Wall clock time and date at job start Tue Mar 31 2020 04:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.33126 * 117.26657 * 2 1 4 4 O 1.21279 * 118.57374 * 0.12028 * 3 2 1 5 5 C 1.50311 * 122.85236 * 179.83920 * 3 2 1 6 6 C 1.52987 * 109.18151 * 21.48413 * 5 3 2 7 7 C 1.52319 * 109.48534 * 308.11971 * 6 5 3 8 8 H 1.08998 * 109.81625 * 185.32306 * 7 6 5 9 9 C 1.45412 * 117.27123 * 179.97438 * 2 1 3 10 10 H 1.09007 * 112.01613 * 64.15254 * 9 2 1 11 11 C 1.55417 * 108.17022 * 300.83053 * 9 2 1 12 12 C 1.54341 * 103.00564 * 277.26126 * 11 9 2 13 13 N 1.46909 * 110.84108 * 306.85448 * 7 6 5 14 14 S 1.65600 * 125.73569 * 323.03757 * 13 7 6 15 15 O 1.42101 * 106.39637 * 17.31690 * 14 13 7 16 16 O 1.42095 * 106.40025 * 150.23487 * 14 13 7 17 17 C 1.76195 * 107.22121 * 263.77968 * 14 13 7 18 18 H 1.08001 * 120.00087 * 4.88654 * 17 14 13 19 19 C 1.37872 * 120.00264 * 184.89726 * 17 14 13 20 20 N 1.31517 * 119.99932 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00201 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47384 * 59.99614 * 21 19 17 23 23 H 1.48509 * 109.47053 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46956 * 299.99214 * 21 19 17 25 25 H 1.08997 * 109.47451 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46915 * 119.99888 * 1 2 3 27 27 H 1.09005 * 109.47028 * 239.99410 * 1 2 3 28 28 H 1.08998 * 109.51853 * 141.39159 * 5 3 2 29 29 H 1.08993 * 109.51995 * 261.51752 * 5 3 2 30 30 H 1.08997 * 109.46636 * 68.12629 * 6 5 3 31 31 H 1.08996 * 109.46503 * 188.11951 * 6 5 3 32 32 H 1.08999 * 110.70981 * 158.88473 * 11 9 2 33 33 H 1.09005 * 110.86024 * 35.70379 * 11 9 2 34 34 H 1.08996 * 109.89091 * 218.44721 * 12 11 9 35 35 H 1.09004 * 110.02795 * 97.32938 * 12 11 9 36 36 H 0.96998 * 120.00255 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.0748 1.1833 0.0000 4 8 1.3939 2.1869 0.0022 5 6 3.5708 1.3296 0.0035 6 6 4.2033 0.0397 -0.5224 7 6 3.6444 -1.1504 0.2465 8 1 4.1591 -2.0617 -0.0579 9 6 2.1312 -1.2925 0.0006 10 1 1.9269 -1.8580 -0.9086 11 6 1.6806 -2.0695 1.2689 12 6 2.6087 -1.5092 2.3675 13 7 3.7936 -0.9538 1.6947 14 16 5.0797 -0.2288 2.4449 15 8 5.7701 0.5019 1.4405 16 8 4.5689 0.3691 3.6284 17 6 6.1703 -1.5109 2.9658 18 1 5.9639 -2.5369 2.6991 19 6 7.2870 -1.2044 3.7140 20 7 7.5385 0.0451 4.0385 21 14 8.4429 -2.5637 4.2668 22 1 8.9895 -3.2633 3.0765 23 1 9.5588 -1.9761 5.0509 24 1 7.6995 -3.5321 5.1122 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 -0.3633 -0.5140 0.8900 28 1 3.8567 2.1633 -0.6379 29 1 3.9160 1.5172 1.0202 30 1 3.9733 -0.0718 -1.5820 31 1 5.2840 0.0840 -0.3879 32 1 1.8377 -3.1405 1.1410 33 1 0.6368 -1.8595 1.5023 34 1 2.9079 -2.3097 3.0440 35 1 2.0964 -0.7249 2.9248 36 1 8.3244 0.2608 4.5646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192958894.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:31 Heat of formation + Delta-G solvation = -105.812283 kcal Electronic energy + Delta-G solvation = -22873.099929 eV Core-core repulsion = 19484.163506 eV Total energy + Delta-G solvation = -3388.936423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.78917 -37.93705 -35.57828 -34.58204 -34.11961 -33.20989 -33.02050 -29.72198 -28.19593 -26.82626 -26.17855 -23.59407 -21.94896 -21.27384 -19.09663 -18.09685 -17.22424 -16.75208 -16.52437 -16.12791 -15.70644 -15.04659 -14.66630 -14.15972 -14.03506 -13.66668 -13.48875 -13.30726 -12.96622 -12.58598 -12.37546 -12.13264 -12.01348 -11.68425 -11.48058 -11.27433 -11.24983 -11.03390 -10.82441 -10.71163 -10.63719 -10.34951 -10.29945 -9.95480 -9.29488 -9.21601 -8.99131 -8.60948 -8.26721 -6.75492 -5.39011 2.12067 2.89911 3.03991 3.09008 3.13842 3.16436 3.99651 4.26078 4.48511 4.61069 4.79615 4.86983 5.02739 5.23860 5.30356 5.37581 5.44148 5.44783 5.59529 5.66902 5.74781 5.81658 5.96378 6.02443 6.06418 6.13234 6.23430 6.25955 6.38866 6.48783 6.70778 6.92513 7.27106 7.38113 7.62368 7.90435 8.38712 8.82557 10.17924 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.029860 B = 0.006400 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.475145 B = 4373.855632 C = 4701.863568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.596 5.596 3 C 0.523 3.477 4 O -0.563 6.563 5 C -0.124 4.124 6 C -0.151 4.151 7 C 0.150 3.850 8 H 0.088 0.912 9 C 0.135 3.865 10 H 0.099 0.901 11 C -0.145 4.145 12 C 0.126 3.874 13 N -1.016 6.016 14 S 2.724 3.276 15 O -0.994 6.994 16 O -0.997 6.997 17 C -1.022 5.022 18 H 0.102 0.898 19 C 0.133 3.867 20 N -0.844 5.844 21 Si 0.920 3.080 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.264 1.264 25 H 0.090 0.910 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 -7.015 -8.185 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.328 5.328 3 C 0.312 3.688 4 O -0.442 6.442 5 C -0.164 4.164 6 C -0.189 4.189 7 C 0.042 3.958 8 H 0.106 0.894 9 C 0.029 3.971 10 H 0.117 0.883 11 C -0.184 4.184 12 C 0.000 4.000 13 N -0.852 5.852 14 S 2.827 3.173 15 O -0.985 6.985 16 O -0.987 6.987 17 C -1.155 5.155 18 H 0.120 0.880 19 C -0.086 4.086 20 N -0.474 5.474 21 Si 0.744 3.256 22 H -0.188 1.188 23 H -0.200 1.200 24 H -0.189 1.189 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.402 -5.357 -7.924 13.412 hybrid contribution 0.790 -1.492 0.538 1.772 sum -8.611 -6.849 -7.385 13.252 Atomic orbital electron populations 1.21774 0.80470 1.04564 1.01000 1.46913 1.07146 1.05694 1.73084 1.20402 0.91555 0.82332 0.74463 1.90645 1.66172 1.36035 1.51369 1.21604 0.89572 1.00240 1.04994 1.22139 1.05759 0.92344 0.98702 1.21250 0.93193 0.99213 0.82116 0.89419 1.22059 0.93039 0.83591 0.98361 0.88322 1.23194 1.00233 1.00171 0.94803 1.21500 0.85990 0.97838 0.94692 1.59183 1.35109 1.78027 1.12840 1.00281 0.70979 0.74235 0.71810 1.93315 1.72774 1.71952 1.60461 1.93373 1.80355 1.76985 1.48018 1.30560 1.24015 1.12407 1.48536 0.88016 1.24756 0.96227 0.96585 0.91004 1.69884 1.27402 1.18141 1.31944 0.86200 0.79101 0.80965 0.79317 1.18788 1.20039 1.18862 0.89104 0.92470 0.92134 0.88045 0.88693 0.90986 0.85538 0.89616 0.89831 0.91464 0.91983 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 10.04 59.84 0.60 1.35 16 2 N -0.60 -8.54 2.89 -173.33 -0.50 -9.05 16 3 C 0.52 9.42 7.47 -11.91 -0.09 9.33 16 4 O -0.56 -11.64 15.91 5.56 0.09 -11.55 16 5 C -0.12 -2.29 5.31 -28.08 -0.15 -2.44 16 6 C -0.15 -2.44 4.93 -27.09 -0.13 -2.57 16 7 C 0.15 2.28 3.37 -67.56 -0.23 2.05 16 8 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 9 C 0.14 1.63 3.67 -66.73 -0.24 1.39 16 10 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 11 C -0.14 -1.62 6.41 -24.75 -0.16 -1.78 16 12 C 0.13 2.03 7.03 -2.99 -0.02 2.01 16 13 N -1.02 -19.48 3.09 -105.61 -0.33 -19.81 16 14 S 2.72 69.56 4.14 -107.50 -0.44 69.12 16 15 O -0.99 -26.17 12.70 -57.17 -0.73 -26.90 16 16 O -1.00 -29.11 17.59 -57.17 -1.01 -30.11 16 17 C -1.02 -27.26 9.74 30.60 0.30 -26.96 16 18 H 0.10 2.47 7.81 -52.49 -0.41 2.06 16 19 C 0.13 3.62 5.46 -17.82 -0.10 3.52 16 20 N -0.84 -24.38 13.10 55.43 0.73 -23.65 16 21 Si 0.92 20.07 29.54 -169.99 -5.02 15.05 16 22 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 25 H 0.09 1.22 6.54 -51.93 -0.34 0.88 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.60 6.31 -51.93 -0.33 0.28 16 28 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.10 2.07 5.47 -51.93 -0.28 1.79 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.13 2.34 5.82 -51.93 -0.30 2.04 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.81 5.95 -51.93 -0.31 0.50 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.29 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 295.06 15.07 4.45 4.45 Total: -1.00 -35.24 295.06 -7.48 -42.71 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.49 Total: 3.86 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -0.22 Total: -14.11 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.10 Total: -52.51 kcal Atomic # 8 Polarization: -66.92 SS G_CDS: -1.64 Total: -68.56 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 69.56 SS G_CDS: -0.44 Total: 69.12 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.24 -7.48 -42.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192958894.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.102 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds