Wall clock time and date at job start Tue Mar 31 2020 03:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99645 * 2 1 4 4 H 1.48500 * 109.47195 * 269.99661 * 3 2 1 5 5 H 1.48506 * 109.47119 * 29.99847 * 3 2 1 6 6 H 1.48501 * 109.47274 * 149.99922 * 3 2 1 7 7 C 1.37881 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99777 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99802 * 180.02562 * 7 2 1 10 10 O 1.42093 * 106.40608 * 66.46059 * 9 7 2 11 11 O 1.42100 * 106.39802 * 293.53787 * 9 7 2 12 12 N 1.65603 * 107.21368 * 180.02562 * 9 7 2 13 13 C 1.46919 * 120.59545 * 89.99726 * 12 9 7 14 14 C 1.53258 * 108.74716 * 125.97862 * 13 12 9 15 15 C 1.52677 * 109.36368 * 54.01213 * 14 13 12 16 16 C 1.54164 * 109.73878 * 178.47844 * 15 14 13 17 17 C 1.54875 * 101.60398 * 215.47103 * 16 15 14 18 18 C 1.51317 * 104.11945 * 24.87731 * 17 16 15 19 19 O 1.21283 * 124.95269 * 163.66961 * 18 17 16 20 20 N 1.34532 * 110.09977 * 343.40145 * 18 17 16 21 21 C 1.52673 * 110.50411 * 299.62820 * 15 14 13 22 22 C 1.46926 * 120.59304 * 269.97734 * 12 9 7 23 23 H 0.96996 * 120.00069 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.59534 * 6.19864 * 13 12 9 25 25 H 1.09003 * 109.71492 * 245.82731 * 13 12 9 26 26 H 1.09003 * 109.48592 * 294.05385 * 14 13 12 27 27 H 1.08996 * 109.51218 * 173.99178 * 14 13 12 28 28 H 1.09000 * 110.99050 * 333.80024 * 16 15 14 29 29 H 1.09002 * 110.98372 * 97.60164 * 16 15 14 30 30 H 1.08990 * 110.63856 * 266.16904 * 17 16 15 31 31 H 1.09004 * 110.41633 * 143.46900 * 17 16 15 32 32 H 0.96995 * 124.40559 * 180.02562 * 20 18 17 33 33 H 1.09003 * 109.48407 * 180.34600 * 21 15 14 34 34 H 1.08994 * 109.48939 * 300.40796 * 21 15 14 35 35 H 1.08993 * 109.59174 * 353.79994 * 22 12 9 36 36 H 1.08999 * 109.58980 * 114.10091 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5467 1.4404 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 16 3.7667 -1.1938 0.0012 10 8 4.1675 -0.6491 1.2509 11 8 4.1683 -0.6497 -1.2485 12 7 4.2569 -2.7756 0.0011 13 6 4.4788 -3.4896 -1.2637 14 6 5.8920 -4.0824 -1.2534 15 6 6.0749 -4.9332 0.0011 16 6 7.4812 -5.5649 0.0013 17 6 7.2035 -6.9434 0.6503 18 6 5.7403 -7.1993 0.3614 19 8 5.1935 -8.2785 0.4474 20 7 5.1331 -6.0543 0.0008 21 6 5.8916 -4.0826 1.2556 22 6 4.4783 -3.4900 1.2657 23 1 -0.4850 0.8400 -0.0004 24 1 4.3799 -2.7950 -2.0978 25 1 3.7471 -4.2910 -1.3667 26 1 6.6248 -3.2755 -1.2554 27 1 6.0327 -4.7037 -2.1378 28 1 7.8594 -5.6763 -1.0149 29 1 8.1711 -4.9815 0.6111 30 1 7.3788 -6.9042 1.7253 31 1 7.8234 -7.7125 0.1895 32 1 4.1939 -5.9811 -0.2300 33 1 6.0316 -4.7042 2.1400 34 1 6.6243 -3.2757 1.2582 35 1 4.3791 -2.7956 2.0999 36 1 3.7449 -4.2900 1.3668 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192973499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:53 Heat of formation + Delta-G solvation = -144.186101 kcal Electronic energy + Delta-G solvation = -22083.861252 eV Core-core repulsion = 18693.260816 eV Total energy + Delta-G solvation = -3390.600436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.87132 -39.11086 -37.75705 -36.64132 -36.47748 -35.19605 -32.29776 -32.12821 -31.62505 -28.56168 -26.32951 -24.45404 -23.17930 -21.81954 -21.02552 -20.45406 -19.28284 -18.78480 -17.81099 -17.25263 -16.94445 -16.74985 -15.81740 -15.66126 -15.44592 -15.19891 -15.07320 -14.93847 -14.78059 -14.53881 -14.11042 -13.50786 -13.36052 -13.31613 -13.25690 -12.87887 -12.69980 -12.62175 -12.59558 -12.18914 -12.13027 -11.83903 -11.60763 -11.36137 -11.30131 -11.18231 -10.87883 -10.07420 -9.80046 -8.98469 -7.54615 0.09515 1.03496 1.12725 1.19390 1.63982 1.87013 2.39501 2.42121 2.46059 3.32447 3.43483 3.54850 3.70697 3.88387 3.98928 4.06265 4.25782 4.28223 4.38957 4.47247 4.52517 4.72173 4.81662 4.84422 4.92055 4.99146 5.13181 5.14100 5.22259 5.26861 5.28915 5.38930 5.86677 5.91681 5.98832 6.14314 6.52252 7.29249 8.19652 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.035860 B = 0.005059 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.627107 B = 5533.352996 C = 5774.856167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.105 3.895 3 Si 0.827 3.173 4 H -0.238 1.238 5 H -0.221 1.221 6 H -0.225 1.225 7 C -1.044 5.044 8 H 0.099 0.901 9 S 2.700 3.300 10 O -1.023 7.023 11 O -1.024 7.024 12 N -0.995 5.995 13 C 0.107 3.893 14 C -0.127 4.127 15 C 0.158 3.842 16 C -0.112 4.112 17 C -0.147 4.147 18 C 0.510 3.490 19 O -0.595 6.595 20 N -0.714 5.714 21 C -0.131 4.131 22 C 0.111 3.889 23 H 0.291 0.709 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.405 0.595 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.562 -9.185 -0.026 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.111 4.111 3 Si 0.643 3.357 4 H -0.161 1.161 5 H -0.144 1.144 6 H -0.147 1.147 7 C -1.176 5.176 8 H 0.117 0.883 9 S 2.801 3.199 10 O -1.013 7.013 11 O -1.014 7.014 12 N -0.834 5.834 13 C -0.018 4.018 14 C -0.166 4.166 15 C 0.072 3.928 16 C -0.149 4.149 17 C -0.186 4.186 18 C 0.299 3.701 19 O -0.477 6.477 20 N -0.367 5.367 21 C -0.171 4.171 22 C -0.014 4.014 23 H 0.101 0.899 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.111 0.889 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.244 0.756 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.777 -8.905 0.053 18.994 hybrid contribution -1.946 0.520 -0.112 2.017 sum 14.831 -8.386 -0.059 17.038 Atomic orbital electron populations 1.70029 1.07658 1.30481 1.40628 1.25251 0.95639 1.01689 0.88562 0.87469 0.82960 0.82551 0.82703 1.16089 1.14351 1.14723 1.31205 1.18848 1.01309 1.66198 0.88280 1.00522 0.75280 0.71835 0.72301 1.93414 1.84837 1.77237 1.45841 1.93360 1.84801 1.77336 1.45902 1.57327 1.83650 1.30120 1.12340 1.21598 0.98351 0.97056 0.84787 1.22195 0.96267 1.00108 0.98073 1.20837 0.90416 0.86182 0.95375 1.22788 0.93895 0.94229 1.04030 1.22438 0.91407 0.99983 1.04802 1.21671 0.91548 0.82617 0.74271 1.90722 1.73216 1.27993 1.55756 1.46516 1.12919 1.09001 1.68312 1.22285 0.96184 1.00098 0.98522 1.21533 0.98395 0.96779 0.84708 0.89902 0.89713 0.91151 0.88883 0.87806 0.87993 0.86511 0.86209 0.86829 0.75614 0.88339 0.88922 0.90020 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.07 13.96 21.45 0.30 -49.77 16 2 C 0.10 6.03 5.47 84.66 0.46 6.49 16 3 Si 0.83 40.68 26.54 68.60 1.82 42.51 16 4 H -0.24 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.22 -9.64 7.11 99.48 0.71 -8.93 16 6 H -0.22 -11.22 5.61 99.48 0.56 -10.67 16 7 C -1.04 -58.53 10.29 67.74 0.70 -57.83 16 8 H 0.10 5.77 8.06 -2.91 -0.02 5.74 16 9 S 2.70 128.58 4.22 -56.49 -0.24 128.34 16 10 O -1.02 -51.85 14.61 -128.00 -1.87 -53.72 16 11 O -1.02 -51.43 15.42 -128.00 -1.97 -53.40 16 12 N -1.00 -34.65 3.28 -512.86 -1.68 -36.34 16 13 C 0.11 3.00 6.23 86.39 0.54 3.54 16 14 C -0.13 -2.37 4.98 30.57 0.15 -2.22 16 15 C 0.16 2.64 0.71 3.80 0.00 2.65 16 16 C -0.11 -1.07 6.18 31.63 0.20 -0.87 16 17 C -0.15 -1.80 6.87 30.68 0.21 -1.59 16 18 C 0.51 11.45 8.44 87.89 0.74 12.19 16 19 O -0.60 -19.36 18.03 -3.04 -0.05 -19.42 16 20 N -0.71 -14.48 4.90 -421.90 -2.07 -16.54 16 21 C -0.13 -2.53 4.96 30.57 0.15 -2.38 16 22 C 0.11 3.21 6.27 86.38 0.54 3.75 16 23 H 0.29 15.26 8.31 -92.71 -0.77 14.49 16 24 H 0.08 2.64 6.91 -2.39 -0.02 2.62 16 25 H 0.07 1.79 7.13 -2.39 -0.02 1.78 16 26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.10 1.49 8.13 -2.39 -0.02 1.47 16 28 H 0.10 0.72 7.88 -2.39 -0.02 0.70 16 29 H 0.12 0.65 7.86 -2.39 -0.02 0.63 16 30 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.41 8.98 7.72 -92.71 -0.72 8.26 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 2.63 6.92 -2.39 -0.02 2.62 16 36 H 0.07 1.83 7.81 -2.39 -0.02 1.81 16 Total: -1.00 -75.85 298.62 -1.83 -77.68 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.24 Total: 16.94 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 3.69 Total: -36.28 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -3.45 Total: -102.65 kcal Atomic # 8 Polarization: -122.64 SS G_CDS: -3.90 Total: -126.54 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.82 Total: 42.51 kcal Atomic # 16 Polarization: 128.58 SS G_CDS: -0.24 Total: 128.34 kcal Total: -75.85 -1.83 -77.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.504 kcal (2) G-P(sol) polarization free energy of solvation -75.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds