Wall clock time and date at job start Tue Mar 31 2020 03:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 119.99834 * 2 1 4 4 C 1.38384 * 120.00343 * 179.97438 * 2 1 3 5 5 N 1.32476 * 119.14583 * 0.02562 * 4 2 1 6 6 C 1.32942 * 120.83595 * 179.97438 * 5 4 2 7 7 O 1.35537 * 120.41917 * 180.02562 * 6 5 4 8 8 C 1.38940 * 119.15870 * 359.97438 * 6 5 4 9 9 C 1.39256 * 118.44463 * 359.97438 * 8 6 5 10 10 N 1.38590 * 120.45410 * 180.02562 * 9 8 6 11 11 S 1.65606 * 120.00274 * 180.02562 * 10 9 8 12 12 O 1.42105 * 106.40008 * 311.45704 * 11 10 9 13 13 O 1.42098 * 106.40370 * 178.53890 * 11 10 9 14 14 C 1.76193 * 107.21910 * 64.99860 * 11 10 9 15 15 H 1.08002 * 120.00351 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00314 * 180.02562 * 14 11 10 17 17 N 1.31523 * 119.99660 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00522 * 179.97438 * 16 14 11 19 19 H 1.48507 * 109.46652 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47242 * 119.99675 * 18 16 14 21 21 H 1.48499 * 109.47269 * 239.99877 * 18 16 14 22 22 N 1.32428 * 119.15076 * 180.27656 * 4 2 1 23 23 H 1.09000 * 109.47370 * 270.00195 * 1 2 3 24 24 H 1.08999 * 109.47440 * 30.00420 * 1 2 3 25 25 H 1.09004 * 109.46778 * 150.00149 * 1 2 3 26 26 H 1.09006 * 109.47109 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47128 * 299.99273 * 3 2 1 28 28 H 1.08997 * 109.47343 * 59.99944 * 3 2 1 29 29 H 0.96694 * 114.00405 * 269.98145 * 7 6 5 30 30 H 1.07998 * 120.77805 * 180.02562 * 8 6 5 31 31 H 0.97002 * 120.00115 * 0.02562 * 10 9 8 32 32 H 0.96997 * 119.99726 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1569 -1.1984 0.0005 5 7 1.4776 -2.3357 0.0005 6 6 2.1081 -3.5061 0.0005 7 8 1.4046 -4.6646 0.0000 8 6 3.4974 -3.5266 0.0000 9 6 4.1787 -2.3121 -0.0011 10 7 5.5643 -2.2839 -0.0022 11 16 6.3631 -0.8332 -0.0028 12 8 5.7652 -0.0464 -1.0240 13 8 7.7503 -1.1390 0.0308 14 6 5.9928 -0.0333 1.5228 15 1 5.3464 -0.5144 2.2419 16 6 6.5282 1.2070 1.7986 17 7 7.3158 1.7928 0.9231 18 14 6.1351 2.0555 3.4157 19 1 5.2324 1.1934 4.2203 20 1 7.3930 2.2942 4.1681 21 1 5.4669 3.3535 3.1440 22 7 3.4811 -1.1787 0.0061 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 3.2691 1.0696 0.0005 27 1 1.9342 1.8403 -0.8900 28 1 1.9341 1.8403 0.8899 29 1 1.2004 -5.0012 0.8832 30 1 4.0363 -4.4625 -0.0004 31 1 6.0663 -3.1139 -0.0026 32 1 7.6927 2.6651 1.1174 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192938154.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:45 Heat of formation + Delta-G solvation = -85.786355 kcal Electronic energy + Delta-G solvation = -21540.516877 eV Core-core repulsion = 18048.908500 eV Total energy + Delta-G solvation = -3491.608377 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.09120 -38.86257 -38.09458 -37.40609 -36.19343 -35.87609 -35.13880 -33.13193 -31.13405 -28.91540 -28.24682 -26.80421 -24.55657 -23.09545 -21.24864 -20.18440 -19.87433 -18.60861 -18.44861 -17.61529 -17.16929 -16.84371 -16.65859 -16.32835 -15.99553 -15.75784 -15.55239 -15.29602 -14.79914 -14.00864 -13.42129 -13.31616 -13.22625 -13.09307 -13.03157 -12.97291 -12.84278 -12.68151 -12.52028 -12.38401 -12.30480 -11.61307 -11.23505 -11.15940 -10.94965 -10.27229 -10.12802 -8.86072 -8.73078 -7.41363 0.09358 0.14752 0.24756 1.32683 1.33503 1.50578 1.60028 2.18791 2.45208 2.59070 2.63172 2.87142 3.51681 3.60932 3.75579 4.19807 4.28456 4.38733 4.47073 4.52862 4.58564 4.81641 4.84268 4.95831 5.11719 5.23492 5.30227 5.66760 5.90004 5.91478 6.15008 6.40896 6.67164 6.81136 7.32015 8.24319 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.007435 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.416473 B = 3764.897933 C = 4678.988559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.590 5.590 3 C 0.089 3.911 4 C 0.602 3.398 5 N -0.616 5.616 6 C 0.421 3.579 7 O -0.472 6.472 8 C -0.331 4.331 9 C 0.466 3.534 10 N -1.024 6.024 11 S 2.708 3.292 12 O -1.006 7.006 13 O -1.031 7.031 14 C -1.004 5.004 15 H 0.107 0.893 16 C 0.079 3.921 17 N -0.891 5.891 18 Si 0.985 3.015 19 H -0.256 1.256 20 H -0.259 1.259 21 H -0.255 1.255 22 N -0.621 5.621 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.430 0.570 30 H 0.181 0.819 31 H 0.441 0.559 32 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.155 -7.170 3.007 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.307 5.307 3 C -0.054 4.054 4 C 0.244 3.756 5 N -0.354 5.354 6 C 0.234 3.766 7 O -0.282 6.282 8 C -0.363 4.363 9 C 0.222 3.778 10 N -0.770 5.770 11 S 2.810 3.190 12 O -0.995 6.995 13 O -1.021 7.021 14 C -1.138 5.138 15 H 0.125 0.875 16 C -0.134 4.134 17 N -0.523 5.523 18 Si 0.804 3.196 19 H -0.180 1.180 20 H -0.183 1.183 21 H -0.179 1.179 22 N -0.354 5.354 23 H 0.080 0.920 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.293 0.707 30 H 0.198 0.802 31 H 0.279 0.721 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.052 -5.586 1.608 14.288 hybrid contribution 0.666 -0.682 1.421 1.712 sum -12.386 -6.268 3.029 14.208 Atomic orbital electron populations 1.21775 0.75456 1.03982 1.02521 1.46184 1.06977 1.01381 1.76166 1.21818 0.98469 0.83055 1.02015 1.18629 0.83197 0.86621 0.87125 1.67370 1.41606 0.97639 1.28773 1.18720 0.86368 0.84801 0.86760 1.84653 1.75018 1.32338 1.36225 1.22094 0.94850 0.98802 1.20580 1.17831 0.84252 0.89516 0.86158 1.53671 1.10919 1.28672 1.83752 1.00545 0.70948 0.70945 0.76551 1.93343 1.77803 1.67394 1.60964 1.93364 1.34454 1.84466 1.89832 1.30405 1.42699 1.15323 1.25416 0.87466 1.25812 0.89878 0.95742 1.01940 1.69977 1.27655 1.17583 1.37112 0.85178 0.79517 0.78523 0.76392 1.17979 1.18350 1.17912 1.67370 1.08601 1.30313 1.29095 0.92037 0.88918 0.90652 0.91089 0.90905 0.90774 0.70685 0.80178 0.72075 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.37 10.48 127.77 1.34 3.71 16 2 N -0.59 -19.38 3.37 -761.14 -2.57 -21.95 16 3 C 0.09 3.00 10.71 127.77 1.37 4.37 16 4 C 0.60 22.86 8.18 261.54 2.14 24.99 16 5 N -0.62 -20.38 9.13 -311.04 -2.84 -23.22 16 6 C 0.42 12.08 7.82 84.69 0.66 12.74 16 7 O -0.47 -9.63 13.57 -88.42 -1.20 -10.83 16 8 C -0.33 -9.83 9.97 22.68 0.23 -9.61 16 9 C 0.47 18.22 7.34 133.03 0.98 19.20 16 10 N -1.02 -41.26 5.84 -55.24 -0.32 -41.59 16 11 S 2.71 145.28 4.66 -56.49 -0.26 145.02 16 12 O -1.01 -59.79 16.92 -128.00 -2.17 -61.95 16 13 O -1.03 -60.25 18.02 -128.00 -2.31 -62.55 16 14 C -1.00 -54.84 9.35 67.74 0.63 -54.20 16 15 H 0.11 5.53 7.81 -2.91 -0.02 5.51 16 16 C 0.08 4.33 5.46 84.65 0.46 4.79 16 17 N -0.89 -51.91 13.19 21.45 0.28 -51.63 16 18 Si 0.99 40.97 29.54 68.60 2.03 43.00 16 19 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 22 N -0.62 -27.05 6.91 -195.76 -1.35 -28.40 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.09 1.60 8.07 -2.39 -0.02 1.58 16 25 H 0.07 1.77 7.33 -2.38 -0.02 1.75 16 26 H 0.07 3.13 6.76 -2.38 -0.02 3.11 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.43 3.84 9.06 -74.06 -0.67 3.17 16 30 H 0.18 3.89 8.06 -2.91 -0.02 3.87 16 31 H 0.44 13.77 8.84 -96.74 -0.86 12.92 16 32 H 0.30 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -80.93 300.45 -3.23 -84.17 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.33 Total: 23.95 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 7.81 Total: 5.99 kcal Atomic # 7 Polarization: -159.98 SS G_CDS: -6.80 Total: -166.78 kcal Atomic # 8 Polarization: -129.66 SS G_CDS: -5.67 Total: -135.33 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: 145.28 SS G_CDS: -0.26 Total: 145.02 kcal Total: -80.93 -3.23 -84.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938154.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.621 kcal (2) G-P(sol) polarization free energy of solvation -80.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds