5 5 H 1.48504 * 109.46843 * 29.99372 * 3 2 1 6 6 H 1.48497 * 109.46888 * 149.99482 * 3 2 1 7 7 C 1.39031 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00329 * 180.02562 * 7 2 1 9 9 N 1.36893 * 120.00100 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99873 * 180.27662 * 9 7 2 11 11 O 1.21603 * 120.00257 * 359.71971 * 10 9 7 12 12 C 1.47577 * 119.99657 * 179.72272 * 10 9 7 13 13 C 1.39724 * 120.17411 * 359.72559 * 12 10 9 14 14 C 1.37842 * 119.87274 * 179.72006 * 13 12 10 15 15 C 1.38475 * 120.22274 * 0.55388 * 14 13 12 16 16 S 1.76200 * 119.82723 * 179.69689 * 15 14 13 17 17 N 1.65594 * 107.22010 * 270.02611 * 16 15 14 18 18 O 1.42105 * 106.39783 * 23.56046 * 16 15 14 19 19 O 1.42095 * 106.40299 * 156.48184 * 16 15 14 20 20 C 1.38225 * 120.35147 * 359.71884 * 15 14 13 21 21 C 1.38301 * 120.12013 * 0.02562 * 20 15 14 22 22 F 1.35105 * 120.10862 * 179.97438 * 21 20 15 23 23 H 0.97004 * 120.00408 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99581 * 359.97438 * 9 7 2 25 25 H 1.07999 * 120.06491 * 359.97438 * 13 12 10 26 26 H 1.07997 * 119.88921 * 180.27255 * 14 13 12 27 27 H 0.96999 * 120.00433 * 150.00153 * 17 16 15 28 28 H 0.97005 * 119.99902 * 329.99752 * 17 16 15 29 29 H 1.08000 * 119.94028 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4953 2.0464 -1.4001 5 1 1.4451 2.6528 0.6999 6 1 3.5452 1.4401 0.7001 7 6 2.0088 -1.2040 0.0005 8 1 3.0888 -1.2041 0.0010 9 7 1.3243 -2.3896 0.0005 10 6 1.9983 -3.5568 0.0067 11 8 3.2143 -3.5568 0.0071 12 6 1.2603 -4.8348 0.0129 13 6 -0.1369 -4.8389 0.0182 14 6 -0.8199 -6.0363 0.0181 15 6 -0.1259 -7.2346 0.0244 16 16 -1.0095 -8.7590 0.0323 17 7 -1.2561 -9.1745 1.6162 18 8 -2.2918 -8.4823 -0.5141 19 8 -0.1294 -9.7358 -0.5065 20 6 1.2563 -7.2412 0.0249 21 6 1.9561 -6.0483 0.0197 22 9 3.3071 -6.0551 0.0207 23 1 -0.4851 0.8400 -0.0004 24 1 0.3543 -2.3895 0.0005 25 1 -0.6807 -3.9059 0.0181 26 1 -1.8998 -6.0398 0.0177 27 1 -2.0400 -9.6879 1.8666 28 1 -0.6164 -8.9045 2.2936 29 1 1.7908 -8.1797 0.0294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116448623.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:30 Heat of formation + Delta-G solvation = -130.277246 kcal Electronic energy + Delta-G solvation = -20086.829268 eV Core-core repulsion = 16437.538565 eV Total energy + Delta-G solvation = -3649.290703 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.041 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.41841 -39.33314 -37.64522 -37.25562 -35.93340 -34.35951 -33.37898 -32.05964 -31.00344 -30.45978 -25.79727 -23.91370 -22.59160 -20.16572 -19.63499 -18.75006 -18.28665 -17.53335 -17.00918 -16.63668 -16.23793 -15.49697 -15.30036 -15.17272 -15.01006 -14.32336 -14.07211 -13.59667 -13.54087 -12.88288 -12.48122 -12.34983 -12.27392 -12.20175 -12.10941 -11.89164 -11.62961 -11.34366 -11.00218 -10.68002 -10.59394 -10.52778 -9.90284 -9.27523 -8.71417 -8.69692 -8.37088 -6.88261 -4.12071 0.20716 0.50091 1.22682 2.80990 3.01949 3.06733 3.12310 3.19053 3.57862 3.84627 4.10671 4.23084 4.46046 4.60559 4.82041 4.94704 4.99552 5.29433 5.47352 5.60818 5.77680 5.85407 6.02365 6.19559 6.29719 6.82291 6.85317 7.12975 7.64877 8.18818 8.75725 9.07737 9.69128 10.26792 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.031939 B = 0.004002 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.473465 B = 6995.520052 C = 7688.668498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.024 3.976 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.281 4.281 8 H 0.115 0.885 9 N -0.526 5.526 10 C 0.443 3.557 11 O -0.583 6.583 12 C -0.069 4.069 13 C -0.108 4.108 14 C -0.029 4.029 15 C -0.667 4.667 16 S 2.709 3.291 17 N -1.249 6.249 18 O -0.963 6.963 19 O -0.963 6.963 20 C -0.065 4.065 21 C 0.115 3.885 22 F -0.113 7.113 23 H 0.282 0.718 24 H 0.395 0.605 25 H 0.145 0.855 26 H 0.147 0.853 27 H 0.419 0.581 28 H 0.418 0.582 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 -12.450 3.980 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.182 4.182 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.411 4.411 8 H 0.132 0.868 9 N -0.159 5.159 10 C 0.232 3.768 11 O -0.470 6.470 12 C -0.075 4.075 13 C -0.129 4.129 14 C -0.048 4.048 15 C -0.756 4.756 16 S 2.797 3.203 17 N -0.923 5.923 18 O -0.953 6.953 19 O -0.952 6.952 20 C -0.086 4.086 21 C 0.092 3.908 22 F -0.091 7.091 23 H 0.092 0.908 24 H 0.231 0.769 25 H 0.163 0.837 26 H 0.165 0.835 27 H 0.249 0.751 28 H 0.245 0.755 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.559 -12.628 3.040 14.128 hybrid contribution 0.252 1.418 0.689 1.596 sum -5.307 -11.210 3.729 12.951 Atomic orbital electron populations 1.69578 1.06360 1.29631 1.45399 1.25545 0.95822 1.00642 0.96195 0.85661 0.79373 0.79344 0.78959 1.19768 1.20375 1.18832 1.20057 0.94200 0.81888 1.44953 0.86773 1.42042 1.09719 1.04885 1.59275 1.17426 0.87679 0.82861 0.88848 1.90699 1.12467 1.86313 1.57491 1.20890 0.94318 0.94631 0.97629 1.21427 0.92510 0.99127 0.99788 1.20802 1.00345 0.90579 0.93098 1.30341 1.04762 1.19549 1.20945 1.01323 0.73384 0.73330 0.72267 1.53147 1.37501 1.72847 1.28784 1.93594 1.40006 1.85232 1.76482 1.93606 1.67317 1.57852 1.76462 1.20729 0.92607 0.97978 0.97266 1.17597 0.77911 0.92855 1.02397 1.91589 1.27293 1.97107 1.93148 0.90770 0.76946 0.83736 0.83525 0.75074 0.75476 0.83056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.43 13.05 55.50 0.72 -20.70 15 2 C 0.02 0.58 5.50 -17.46 -0.10 0.48 15 3 Si 0.94 19.19 29.55 -169.99 -5.02 14.17 15 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 5 H -0.28 -5.53 7.11 56.52 0.40 -5.12 15 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 15 7 C -0.28 -7.33 9.68 -15.00 -0.15 -7.47 15 8 H 0.11 3.11 7.15 -52.49 -0.38 2.74 15 9 N -0.53 -12.76 5.23 -11.91 -0.06 -12.82 15 10 C 0.44 10.69 7.72 -12.45 -0.10 10.59 15 11 O -0.58 -16.21 14.91 5.27 0.08 -16.14 15 12 C -0.07 -1.34 5.88 -104.92 -0.62 -1.96 15 13 C -0.11 -1.71 9.54 -39.17 -0.37 -2.08 15 14 C -0.03 -0.38 9.50 -39.64 -0.38 -0.75 15 15 C -0.67 -8.54 5.98 -39.50 -0.24 -8.77 15 16 S 2.71 29.09 6.28 -107.50 -0.67 28.42 15 17 N -1.25 -8.02 9.52 60.35 0.57 -7.44 15 18 O -0.96 -12.82 17.27 -57.17 -0.99 -13.80 15 19 O -0.96 -13.24 17.26 -57.17 -0.99 -14.23 15 20 C -0.07 -0.94 9.48 -39.56 -0.38 -1.32 15 21 C 0.11 2.10 7.29 -38.94 -0.28 1.82 15 22 F -0.11 -2.33 15.55 2.25 0.04 -2.29 15 23 H 0.28 6.47 8.31 -40.82 -0.34 6.13 15 24 H 0.40 8.84 5.93 -40.82 -0.24 8.59 15 25 H 0.15 2.14 6.41 -52.49 -0.34 1.80 15 26 H 0.15 1.56 7.60 -52.49 -0.40 1.16 15 27 H 0.42 1.87 8.96 -34.47 -0.31 1.56 15 28 H 0.42 1.92 8.96 -34.47 -0.31 1.61 15 29 H 0.15 1.83 7.60 -52.49 -0.40 1.43 15 LS Contribution 281.43 15.07 4.24 4.24 Total: -1.00 -34.09 281.43 -6.18 -40.27 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -1.50 Total: 9.78 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.60 Total: -9.46 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 1.24 Total: -40.97 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -1.90 Total: -44.17 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 16 Polarization: 29.09 SS G_CDS: -0.67 Total: 28.42 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.09 -6.18 -40.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116448623.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.002 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds