Wall clock time and date at job start Tue Mar 31 2020 03:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99645 * 2 1 4 4 H 1.48500 * 109.47195 * 269.99661 * 3 2 1 5 5 H 1.48506 * 109.47119 * 29.99847 * 3 2 1 6 6 H 1.48501 * 109.47274 * 149.99922 * 3 2 1 7 7 C 1.37881 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99777 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99802 * 180.02562 * 7 2 1 10 10 O 1.42093 * 106.40608 * 66.46059 * 9 7 2 11 11 O 1.42100 * 106.39802 * 293.53787 * 9 7 2 12 12 N 1.65603 * 107.21368 * 180.02562 * 9 7 2 13 13 C 1.46919 * 120.59545 * 89.99726 * 12 9 7 14 14 C 1.53258 * 108.74716 * 125.97862 * 13 12 9 15 15 C 1.52677 * 109.36368 * 54.01213 * 14 13 12 16 16 C 1.54164 * 109.73878 * 178.47844 * 15 14 13 17 17 C 1.54875 * 101.60398 * 215.47103 * 16 15 14 18 18 C 1.51317 * 104.11945 * 24.87731 * 17 16 15 19 19 O 1.21283 * 124.95269 * 163.66961 * 18 17 16 20 20 N 1.34532 * 110.09977 * 343.40145 * 18 17 16 21 21 C 1.52673 * 110.50411 * 299.62820 * 15 14 13 22 22 C 1.46926 * 120.59304 * 269.97734 * 12 9 7 23 23 H 0.96996 * 120.00069 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.59534 * 6.19864 * 13 12 9 25 25 H 1.09003 * 109.71492 * 245.82731 * 13 12 9 26 26 H 1.09003 * 109.48592 * 294.05385 * 14 13 12 27 27 H 1.08996 * 109.51218 * 173.99178 * 14 13 12 28 28 H 1.09000 * 110.99050 * 333.80024 * 16 15 14 29 29 H 1.09002 * 110.98372 * 97.60164 * 16 15 14 30 30 H 1.08990 * 110.63856 * 266.16904 * 17 16 15 31 31 H 1.09004 * 110.41633 * 143.46900 * 17 16 15 32 32 H 0.96995 * 124.40559 * 180.02562 * 20 18 17 33 33 H 1.09003 * 109.48407 * 180.34600 * 21 15 14 34 34 H 1.08994 * 109.48939 * 300.40796 * 21 15 14 35 35 H 1.08993 * 109.59174 * 353.79994 * 22 12 9 36 36 H 1.08999 * 109.58980 * 114.10091 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5467 1.4404 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 16 3.7667 -1.1938 0.0012 10 8 4.1675 -0.6491 1.2509 11 8 4.1683 -0.6497 -1.2485 12 7 4.2569 -2.7756 0.0011 13 6 4.4788 -3.4896 -1.2637 14 6 5.8920 -4.0824 -1.2534 15 6 6.0749 -4.9332 0.0011 16 6 7.4812 -5.5649 0.0013 17 6 7.2035 -6.9434 0.6503 18 6 5.7403 -7.1993 0.3614 19 8 5.1935 -8.2785 0.4474 20 7 5.1331 -6.0543 0.0008 21 6 5.8916 -4.0826 1.2556 22 6 4.4783 -3.4900 1.2657 23 1 -0.4850 0.8400 -0.0004 24 1 4.3799 -2.7950 -2.0978 25 1 3.7471 -4.2910 -1.3667 26 1 6.6248 -3.2755 -1.2554 27 1 6.0327 -4.7037 -2.1378 28 1 7.8594 -5.6763 -1.0149 29 1 8.1711 -4.9815 0.6111 30 1 7.3788 -6.9042 1.7253 31 1 7.8234 -7.7125 0.1895 32 1 4.1939 -5.9811 -0.2300 33 1 6.0316 -4.7042 2.1400 34 1 6.6243 -3.2757 1.2582 35 1 4.3791 -2.7956 2.0999 36 1 3.7449 -4.2900 1.3668 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192973499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:53 Heat of formation + Delta-G solvation = -116.176968 kcal Electronic energy + Delta-G solvation = -22082.646685 eV Core-core repulsion = 18693.260816 eV Total energy + Delta-G solvation = -3389.385869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99929 -38.03447 -35.79940 -35.50440 -34.51140 -33.06712 -31.51308 -31.08776 -30.62088 -26.43687 -25.37972 -23.38976 -22.21534 -20.98613 -19.79815 -18.82195 -17.73126 -16.95984 -16.68342 -16.05094 -15.34646 -15.31786 -14.80707 -14.32696 -14.17511 -13.93823 -13.70818 -13.54815 -13.35864 -13.09864 -12.85696 -12.70255 -12.25343 -11.84385 -11.66100 -11.48876 -11.37260 -11.23117 -10.92076 -10.86795 -10.64763 -10.44527 -10.33687 -9.92638 -9.85350 -9.25631 -9.21431 -9.12936 -8.38349 -6.84600 -5.38946 1.91242 2.54158 3.03017 3.13091 3.21595 3.30295 3.90308 4.03140 4.16099 4.27379 4.49261 4.54358 4.79170 4.82054 5.07609 5.17045 5.26756 5.36432 5.40797 5.42694 5.50701 5.62205 5.70116 5.73524 5.81327 5.89250 5.98265 6.08362 6.15952 6.24086 6.51864 6.78888 7.01764 7.25092 7.44056 8.17131 8.20884 8.66178 10.27873 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.035860 B = 0.005059 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.627107 B = 5533.352996 C = 5774.856167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.152 3.848 3 Si 0.801 3.199 4 H -0.246 1.246 5 H -0.254 1.254 6 H -0.220 1.220 7 C -1.017 5.017 8 H 0.120 0.880 9 S 2.676 3.324 10 O -1.005 7.005 11 O -1.008 7.008 12 N -1.001 6.001 13 C 0.120 3.880 14 C -0.134 4.134 15 C 0.160 3.840 16 C -0.124 4.124 17 C -0.156 4.156 18 C 0.519 3.481 19 O -0.543 6.543 20 N -0.715 5.715 21 C -0.136 4.136 22 C 0.122 3.878 23 H 0.281 0.719 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.412 0.588 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.704 -8.869 -0.040 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.067 4.067 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.178 1.178 6 H -0.142 1.142 7 C -1.151 5.151 8 H 0.138 0.862 9 S 2.779 3.221 10 O -0.996 6.996 11 O -0.998 6.998 12 N -0.837 5.837 13 C -0.006 4.006 14 C -0.173 4.173 15 C 0.073 3.927 16 C -0.162 4.162 17 C -0.196 4.196 18 C 0.305 3.695 19 O -0.420 6.420 20 N -0.370 5.370 21 C -0.176 4.176 22 C -0.004 4.004 23 H 0.091 0.909 24 H 0.118 0.882 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.252 0.748 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.945 -8.630 0.041 16.399 hybrid contribution -1.003 0.527 -0.098 1.138 sum 12.941 -8.104 -0.057 15.269 Atomic orbital electron populations 1.69989 1.06607 1.29079 1.39469 1.24449 0.94792 0.98826 0.88662 0.87873 0.83585 0.84576 0.81853 1.16992 1.17842 1.14192 1.30536 1.15718 1.02126 1.66748 0.86158 1.01414 0.77217 0.70226 0.73200 1.93449 1.85350 1.75573 1.45200 1.93393 1.85334 1.75742 1.45376 1.57712 1.84358 1.31624 1.09991 1.21280 0.95066 0.97324 0.86912 1.22192 0.99128 0.99552 0.96458 1.20722 0.88730 0.86709 0.96511 1.22743 0.95813 0.95194 1.02457 1.22397 0.94682 0.99015 1.03505 1.20921 0.89796 0.83424 0.75360 1.90750 1.71740 1.26065 1.53479 1.46373 1.12917 1.08654 1.69103 1.22266 0.99079 0.99456 0.96816 1.21261 0.95204 0.97239 0.86678 0.90865 0.88183 0.92225 0.89720 0.90262 0.89674 0.88972 0.87849 0.88297 0.74850 0.90579 0.89917 0.88355 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.54 13.96 55.43 0.77 -22.76 16 2 C 0.15 4.31 5.47 -17.82 -0.10 4.21 16 3 Si 0.80 20.18 26.54 -169.99 -4.51 15.67 16 4 H -0.25 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.25 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.22 -5.60 5.61 56.52 0.32 -5.28 16 7 C -1.02 -27.73 10.29 30.60 0.31 -27.42 16 8 H 0.12 3.34 8.06 -52.49 -0.42 2.91 16 9 S 2.68 63.58 4.22 -107.50 -0.45 63.13 16 10 O -1.01 -25.55 14.61 -57.17 -0.84 -26.39 16 11 O -1.01 -25.44 15.42 -57.17 -0.88 -26.32 16 12 N -1.00 -17.73 3.28 -113.45 -0.37 -18.10 16 13 C 0.12 1.76 6.23 -3.68 -0.02 1.73 16 14 C -0.13 -1.46 4.98 -26.76 -0.13 -1.59 16 15 C 0.16 1.62 0.71 -131.59 -0.09 1.52 16 16 C -0.12 -0.91 6.18 -25.13 -0.16 -1.07 16 17 C -0.16 -1.28 6.87 -26.59 -0.18 -1.46 16 18 C 0.52 6.35 8.44 -10.79 -0.09 6.26 16 19 O -0.54 -8.97 18.03 5.55 0.10 -8.87 16 20 N -0.71 -8.00 4.90 -47.24 -0.23 -8.23 16 21 C -0.14 -1.53 4.96 -26.77 -0.13 -1.66 16 22 C 0.12 1.83 6.27 -3.68 -0.02 1.81 16 23 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.10 1.58 6.91 -51.93 -0.36 1.22 16 25 H 0.06 0.78 7.13 -51.93 -0.37 0.41 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.08 0.54 7.88 -51.93 -0.41 0.13 16 29 H 0.09 0.54 7.86 -51.93 -0.41 0.13 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.41 4.76 7.72 -40.82 -0.32 4.45 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 1.60 6.92 -51.93 -0.36 1.24 16 36 H 0.06 0.86 7.81 -51.93 -0.41 0.45 16 LS Contribution 298.62 15.07 4.50 4.50 Total: -1.00 -34.07 298.62 -7.33 -41.40 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.81 Total: 3.63 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -0.62 Total: -17.66 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.17 Total: -49.10 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: -1.62 Total: -61.58 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.51 Total: 15.67 kcal Atomic # 16 Polarization: 63.58 SS G_CDS: -0.45 Total: 63.13 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.07 -7.33 -41.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.776 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds