Wall clock time and date at job start Tue Mar 31 2020 03:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30593 * 1 3 3 Si 1.86798 * 119.99904 * 2 1 4 4 H 1.48504 * 109.46807 * 239.99966 * 3 2 1 5 5 H 1.48497 * 109.46987 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47180 * 119.99900 * 3 2 1 7 7 C 1.40348 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99988 * 187.96334 * 7 2 1 9 9 C 1.40172 * 120.00476 * 7.95701 * 7 2 1 10 10 C 1.39065 * 119.74707 * 215.91293 * 9 7 2 11 11 C 1.42030 * 118.74580 * 179.72817 * 10 9 7 12 12 N 1.32201 * 120.83571 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00429 * 176.77672 * 12 11 10 14 14 C 1.53003 * 109.47288 * 113.90726 * 13 12 11 15 15 O 1.42902 * 109.46850 * 65.00541 * 14 13 12 16 16 P 1.60996 * 122.99639 * 180.02562 * 15 14 13 17 17 O 1.48003 * 109.47256 * 304.99636 * 16 15 14 18 18 O 1.60999 * 109.47378 * 64.99802 * 16 15 14 19 19 O 1.61000 * 109.47037 * 184.99679 * 16 15 14 20 20 C 1.46919 * 118.33031 * 359.97438 * 11 10 9 21 21 C 1.34372 * 119.37191 * 0.02562 * 20 11 10 22 22 N 1.36428 * 121.22107 * 359.97438 * 21 20 11 23 23 H 0.96998 * 119.09221 * 180.02562 * 22 21 20 24 24 H 0.97002 * 119.99701 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.62729 * 359.70502 * 10 9 7 26 26 H 1.09000 * 109.47540 * 233.91289 * 13 12 11 27 27 H 1.09007 * 109.46748 * 353.90464 * 13 12 11 28 28 H 1.08997 * 109.46917 * 184.99911 * 14 13 12 29 29 H 1.08996 * 109.47168 * 305.00448 * 14 13 12 30 30 H 0.96699 * 114.00490 * 59.99762 * 18 16 15 31 31 H 0.96702 * 114.00225 * 179.97438 * 19 16 15 32 32 H 1.07999 * 120.31368 * 180.02562 * 20 11 10 33 33 H 1.07997 * 119.39298 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0936 1.6963 -1.2126 5 1 1.2749 2.7464 -0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0076 -1.2155 -0.0005 8 1 3.0798 -1.2201 0.1290 9 6 1.3169 -2.4235 -0.1691 10 6 1.7348 -3.5588 0.5167 11 6 1.0159 -4.7701 0.3347 12 7 1.3774 -5.8741 0.9657 13 6 0.5816 -7.0954 0.8199 14 6 1.4052 -8.1563 0.0870 15 8 2.5257 -8.5292 0.8916 16 15 3.6101 -9.6261 0.4303 17 8 2.9195 -10.8904 0.0912 18 8 4.4043 -9.0853 -0.8616 19 8 4.6517 -9.8885 1.6296 20 6 -0.1396 -4.7655 -0.5727 21 6 -0.4808 -3.6269 -1.1994 22 7 0.2255 -2.4754 -1.0084 23 1 -0.0483 -1.6711 -1.4763 24 1 -0.4850 0.8401 -0.0004 25 1 2.5900 -3.5202 1.1751 26 1 0.3038 -7.4681 1.8058 27 1 -0.3196 -6.8755 0.2475 28 1 0.7846 -9.0326 -0.1002 29 1 1.7577 -7.7514 -0.8616 30 1 4.8816 -8.2577 -0.7120 31 1 5.3350 -10.5403 1.4216 32 1 -0.7094 -5.6686 -0.7344 33 1 -1.3304 -3.6230 -1.8662 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168592839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:12 Heat of formation + Delta-G solvation = -234.661755 kcal Electronic energy + Delta-G solvation = -19882.299554 eV Core-core repulsion = 16405.184682 eV Total energy + Delta-G solvation = -3477.114872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.075 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -38.66099 -37.23517 -36.64565 -35.98102 -34.79870 -33.57578 -32.94514 -30.77684 -30.16886 -27.46922 -25.92144 -22.65752 -21.57994 -20.15901 -19.65412 -18.88626 -18.07973 -17.32741 -16.67890 -15.84151 -15.58617 -15.37201 -14.98647 -14.80025 -14.45169 -13.90299 -13.68664 -13.22843 -13.02234 -12.90801 -12.80606 -12.50701 -12.04911 -11.56659 -11.48355 -11.34957 -11.13779 -11.08931 -10.77641 -10.53469 -10.37617 -10.36140 -10.12670 -9.69341 -9.48204 -8.22542 -7.62051 -7.23280 -6.02765 -4.87618 1.48651 2.59505 2.64444 2.87628 2.90076 3.09623 3.65671 3.84793 4.19475 4.57007 4.79446 5.15088 5.36636 5.40998 5.50903 5.69910 5.88449 5.97784 6.25126 6.44193 6.56846 6.62144 6.70085 6.74618 6.81185 6.97233 7.31348 7.61752 7.68968 7.83269 7.88220 8.12461 8.29210 8.70081 8.80769 9.60814 9.78255 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.003278 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.081519 B = 8539.099695 C = 9111.622823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.078 3.922 3 Si 0.925 3.075 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.481 4.481 8 H 0.100 0.900 9 C 0.338 3.662 10 C -0.345 4.345 11 C 0.277 3.723 12 N -0.659 5.659 13 C 0.052 3.948 14 C 0.131 3.869 15 O -0.725 6.725 16 P 2.307 2.693 17 O -1.025 7.025 18 O -0.863 6.863 19 O -0.862 6.862 20 C -0.308 4.308 21 C 0.130 3.870 22 N -0.598 5.598 23 H 0.411 0.589 24 H 0.290 0.710 25 H 0.115 0.885 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.426 0.574 31 H 0.435 0.565 32 H 0.118 0.882 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.189 -5.397 -3.754 7.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.140 4.140 3 Si 0.749 3.251 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.515 4.515 8 H 0.118 0.882 9 C 0.230 3.770 10 C -0.373 4.373 11 C 0.114 3.886 12 N -0.386 5.386 13 C -0.079 4.079 14 C 0.058 3.942 15 O -0.750 6.750 16 P 2.590 2.410 17 O -1.125 7.125 18 O -0.779 6.779 19 O -0.780 6.780 20 C -0.338 4.338 21 C 0.000 4.000 22 N -0.205 5.205 23 H 0.248 0.752 24 H 0.102 0.898 25 H 0.133 0.867 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.281 0.719 31 H 0.291 0.709 32 H 0.136 0.864 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.044 -5.715 -2.961 7.602 hybrid contribution -0.029 1.319 -0.681 1.485 sum 4.014 -4.396 -3.642 6.979 Atomic orbital electron populations 1.69417 1.07608 1.30745 1.37228 1.26080 0.95004 1.01951 0.90951 0.86062 0.79842 0.78849 0.80370 1.18610 1.20209 1.18497 1.19373 0.96582 0.88852 1.46657 0.88194 1.17660 0.81380 0.94089 0.83911 1.20364 1.11044 0.90835 1.15093 1.20402 0.88154 0.92986 0.87074 1.73524 1.32127 0.98052 1.34856 1.21973 0.94016 0.93043 0.98870 1.22534 0.83219 0.97548 0.90887 1.87856 1.47555 1.75532 1.64067 0.89257 0.51883 0.53510 0.46345 1.95180 1.78292 1.51944 1.87053 1.88085 1.75609 1.49654 1.64541 1.87656 1.55968 1.68432 1.65962 1.22289 1.05500 0.97443 1.08578 1.21271 0.94578 0.86964 0.97200 1.42094 1.27675 1.10556 1.40199 0.75151 0.89845 0.86727 0.91997 0.93359 0.92145 0.93092 0.71917 0.70859 0.86394 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -17.92 11.48 55.57 0.64 -17.28 16 2 C 0.08 1.67 5.25 -17.28 -0.09 1.57 16 3 Si 0.92 16.26 29.57 -169.99 -5.03 11.23 16 4 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 5 H -0.28 -4.79 7.11 56.52 0.40 -4.39 16 6 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 7 C -0.48 -11.06 9.01 -38.06 -0.34 -11.40 16 8 H 0.10 2.22 7.86 -52.49 -0.41 1.81 16 9 C 0.34 7.93 6.21 -84.16 -0.52 7.41 16 10 C -0.34 -8.44 9.83 -37.82 -0.37 -8.82 16 11 C 0.28 6.50 6.80 -82.74 -0.56 5.94 16 12 N -0.66 -15.39 10.56 -57.24 -0.60 -15.99 16 13 C 0.05 1.02 6.62 -4.04 -0.03 1.00 16 14 C 0.13 2.27 6.79 37.16 0.25 2.52 16 15 O -0.73 -12.36 10.14 -15.13 -0.15 -12.51 16 16 P 2.31 31.45 7.35 -42.89 -0.32 31.13 16 17 O -1.03 -18.96 18.58 -12.94 -0.24 -19.20 16 18 O -0.86 -9.55 14.06 -15.13 -0.21 -9.77 16 19 O -0.86 -9.31 14.06 -15.13 -0.21 -9.53 16 20 C -0.31 -6.20 9.37 -37.43 -0.35 -6.55 16 21 C 0.13 2.40 11.15 -16.87 -0.19 2.21 16 22 N -0.60 -12.36 4.80 -10.83 -0.05 -12.41 16 23 H 0.41 8.09 7.03 -40.82 -0.29 7.80 16 24 H 0.29 5.80 8.29 -40.82 -0.34 5.46 16 25 H 0.11 2.88 8.06 -52.49 -0.42 2.45 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 0.88 5.26 -51.93 -0.27 0.61 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.43 2.85 9.11 45.56 0.42 3.26 16 31 H 0.43 2.39 9.11 45.56 0.42 2.81 16 32 H 0.12 2.10 5.92 -52.49 -0.31 1.79 16 33 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 306.09 15.07 4.61 4.61 Total: -1.00 -34.00 306.09 -5.47 -39.48 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -1.70 Total: 16.36 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -2.20 Total: -6.12 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -0.02 Total: -45.69 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -0.82 Total: -51.01 kcal Atomic # 14 Polarization: 16.26 SS G_CDS: -5.03 Total: 11.23 kcal Atomic # 15 Polarization: 31.45 SS G_CDS: -0.32 Total: 31.13 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.00 -5.47 -39.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168592839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.186 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds