Wall clock time and date at job start Tue Mar 31 2020 03:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36109 * 116.99677 * 2 1 4 4 C 1.38918 * 120.40643 * 0.02562 * 3 2 1 5 5 C 1.38553 * 118.51629 * 180.02562 * 4 3 2 6 6 C 1.38900 * 119.26383 * 0.02562 * 5 4 3 7 7 N 1.39254 * 119.62602 * 179.97438 * 6 5 4 8 8 S 1.65599 * 120.00481 * 180.02562 * 7 6 5 9 9 O 1.42099 * 106.40306 * 178.54388 * 8 7 6 10 10 O 1.42102 * 106.39886 * 311.46462 * 8 7 6 11 11 C 1.76200 * 107.21752 * 64.99945 * 8 7 6 12 12 H 1.08003 * 119.99830 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99872 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00053 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99735 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47326 * 59.99708 * 15 13 11 17 17 H 1.48501 * 109.46947 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46920 * 299.99485 * 15 13 11 19 19 N 1.32464 * 120.75827 * 359.97438 * 6 5 4 20 20 C 1.32299 * 121.60394 * 0.02562 * 19 6 5 21 21 O 1.35765 * 119.66377 * 179.97438 * 20 19 6 22 22 C 1.42899 * 117.00224 * 359.97438 * 21 20 19 23 23 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47231 * 299.99589 * 1 2 3 25 25 H 1.09006 * 109.47389 * 60.00390 * 1 2 3 26 26 H 1.07994 * 120.74340 * 0.02562 * 4 3 2 27 27 H 1.08004 * 120.36413 * 180.02562 * 5 4 3 28 28 H 0.97004 * 119.99271 * 0.02721 * 7 6 5 29 29 H 0.96996 * 119.99464 * 180.02562 * 14 13 11 30 30 H 1.09004 * 109.47042 * 60.00134 * 22 21 20 31 31 H 1.08995 * 109.47273 * 180.02562 * 22 21 20 32 32 H 1.09003 * 109.47183 * 300.00389 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2128 0.0000 4 6 1.2984 2.3831 0.0005 5 6 1.9678 3.5963 0.0000 6 6 3.3567 3.6054 -0.0016 7 7 4.0371 4.8204 -0.0028 8 16 5.6930 4.8422 -0.0053 9 8 6.0762 6.2101 -0.0406 10 8 6.1076 3.9450 1.0156 11 6 6.2215 4.1378 -1.5315 12 1 5.4913 3.7935 -2.2489 13 6 7.5672 4.0261 -1.8098 14 7 8.4564 4.4450 -0.9359 15 14 8.1275 3.2800 -3.4281 16 1 7.5936 4.0853 -4.5557 17 1 9.6115 3.2736 -3.4827 18 1 7.6229 1.8871 -3.5319 19 7 4.0417 2.4716 -0.0021 20 6 3.4357 1.2955 -0.0016 21 8 4.1766 0.1579 -0.0027 22 6 5.5976 0.3091 -0.0049 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.2191 2.3482 0.0014 27 1 1.4156 4.5245 0.0008 28 1 3.5410 5.6540 -0.0020 29 1 9.4031 4.3667 -1.1320 30 1 5.9059 0.8585 0.8846 31 1 6.0676 -0.6743 -0.0060 32 1 5.9031 0.8585 -0.8954 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192934822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:05 Heat of formation + Delta-G solvation = -147.746341 kcal Electronic energy + Delta-G solvation = -21533.148264 eV Core-core repulsion = 18006.560350 eV Total energy + Delta-G solvation = -3526.587914 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.92948 -39.38883 -39.08737 -37.40288 -36.16613 -35.53449 -35.07597 -32.96193 -30.50899 -28.25920 -27.98893 -27.72566 -24.27796 -23.70004 -21.07714 -19.99159 -19.65203 -18.93134 -18.45104 -17.67874 -17.40818 -17.30187 -16.79122 -16.13063 -16.03023 -15.74803 -15.61347 -14.85967 -14.77743 -14.38103 -14.08059 -13.99257 -13.35278 -13.05072 -12.90582 -12.77024 -12.75203 -12.51892 -12.38602 -12.33821 -12.22028 -12.11629 -11.36785 -11.22899 -10.86551 -10.73318 -10.55974 -8.78274 -8.57619 -7.42073 0.16652 0.22732 0.29668 1.30860 1.33114 1.45580 2.00553 2.18644 2.38492 2.59583 2.61565 2.73067 3.43073 3.64671 3.84921 4.02937 4.04736 4.38035 4.48617 4.49673 4.51126 4.54407 4.64101 4.84283 4.87482 5.02519 5.10384 5.18970 5.29878 5.89647 5.99241 6.03059 6.48367 6.79958 6.93740 8.22897 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019816 B = 0.006707 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.673113 B = 4173.993819 C = 4916.821936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.022 3.978 4 C -0.086 4.086 5 C -0.190 4.190 6 C 0.365 3.635 7 N -1.035 6.035 8 S 2.713 3.287 9 O -1.035 7.035 10 O -1.013 7.013 11 C -1.009 5.009 12 H 0.106 0.894 13 C 0.078 3.922 14 N -0.892 5.892 15 Si 0.981 3.019 16 H -0.252 1.252 17 H -0.260 1.260 18 H -0.255 1.255 19 N -0.559 5.559 20 C 0.306 3.694 21 O -0.307 6.307 22 C 0.042 3.958 23 H 0.116 0.884 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.199 0.801 27 H 0.184 0.816 28 H 0.439 0.561 29 H 0.298 0.702 30 H 0.043 0.957 31 H 0.127 0.873 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.218 -6.835 -1.255 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C -0.027 4.027 4 C -0.112 4.112 5 C -0.215 4.215 6 C 0.134 3.866 7 N -0.783 5.783 8 S 2.815 3.185 9 O -1.026 7.026 10 O -1.003 7.003 11 C -1.144 5.144 12 H 0.124 0.876 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.800 3.200 16 H -0.176 1.176 17 H -0.184 1.184 18 H -0.179 1.179 19 N -0.289 5.289 20 C 0.125 3.875 21 O -0.214 6.214 22 C -0.053 4.053 23 H 0.134 0.866 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.215 0.785 27 H 0.201 0.799 28 H 0.277 0.723 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.145 0.855 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.459 -6.967 -0.435 16.962 hybrid contribution -0.149 0.314 -0.993 1.053 sum -15.609 -6.653 -1.428 17.028 Atomic orbital electron populations 1.23435 0.76095 1.05762 1.02710 1.86178 1.23557 1.24590 1.89585 1.18770 0.88573 0.87550 1.07830 1.21736 1.02282 0.88666 0.98517 1.21652 0.90348 1.01400 1.08102 1.17852 0.90014 0.83589 0.95147 1.53527 1.28110 1.10890 1.85805 1.00275 0.69764 0.72220 0.76270 1.93350 1.80584 1.38810 1.89807 1.93328 1.79397 1.66516 1.61013 1.30447 1.00778 1.57340 1.25816 0.87558 1.25815 0.94962 0.90752 1.01961 1.69966 1.04523 1.40646 1.37203 0.85302 0.78179 0.79724 0.76843 1.17586 1.18420 1.17910 1.66691 1.41328 0.97992 1.22908 1.19021 0.87405 0.84293 0.96745 1.86227 1.20703 1.26338 1.88171 1.22905 0.76781 1.03686 1.01917 0.86554 0.91057 0.91044 0.78452 0.79893 0.72344 0.89157 0.93838 0.85459 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.83 113.37 1.11 1.30 16 2 O -0.33 -8.62 10.29 -80.80 -0.83 -9.45 16 3 C 0.02 0.66 6.72 22.65 0.15 0.81 16 4 C -0.09 -1.92 9.13 22.51 0.21 -1.71 16 5 C -0.19 -4.91 9.93 22.50 0.22 -4.68 16 6 C 0.37 14.00 7.33 132.90 0.97 14.98 16 7 N -1.03 -41.93 5.85 -55.38 -0.32 -42.26 16 8 S 2.71 149.06 4.66 -56.49 -0.26 148.80 16 9 O -1.04 -61.74 18.02 -128.00 -2.31 -64.05 16 10 O -1.01 -61.87 16.89 -128.00 -2.16 -64.04 16 11 C -1.01 -56.81 9.33 67.73 0.63 -56.18 16 12 H 0.11 5.63 7.81 -2.91 -0.02 5.61 16 13 C 0.08 4.39 5.46 84.65 0.46 4.85 16 14 N -0.89 -53.34 13.19 21.45 0.28 -53.06 16 15 Si 0.98 42.29 29.54 68.60 2.03 44.32 16 16 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 17 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 18 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 19 N -0.56 -24.83 7.18 -305.84 -2.20 -27.03 16 20 C 0.31 12.14 7.50 84.84 0.64 12.77 16 21 O -0.31 -12.20 10.26 -76.93 -0.79 -12.99 16 22 C 0.04 1.65 10.38 113.37 1.18 2.83 16 23 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 0.70 7.69 -2.39 -0.02 0.68 16 25 H 0.07 0.70 7.70 -2.38 -0.02 0.68 16 26 H 0.20 2.24 6.43 -2.91 -0.02 2.22 16 27 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.44 13.63 8.82 -96.74 -0.85 12.78 16 29 H 0.30 16.08 8.31 -92.71 -0.77 15.31 16 30 H 0.04 1.91 8.10 -2.38 -0.02 1.89 16 31 H 0.13 3.79 8.14 -2.39 -0.02 3.77 16 32 H 0.04 1.91 8.10 -2.39 -0.02 1.90 16 Total: -1.00 -84.31 300.12 -0.67 -84.97 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.32 Total: 19.82 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 5.58 Total: -25.03 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -2.24 Total: -122.34 kcal Atomic # 8 Polarization: -144.44 SS G_CDS: -6.09 Total: -150.53 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 149.06 SS G_CDS: -0.26 Total: 148.80 kcal Total: -84.31 -0.67 -84.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192934822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.773 kcal (2) G-P(sol) polarization free energy of solvation -84.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds