Wall clock time and date at job start Tue Mar 31 2020 03:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48498 * 109.47154 * 239.99377 * 3 2 1 5 5 H 1.48501 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47015 * 119.99610 * 3 2 1 7 7 C 1.38954 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99965 * 180.02562 * 7 2 1 9 9 N 1.37090 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99930 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99774 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99865 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47024 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00267 * 179.97438 * 13 12 10 15 15 O 1.21611 * 119.99881 * 0.02562 * 14 13 12 16 16 C 1.47097 * 120.00176 * 180.02562 * 14 13 12 17 17 C 1.30974 * 121.56443 * 180.02562 * 16 14 13 18 18 C 1.51277 * 116.87610 * 179.97438 * 17 16 14 19 19 S 1.84171 * 103.08857 * 16.89068 * 18 17 16 20 20 O 1.42104 * 110.01799 * 225.11574 * 19 18 17 21 21 O 1.42091 * 109.93842 * 90.37553 * 19 18 17 22 22 C 1.51280 * 121.56442 * 0.02562 * 16 14 13 23 23 H 0.96998 * 120.00076 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00501 * 359.97438 * 9 7 2 25 25 H 1.08990 * 109.47432 * 59.99864 * 12 10 9 26 26 H 1.08998 * 109.47284 * 299.99147 * 12 10 9 27 27 H 0.97005 * 119.99842 * 0.02562 * 13 12 10 28 28 H 1.08000 * 121.56189 * 359.95309 * 17 16 14 29 29 H 1.09007 * 110.69436 * 135.25963 * 18 17 16 30 30 H 1.08996 * 110.69430 * 258.46812 * 18 17 16 31 31 H 1.09002 * 110.69477 * 281.55500 * 22 16 14 32 32 H 1.08997 * 110.69244 * 44.58578 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2436 -4.8629 0.0010 13 7 2.1956 -5.9765 0.0017 14 6 1.7464 -7.2471 0.0019 15 8 0.5508 -7.4693 0.0010 16 6 2.7023 -8.3652 0.0032 17 6 2.2995 -9.6115 0.0029 18 6 3.3733 -10.6771 0.0038 19 16 4.8780 -9.7526 0.5261 20 8 5.9774 -10.1047 -0.3026 21 8 5.0043 -9.7922 1.9409 22 6 4.1966 -8.1295 0.0050 23 1 -0.4850 0.8400 -0.0004 24 1 0.3533 -2.3906 0.0005 25 1 0.6180 -4.9209 -0.8896 26 1 0.6161 -4.9205 0.8903 27 1 3.1493 -5.7992 0.0029 28 1 1.2501 -9.8664 0.0025 29 1 3.1359 -11.4626 0.7214 30 1 3.5038 -11.0931 -0.9952 31 1 4.5465 -7.8679 -0.9937 32 1 4.4630 -7.3520 0.7210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157077800.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:18 Heat of formation + Delta-G solvation = -119.388518 kcal Electronic energy + Delta-G solvation = -19949.542024 eV Core-core repulsion = 16424.183797 eV Total energy + Delta-G solvation = -3525.358227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.08532 -38.34698 -37.50734 -36.69412 -36.31303 -34.63593 -33.83332 -31.46906 -30.37745 -27.91356 -26.78599 -24.66157 -22.01155 -19.89347 -19.38575 -19.26928 -18.32135 -17.87624 -16.73789 -16.57216 -15.88582 -15.59674 -15.48835 -15.43575 -14.73358 -14.35087 -14.22625 -13.95788 -13.80562 -13.59045 -13.37798 -12.78973 -12.52590 -12.46138 -12.27988 -12.07513 -11.69081 -11.61318 -11.15041 -10.93721 -10.55044 -10.37160 -10.03114 -9.85864 -9.68969 -8.98599 -8.72641 -8.17066 -6.57462 -3.99832 -0.43790 0.85970 1.93391 3.00139 3.06011 3.10199 3.17662 3.18966 3.24137 3.59310 3.66026 3.95801 4.03278 4.12128 4.52413 4.69948 4.77903 4.81144 4.94222 5.10828 5.11664 5.50752 5.73086 5.83943 5.85878 5.97066 6.46856 7.40194 7.57870 7.84501 8.18208 8.37791 8.97997 9.31662 9.79077 10.59156 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033101 B = 0.003111 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.686081 B = 8997.631131 C = 9643.654841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.308 4.308 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.425 3.575 11 O -0.599 6.599 12 C 0.107 3.893 13 N -0.696 5.696 14 C 0.561 3.439 15 O -0.542 6.542 16 C -0.153 4.153 17 C -0.061 4.061 18 C -0.559 4.559 19 S 2.391 3.609 20 O -0.926 6.926 21 O -0.920 6.920 22 C -0.558 4.558 23 H 0.276 0.724 24 H 0.396 0.604 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.413 0.587 28 H 0.160 0.840 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.789 -18.451 -0.957 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.437 4.437 8 H 0.123 0.877 9 N -0.180 5.180 10 C 0.211 3.789 11 O -0.485 6.485 12 C -0.021 4.021 13 N -0.349 5.349 14 C 0.347 3.653 15 O -0.422 6.422 16 C -0.157 4.157 17 C -0.082 4.082 18 C -0.687 4.687 19 S 2.572 3.428 20 O -0.923 6.923 21 O -0.917 6.917 22 C -0.686 4.686 23 H 0.086 0.914 24 H 0.230 0.770 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.252 0.748 28 H 0.178 0.822 29 H 0.168 0.832 30 H 0.175 0.825 31 H 0.175 0.825 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.510 -18.653 -0.528 19.198 hybrid contribution -0.631 1.297 -0.417 1.502 sum 3.879 -17.356 -0.944 17.809 Atomic orbital electron populations 1.69599 1.06048 1.28765 1.48924 1.25338 0.95671 0.99999 0.96594 0.85859 0.78791 0.80033 0.79214 1.19731 1.20811 1.19708 1.19692 0.93475 0.81963 1.48559 0.87656 1.41782 1.09507 1.04458 1.62265 1.19688 0.88293 0.84950 0.86011 1.90497 1.13663 1.86772 1.57617 1.21029 0.91798 0.85639 1.03604 1.45610 1.11954 1.04495 1.72867 1.17707 0.87678 0.82623 0.77319 1.90812 1.15670 1.84827 1.50842 1.20627 0.92950 0.94921 1.07219 1.22698 1.01645 0.90424 0.93393 1.29731 1.15981 1.09575 1.13369 1.09280 0.77683 0.79757 0.76039 1.93656 1.47997 1.81021 1.69587 1.93673 1.85908 1.84829 1.27275 1.29643 1.01613 1.23316 1.13991 0.91442 0.76987 0.89481 0.89443 0.74820 0.82218 0.83248 0.82538 0.82471 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.39 13.05 55.50 0.72 -22.66 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 20.16 29.55 -169.99 -5.02 15.14 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.31 -8.17 9.68 -14.94 -0.14 -8.32 16 8 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.55 -13.13 5.29 -10.96 -0.06 -13.19 16 10 C 0.42 9.38 7.85 -10.98 -0.09 9.29 16 11 O -0.60 -14.76 15.24 5.54 0.08 -14.67 16 12 C 0.11 1.86 6.15 -5.19 -0.03 1.83 16 13 N -0.70 -10.79 5.50 -62.68 -0.34 -11.14 16 14 C 0.56 8.06 7.77 -12.67 -0.10 7.97 16 15 O -0.54 -9.24 16.39 5.27 0.09 -9.16 16 16 C -0.15 -1.54 5.89 -102.46 -0.60 -2.14 16 17 C -0.06 -0.48 9.88 -35.74 -0.35 -0.83 16 18 C -0.56 -2.68 7.41 36.29 0.27 -2.41 16 19 S 2.39 17.89 6.36 -107.50 -0.68 17.20 16 20 O -0.93 -9.66 18.17 -57.65 -1.05 -10.71 16 21 O -0.92 -10.39 18.17 -57.65 -1.05 -11.44 16 22 C -0.56 -4.36 6.41 36.29 0.23 -4.13 16 23 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 24 H 0.40 9.14 7.90 -40.82 -0.32 8.82 16 25 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.41 6.17 6.10 -40.82 -0.25 5.92 16 28 H 0.16 1.24 7.67 -52.49 -0.40 0.84 16 29 H 0.15 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.16 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.16 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.15 1.14 7.63 -51.93 -0.40 0.75 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -36.07 301.05 -6.68 -42.75 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -2.99 Total: 11.49 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.91 Total: 1.86 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.32 Total: -46.99 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -1.92 Total: -45.98 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 17.89 SS G_CDS: -0.68 Total: 17.20 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -36.07 -6.68 -42.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157077800.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.641 kcal (2) G-P(sol) polarization free energy of solvation -36.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds