Wall clock time and date at job start Tue Mar 31 2020 03:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86796 * 119.99998 * 2 1 4 4 H 1.48501 * 109.47218 * 275.37257 * 3 2 1 5 5 H 1.48497 * 109.47383 * 35.37495 * 3 2 1 6 6 H 1.48504 * 109.47294 * 155.37506 * 3 2 1 7 7 C 1.39947 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00059 * 342.10008 * 7 2 1 9 9 C 1.41023 * 119.99681 * 162.09408 * 7 2 1 10 10 C 1.40998 * 120.70690 * 330.08365 * 9 7 2 11 11 C 1.38007 * 118.27957 * 179.97438 * 10 9 7 12 12 C 1.38683 * 119.62801 * 359.97438 * 11 10 9 13 13 N 1.31971 * 121.44993 * 0.02562 * 12 11 10 14 14 C 1.32266 * 121.85874 * 359.97438 * 13 12 11 15 15 N 1.38096 * 119.90341 * 180.02562 * 14 13 12 16 16 C 1.46504 * 119.99601 * 359.97438 * 15 14 13 17 17 C 1.53000 * 109.46776 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.47241 * 64.99998 * 17 16 15 19 19 P 1.61000 * 122.99832 * 179.97438 * 18 17 16 20 20 O 1.47999 * 109.47073 * 55.00116 * 19 18 17 21 21 O 1.60997 * 109.47310 * 174.99864 * 19 18 17 22 22 O 1.61005 * 109.47231 * 295.00043 * 19 18 17 23 23 H 0.97004 * 120.00108 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.86144 * 359.94858 * 10 9 7 25 25 H 1.08003 * 120.18578 * 179.97438 * 11 10 9 26 26 H 1.08000 * 119.27894 * 179.72300 * 12 11 10 27 27 H 0.97000 * 120.00386 * 179.97438 * 15 14 13 28 28 H 1.09001 * 109.47109 * 299.99914 * 16 15 14 29 29 H 1.08994 * 109.47389 * 60.00375 * 16 15 14 30 30 H 1.09006 * 109.47277 * 185.00000 * 17 16 15 31 31 H 1.08999 * 109.47316 * 304.99924 * 17 16 15 32 32 H 0.96699 * 114.00713 * 179.97438 * 21 19 18 33 33 H 0.96702 * 113.99955 * 299.99956 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3766 2.1120 -1.3939 5 1 1.5016 2.6172 0.8105 6 1 3.5924 1.4101 0.5834 7 6 2.0084 -1.2120 0.0005 8 1 1.5076 -2.1245 0.2884 9 6 3.3674 -1.2417 -0.3750 10 6 3.8782 -0.3121 -1.3039 11 6 5.2159 -0.3863 -1.6351 12 6 6.0133 -1.3602 -1.0530 13 7 5.5218 -2.2241 -0.1847 14 6 4.2489 -2.2057 0.1742 15 7 3.7776 -3.1288 1.0868 16 6 4.6870 -4.1268 1.6555 17 6 3.9180 -5.0206 2.6304 18 8 2.9340 -5.7700 1.9148 19 15 1.9395 -6.8166 2.6273 20 8 1.2108 -6.1378 3.7221 21 8 0.8850 -7.3759 1.5468 22 8 2.7921 -8.0425 3.2294 23 1 -0.4850 0.8401 -0.0004 24 1 3.2391 0.4384 -1.7452 25 1 5.6393 0.3102 -2.3437 26 1 7.0583 -1.4161 -1.3196 27 1 2.8444 -3.1164 1.3514 28 1 5.1031 -4.7375 0.8542 29 1 5.4951 -3.6221 2.1849 30 1 4.6110 -5.7050 3.1198 31 1 3.4276 -4.4014 3.3816 32 1 0.2534 -8.0134 1.9070 33 1 3.2963 -8.5340 2.5666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168586639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:10 Heat of formation + Delta-G solvation = -236.329381 kcal Electronic energy + Delta-G solvation = -20403.792296 eV Core-core repulsion = 16926.605110 eV Total energy + Delta-G solvation = -3477.187186 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.075 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -38.77448 -37.64658 -36.89006 -36.18852 -34.60313 -33.84592 -33.05256 -31.16667 -30.37419 -27.70659 -25.16747 -23.15324 -21.27369 -20.77451 -19.95480 -19.14377 -17.73014 -17.43381 -16.88098 -16.07545 -15.73702 -15.48049 -15.14215 -14.61662 -14.44288 -13.91159 -13.47388 -13.39007 -13.19968 -13.09044 -12.96577 -12.43778 -12.29049 -12.09303 -11.95686 -11.32510 -11.24730 -10.87500 -10.74493 -10.52227 -10.44088 -10.25022 -9.86155 -9.39892 -9.11448 -8.20074 -8.11115 -6.90974 -6.71520 -4.33059 1.19616 2.59118 2.78990 3.12788 3.23177 3.34508 3.55576 4.00696 4.21575 4.55158 4.62743 4.90316 5.13024 5.26633 5.48443 5.58568 5.90114 6.00350 6.13480 6.16099 6.39389 6.43293 6.58678 6.79215 6.85857 7.09761 7.36202 7.59184 7.61620 7.82227 8.11763 8.35716 8.42925 8.73517 8.82126 9.58834 10.11148 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.019221 B = 0.004805 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.369794 B = 5825.968278 C = 6855.990550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.085 3.915 3 Si 0.912 3.088 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.247 1.247 7 C -0.441 4.441 8 H 0.091 0.909 9 C 0.016 3.984 10 C -0.201 4.201 11 C -0.172 4.172 12 C 0.001 3.999 13 N -0.531 5.531 14 C 0.325 3.675 15 N -0.722 5.722 16 C 0.141 3.859 17 C 0.106 3.894 18 O -0.737 6.737 19 P 2.307 2.693 20 O -1.015 7.015 21 O -0.860 6.860 22 O -0.860 6.860 23 H 0.285 0.715 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.122 0.878 27 H 0.411 0.589 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.438 0.562 33 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 -13.693 3.653 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.134 4.134 3 Si 0.739 3.261 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.170 1.170 7 C -0.472 4.472 8 H 0.109 0.891 9 C 0.009 3.991 10 C -0.227 4.227 11 C -0.194 4.194 12 C -0.150 4.150 13 N -0.249 5.249 14 C 0.084 3.916 15 N -0.362 5.362 16 C 0.016 3.984 17 C 0.034 3.966 18 O -0.760 6.760 19 P 2.591 2.409 20 O -1.115 7.115 21 O -0.779 6.779 22 O -0.775 6.775 23 H 0.095 0.905 24 H 0.124 0.876 25 H 0.117 0.883 26 H 0.140 0.860 27 H 0.249 0.751 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.295 0.705 33 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 5.862 -13.703 3.998 15.431 hybrid contribution -0.625 0.702 -0.751 1.203 sum 5.237 -13.001 3.247 14.388 Atomic orbital electron populations 1.69709 1.07961 1.30162 1.35394 1.26085 0.94701 1.01501 0.91124 0.86277 0.81148 0.79980 0.78705 1.19791 1.21878 1.17048 1.19131 0.92656 0.96015 1.39360 0.89091 1.18071 0.93871 0.93440 0.93747 1.21005 0.95474 1.03973 1.02234 1.21274 0.94986 1.00617 1.02555 1.21366 0.98135 0.95713 0.99805 1.66601 1.13456 1.27170 1.17717 1.18421 0.88603 0.92383 0.92153 1.43718 1.11799 1.33192 1.47533 1.21101 0.92046 0.89503 0.95754 1.22715 0.87260 0.93094 0.93577 1.87885 1.59205 1.66107 1.62848 0.89219 0.51847 0.50920 0.48912 1.95228 1.76945 1.77790 1.61569 1.87645 1.57428 1.68748 1.64115 1.88171 1.72494 1.62610 1.54206 0.90489 0.87573 0.88311 0.86018 0.75118 0.91964 0.90817 0.91119 0.90055 0.70539 0.72329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.68 13.93 55.55 0.77 -20.90 16 2 C 0.08 2.23 5.42 -17.32 -0.09 2.14 16 3 Si 0.91 21.15 24.53 -169.99 -4.17 16.98 16 4 H -0.27 -6.11 6.71 56.52 0.38 -5.73 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.25 -5.94 6.85 56.52 0.39 -5.56 16 7 C -0.44 -11.85 8.94 -37.89 -0.34 -12.19 16 8 H 0.09 2.53 7.03 -52.49 -0.37 2.16 16 9 C 0.02 0.42 5.12 -106.47 -0.55 -0.12 16 10 C -0.20 -4.95 7.27 -38.62 -0.28 -5.23 16 11 C -0.17 -3.81 10.08 -39.50 -0.40 -4.21 16 12 C 0.00 0.02 11.17 -17.33 -0.19 -0.17 16 13 N -0.53 -12.23 9.54 -11.86 -0.11 -12.34 16 14 C 0.32 7.77 7.52 -155.02 -1.17 6.61 16 15 N -0.72 -14.95 5.56 -59.97 -0.33 -15.28 16 16 C 0.14 2.24 6.06 -4.04 -0.02 2.22 16 17 C 0.11 1.35 6.58 37.16 0.24 1.60 16 18 O -0.74 -9.77 10.14 -15.13 -0.15 -9.93 16 19 P 2.31 25.86 7.35 -42.89 -0.32 25.55 16 20 O -1.01 -17.82 18.58 -12.94 -0.24 -18.06 16 21 O -0.86 -8.18 14.06 -15.13 -0.21 -8.40 16 22 O -0.86 -6.26 14.06 -15.13 -0.21 -6.47 16 23 H 0.28 6.95 8.30 -40.82 -0.34 6.62 16 24 H 0.11 2.59 4.82 -52.49 -0.25 2.33 16 25 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 26 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.41 8.74 6.76 -40.82 -0.28 8.47 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.44 1.99 9.11 45.56 0.42 2.40 16 33 H 0.42 0.75 9.11 45.56 0.42 1.16 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -37.52 300.38 -5.02 -42.54 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -1.78 Total: 11.15 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.80 Total: -9.36 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.33 Total: -48.53 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.82 Total: -42.85 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.17 Total: 16.98 kcal Atomic # 15 Polarization: 25.86 SS G_CDS: -0.32 Total: 25.55 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -37.52 -5.02 -42.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168586639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.790 kcal (2) G-P(sol) polarization free energy of solvation -37.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds