Wall clock time and date at job start Tue Mar 31 2020 03:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48498 * 109.47154 * 239.99377 * 3 2 1 5 5 H 1.48501 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47015 * 119.99610 * 3 2 1 7 7 C 1.38954 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99965 * 180.02562 * 7 2 1 9 9 N 1.37090 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99930 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99774 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99865 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47024 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00267 * 179.97438 * 13 12 10 15 15 O 1.21611 * 119.99881 * 0.02562 * 14 13 12 16 16 C 1.47097 * 120.00176 * 180.02562 * 14 13 12 17 17 C 1.30974 * 121.56443 * 180.02562 * 16 14 13 18 18 C 1.51277 * 116.87610 * 179.97438 * 17 16 14 19 19 S 1.84171 * 103.08857 * 16.89068 * 18 17 16 20 20 O 1.42104 * 110.01799 * 225.11574 * 19 18 17 21 21 O 1.42091 * 109.93842 * 90.37553 * 19 18 17 22 22 C 1.51280 * 121.56442 * 0.02562 * 16 14 13 23 23 H 0.96998 * 120.00076 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00501 * 359.97438 * 9 7 2 25 25 H 1.08990 * 109.47432 * 59.99864 * 12 10 9 26 26 H 1.08998 * 109.47284 * 299.99147 * 12 10 9 27 27 H 0.97005 * 119.99842 * 0.02562 * 13 12 10 28 28 H 1.08000 * 121.56189 * 359.95309 * 17 16 14 29 29 H 1.09007 * 110.69436 * 135.25963 * 18 17 16 30 30 H 1.08996 * 110.69430 * 258.46812 * 18 17 16 31 31 H 1.09002 * 110.69477 * 281.55500 * 22 16 14 32 32 H 1.08997 * 110.69244 * 44.58578 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2436 -4.8629 0.0010 13 7 2.1956 -5.9765 0.0017 14 6 1.7464 -7.2471 0.0019 15 8 0.5508 -7.4693 0.0010 16 6 2.7023 -8.3652 0.0032 17 6 2.2995 -9.6115 0.0029 18 6 3.3733 -10.6771 0.0038 19 16 4.8780 -9.7526 0.5261 20 8 5.9774 -10.1047 -0.3026 21 8 5.0043 -9.7922 1.9409 22 6 4.1966 -8.1295 0.0050 23 1 -0.4850 0.8400 -0.0004 24 1 0.3533 -2.3906 0.0005 25 1 0.6180 -4.9209 -0.8896 26 1 0.6161 -4.9205 0.8903 27 1 3.1493 -5.7992 0.0029 28 1 1.2501 -9.8664 0.0025 29 1 3.1359 -11.4626 0.7214 30 1 3.5038 -11.0931 -0.9952 31 1 4.5465 -7.8679 -0.9937 32 1 4.4630 -7.3520 0.7210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157077800.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:16 Heat of formation + Delta-G solvation = -150.638004 kcal Electronic energy + Delta-G solvation = -19950.897103 eV Core-core repulsion = 16424.183797 eV Total energy + Delta-G solvation = -3526.713306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.26107 -40.04763 -38.24250 -37.49433 -37.05453 -36.29653 -35.41285 -33.40116 -31.11151 -29.23554 -27.60647 -26.41527 -23.05815 -21.44227 -20.51726 -20.06047 -19.92434 -18.99300 -17.72585 -17.36050 -17.08955 -16.90430 -16.74448 -16.47962 -16.28649 -15.76458 -15.58453 -15.18775 -14.61636 -14.35499 -14.20298 -14.03578 -13.61428 -13.55420 -13.44289 -13.27087 -13.20701 -12.91253 -12.48631 -12.37277 -12.14462 -11.59274 -11.57860 -11.09547 -10.59221 -10.58885 -10.24263 -10.10453 -8.52670 -6.02991 -1.03678 0.09113 1.35301 1.37044 1.42466 1.52976 1.87511 1.94358 2.04750 2.29748 2.52875 2.99069 3.08456 3.14678 3.34186 3.36145 3.94705 4.08605 4.19534 4.27693 4.34020 4.39883 4.42006 4.63509 4.85306 5.14239 5.20329 5.36767 5.89556 6.38836 6.47248 7.00712 7.02646 7.41915 7.92008 8.63884 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033101 B = 0.003111 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.686081 B = 8997.631131 C = 9643.654841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.087 0.913 9 N -0.557 5.557 10 C 0.430 3.570 11 O -0.625 6.625 12 C 0.118 3.882 13 N -0.702 5.702 14 C 0.561 3.439 15 O -0.573 6.573 16 C -0.182 4.182 17 C -0.032 4.032 18 C -0.531 4.531 19 S 2.410 3.590 20 O -0.956 6.956 21 O -0.962 6.962 22 C -0.559 4.559 23 H 0.280 0.720 24 H 0.399 0.601 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.415 0.585 28 H 0.167 0.833 29 H 0.181 0.819 30 H 0.193 0.807 31 H 0.173 0.827 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 -19.953 -1.425 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.105 0.895 9 N -0.193 5.193 10 C 0.217 3.783 11 O -0.513 6.513 12 C -0.009 4.009 13 N -0.355 5.355 14 C 0.350 3.650 15 O -0.455 6.455 16 C -0.186 4.186 17 C -0.053 4.053 18 C -0.661 4.661 19 S 2.595 3.405 20 O -0.953 6.953 21 O -0.959 6.959 22 C -0.686 4.686 23 H 0.090 0.910 24 H 0.234 0.766 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.254 0.746 28 H 0.184 0.816 29 H 0.199 0.801 30 H 0.210 0.790 31 H 0.190 0.810 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.386 -20.160 -0.985 20.655 hybrid contribution -0.644 1.623 -0.294 1.771 sum 3.742 -18.537 -1.279 18.954 Atomic orbital electron populations 1.69664 1.07000 1.29760 1.49081 1.26115 0.96518 1.02659 0.95683 0.84940 0.77745 0.76276 0.79115 1.19459 1.19630 1.19523 1.19708 0.93004 0.83565 1.50593 0.89537 1.41831 1.09617 1.04587 1.63238 1.20429 0.88153 0.85956 0.83744 1.90473 1.15155 1.87533 1.58143 1.20846 0.91672 0.83737 1.04674 1.45651 1.11672 1.04625 1.73591 1.18281 0.88039 0.82841 0.75886 1.90788 1.17159 1.85205 1.52342 1.20401 0.93101 0.94214 1.10903 1.23004 1.02727 0.90267 0.89311 1.29686 1.11532 1.08765 1.16091 1.08566 0.78083 0.79333 0.74512 1.93614 1.50498 1.81396 1.69834 1.93618 1.87021 1.85419 1.29880 1.29663 1.00307 1.23745 1.14909 0.91012 0.76638 0.88266 0.88409 0.74576 0.81602 0.80123 0.78981 0.80950 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.91 13.05 21.66 0.28 -47.63 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 3 Si 1.00 41.17 29.55 68.60 2.03 43.19 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.34 -18.40 9.68 84.04 0.81 -17.58 16 8 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 9 N -0.56 -27.34 5.29 -306.98 -1.62 -28.97 16 10 C 0.43 19.25 7.85 87.66 0.69 19.93 16 11 O -0.62 -31.37 15.24 -3.08 -0.05 -31.41 16 12 C 0.12 4.10 6.15 85.63 0.53 4.63 16 13 N -0.70 -21.55 5.50 -470.47 -2.59 -24.14 16 14 C 0.56 15.63 7.77 86.57 0.67 16.30 16 15 O -0.57 -19.02 16.39 -4.07 -0.07 -19.09 16 16 C -0.18 -3.35 5.89 -17.37 -0.10 -3.45 16 17 C -0.03 -0.40 9.88 25.86 0.26 -0.14 16 18 C -0.53 -2.78 7.41 71.42 0.53 -2.25 16 19 S 2.41 31.92 6.36 -56.49 -0.36 31.56 16 20 O -0.96 -18.61 18.17 -127.54 -2.32 -20.92 16 21 O -0.96 -20.96 18.17 -127.54 -2.32 -23.28 16 22 C -0.56 -8.10 6.41 71.42 0.46 -7.64 16 23 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 24 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 25 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 26 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 27 H 0.42 12.43 6.10 -92.70 -0.57 11.87 16 28 H 0.17 1.99 7.67 -2.91 -0.02 1.96 16 29 H 0.18 0.07 8.14 -2.38 -0.02 0.05 16 30 H 0.19 -0.08 8.14 -2.39 -0.02 -0.09 16 31 H 0.17 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.15 2.22 7.63 -2.39 -0.02 2.20 16 Total: -1.00 -78.45 301.05 -2.81 -81.25 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: -0.11 Total: 29.62 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 4.31 Total: 9.81 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -3.93 Total: -100.74 kcal Atomic # 8 Polarization: -89.96 SS G_CDS: -4.75 Total: -94.71 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 16 Polarization: 31.92 SS G_CDS: -0.36 Total: 31.56 kcal Total: -78.45 -2.81 -81.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157077800.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.384 kcal (2) G-P(sol) polarization free energy of solvation -78.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds