Wall clock time and date at job start Tue Mar 31 2020 03:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86796 * 119.99998 * 2 1 4 4 H 1.48501 * 109.47218 * 275.37257 * 3 2 1 5 5 H 1.48497 * 109.47383 * 35.37495 * 3 2 1 6 6 H 1.48504 * 109.47294 * 155.37506 * 3 2 1 7 7 C 1.39947 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00059 * 342.10008 * 7 2 1 9 9 C 1.41023 * 119.99681 * 162.09408 * 7 2 1 10 10 C 1.40998 * 120.70690 * 330.08365 * 9 7 2 11 11 C 1.38007 * 118.27957 * 179.97438 * 10 9 7 12 12 C 1.38683 * 119.62801 * 359.97438 * 11 10 9 13 13 N 1.31971 * 121.44993 * 0.02562 * 12 11 10 14 14 C 1.32266 * 121.85874 * 359.97438 * 13 12 11 15 15 N 1.38096 * 119.90341 * 180.02562 * 14 13 12 16 16 C 1.46504 * 119.99601 * 359.97438 * 15 14 13 17 17 C 1.53000 * 109.46776 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.47241 * 64.99998 * 17 16 15 19 19 P 1.61000 * 122.99832 * 179.97438 * 18 17 16 20 20 O 1.47999 * 109.47073 * 55.00116 * 19 18 17 21 21 O 1.60997 * 109.47310 * 174.99864 * 19 18 17 22 22 O 1.61005 * 109.47231 * 295.00043 * 19 18 17 23 23 H 0.97004 * 120.00108 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.86144 * 359.94858 * 10 9 7 25 25 H 1.08003 * 120.18578 * 179.97438 * 11 10 9 26 26 H 1.08000 * 119.27894 * 179.72300 * 12 11 10 27 27 H 0.97000 * 120.00386 * 179.97438 * 15 14 13 28 28 H 1.09001 * 109.47109 * 299.99914 * 16 15 14 29 29 H 1.08994 * 109.47389 * 60.00375 * 16 15 14 30 30 H 1.09006 * 109.47277 * 185.00000 * 17 16 15 31 31 H 1.08999 * 109.47316 * 304.99924 * 17 16 15 32 32 H 0.96699 * 114.00713 * 179.97438 * 21 19 18 33 33 H 0.96702 * 113.99955 * 299.99956 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3766 2.1120 -1.3939 5 1 1.5016 2.6172 0.8105 6 1 3.5924 1.4101 0.5834 7 6 2.0084 -1.2120 0.0005 8 1 1.5076 -2.1245 0.2884 9 6 3.3674 -1.2417 -0.3750 10 6 3.8782 -0.3121 -1.3039 11 6 5.2159 -0.3863 -1.6351 12 6 6.0133 -1.3602 -1.0530 13 7 5.5218 -2.2241 -0.1847 14 6 4.2489 -2.2057 0.1742 15 7 3.7776 -3.1288 1.0868 16 6 4.6870 -4.1268 1.6555 17 6 3.9180 -5.0206 2.6304 18 8 2.9340 -5.7700 1.9148 19 15 1.9395 -6.8166 2.6273 20 8 1.2108 -6.1378 3.7221 21 8 0.8850 -7.3759 1.5468 22 8 2.7921 -8.0425 3.2294 23 1 -0.4850 0.8401 -0.0004 24 1 3.2391 0.4384 -1.7452 25 1 5.6393 0.3102 -2.3437 26 1 7.0583 -1.4161 -1.3196 27 1 2.8444 -3.1164 1.3514 28 1 5.1031 -4.7375 0.8542 29 1 5.4951 -3.6221 2.1849 30 1 4.6110 -5.7050 3.1198 31 1 3.4276 -4.4014 3.3816 32 1 0.2534 -8.0134 1.9070 33 1 3.2963 -8.5340 2.5666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168586639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:09 Heat of formation + Delta-G solvation = -267.746698 kcal Electronic energy + Delta-G solvation = -20405.154653 eV Core-core repulsion = 16926.605110 eV Total energy + Delta-G solvation = -3478.549543 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.075 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53752 -38.71931 -37.64484 -36.91709 -36.09898 -35.75792 -34.20085 -33.05852 -31.87592 -29.25127 -27.02948 -24.60333 -22.94095 -22.48941 -20.78493 -19.86919 -19.36716 -18.71339 -18.47026 -17.47061 -16.95893 -16.60482 -16.42446 -15.92219 -15.56505 -15.45937 -15.16524 -14.90606 -14.66908 -14.11147 -13.94452 -13.83150 -13.78618 -13.68605 -13.37776 -13.17492 -12.61627 -12.40448 -12.08084 -11.89052 -11.76866 -11.66826 -11.59703 -11.30007 -10.79059 -10.08384 -9.92873 -8.85085 -8.46519 -6.29772 0.38913 0.75385 0.93889 1.26249 1.39250 1.48688 2.12987 2.67730 2.70923 2.87239 3.61566 3.79158 3.87434 4.04725 4.20787 4.30790 4.38489 4.66782 4.71408 4.78015 4.94426 5.08963 5.22548 5.24701 5.53786 5.59815 5.75644 5.98893 5.99836 6.22971 6.44686 6.72256 6.80105 6.85377 6.99413 7.77655 8.22903 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.019221 B = 0.004805 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.369794 B = 5825.968278 C = 6855.990550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.048 3.952 3 Si 0.964 3.036 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.468 4.468 8 H 0.061 0.939 9 C -0.017 4.017 10 C -0.204 4.204 11 C -0.184 4.184 12 C 0.019 3.981 13 N -0.537 5.537 14 C 0.317 3.683 15 N -0.725 5.725 16 C 0.137 3.863 17 C 0.103 3.897 18 O -0.757 6.757 19 P 2.358 2.642 20 O -1.085 7.085 21 O -0.870 6.870 22 O -0.854 6.854 23 H 0.292 0.708 24 H 0.104 0.896 25 H 0.135 0.865 26 H 0.164 0.836 27 H 0.404 0.596 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.455 0.545 33 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.023 -14.295 3.207 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.166 4.166 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.499 4.499 8 H 0.079 0.921 9 C -0.024 4.024 10 C -0.230 4.230 11 C -0.207 4.207 12 C -0.133 4.133 13 N -0.256 5.256 14 C 0.077 3.923 15 N -0.363 5.363 16 C 0.013 3.987 17 C 0.031 3.969 18 O -0.780 6.780 19 P 2.639 2.361 20 O -1.180 7.180 21 O -0.794 6.794 22 O -0.776 6.776 23 H 0.102 0.898 24 H 0.122 0.878 25 H 0.153 0.847 26 H 0.181 0.819 27 H 0.240 0.760 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.140 0.860 31 H 0.088 0.912 32 H 0.316 0.684 33 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges 8.573 -14.323 3.583 17.072 hybrid contribution -1.233 0.688 -0.682 1.568 sum 7.340 -13.635 2.902 15.754 Atomic orbital electron populations 1.69741 1.08965 1.31157 1.37958 1.26698 0.95261 1.03817 0.90857 0.85482 0.79244 0.77101 0.79279 1.18384 1.20715 1.18448 1.19042 0.93669 0.95464 1.41768 0.92057 1.18257 0.93787 0.95235 0.95126 1.21242 0.96834 1.03339 1.01556 1.21644 0.93955 1.01685 1.03395 1.22191 0.99900 0.93856 0.97373 1.66776 1.12646 1.27786 1.18366 1.18681 0.88842 0.92409 0.92332 1.43986 1.12200 1.33402 1.46727 1.21360 0.91963 0.88989 0.96392 1.22802 0.87842 0.93876 0.92373 1.87856 1.59712 1.66822 1.63570 0.87583 0.50927 0.50306 0.47296 1.95168 1.78746 1.79870 1.64238 1.87631 1.58167 1.69567 1.64045 1.88127 1.72725 1.62014 1.54746 0.89811 0.87799 0.84673 0.81888 0.76010 0.91685 0.89803 0.86020 0.91182 0.68355 0.69425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.51 13.93 21.83 0.30 -47.21 16 2 C 0.05 2.59 5.42 85.25 0.46 3.05 16 3 Si 0.96 43.94 24.53 68.60 1.68 45.62 16 4 H -0.26 -11.08 6.71 99.48 0.67 -10.41 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.26 -12.26 6.85 99.48 0.68 -11.58 16 7 C -0.47 -26.24 8.94 23.37 0.21 -26.03 16 8 H 0.06 3.66 7.03 -2.91 -0.02 3.64 16 9 C -0.02 -0.86 5.12 -21.06 -0.11 -0.96 16 10 C -0.20 -9.79 7.27 22.89 0.17 -9.62 16 11 C -0.18 -7.58 10.08 22.32 0.22 -7.36 16 12 C 0.02 0.76 11.17 84.78 0.95 1.71 16 13 N -0.54 -23.45 9.54 -191.45 -1.83 -25.28 16 14 C 0.32 15.07 7.52 134.05 1.01 16.08 16 15 N -0.73 -30.26 5.56 -343.64 -1.91 -32.17 16 16 C 0.14 4.16 6.06 86.38 0.52 4.69 16 17 C 0.10 2.49 6.58 71.98 0.47 2.97 16 18 O -0.76 -19.46 10.14 -14.54 -0.15 -19.60 16 19 P 2.36 50.86 7.35 -40.88 -0.30 50.56 16 20 O -1.08 -38.60 18.58 -8.16 -0.15 -38.75 16 21 O -0.87 -15.86 14.06 -14.54 -0.20 -16.06 16 22 O -0.85 -10.37 14.06 -14.54 -0.20 -10.58 16 23 H 0.29 14.72 8.30 -92.70 -0.77 13.95 16 24 H 0.10 4.96 4.82 -2.91 -0.01 4.95 16 25 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 26 H 0.16 5.13 8.06 -2.91 -0.02 5.10 16 27 H 0.40 17.95 6.76 -92.71 -0.63 17.32 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.46 3.71 9.11 -74.06 -0.67 3.04 16 33 H 0.45 0.17 9.11 -74.06 -0.67 -0.51 16 Total: -1.00 -82.83 300.38 0.30 -82.53 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.85 Total: 26.43 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 3.91 Total: -15.48 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -3.43 Total: -104.65 kcal Atomic # 8 Polarization: -84.29 SS G_CDS: -0.71 Total: -85.00 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.68 Total: 45.62 kcal Atomic # 15 Polarization: 50.86 SS G_CDS: -0.30 Total: 50.56 kcal Total: -82.83 0.30 -82.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168586639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.219 kcal (2) G-P(sol) polarization free energy of solvation -82.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds