Wall clock time and date at job start Tue Mar 31 2020 03:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 S 1.76198 * 119.99742 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40257 * 293.53753 * 9 7 2 11 11 O 1.42096 * 106.40041 * 66.46100 * 9 7 2 12 12 N 1.65602 * 107.21304 * 179.97438 * 9 7 2 13 13 C 1.44907 * 117.36722 * 269.73672 * 12 9 7 14 14 C 1.51555 * 111.25131 * 258.56493 * 13 12 9 15 15 C 1.48658 * 111.33432 * 296.07984 * 14 13 12 16 16 O 1.21281 * 114.10624 * 218.72248 * 15 14 13 17 17 N 1.32327 * 131.78575 * 38.74331 * 15 14 13 18 18 C 1.47907 * 122.92652 * 193.55616 * 17 15 14 19 19 C 1.54016 * 106.91214 * 197.28046 * 18 17 15 20 20 C 1.54594 * 102.51689 * 330.14242 * 19 18 17 21 21 C 1.47232 * 128.22048 * 18.42672 * 17 15 14 22 22 H 1.09002 * 110.78427 * 63.34256 * 21 17 15 23 23 C 1.43774 * 117.36378 * 90.00429 * 12 9 7 24 24 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.17636 * 18.89962 * 13 12 9 26 26 H 1.08999 * 109.17574 * 138.13295 * 13 12 9 27 27 H 1.09003 * 109.17620 * 175.55861 * 14 13 12 28 28 H 1.09001 * 109.03623 * 56.51269 * 14 13 12 29 29 H 1.09006 * 109.97200 * 316.64413 * 18 17 15 30 30 H 1.09000 * 109.97405 * 77.91426 * 18 17 15 31 31 H 1.08996 * 110.80140 * 88.40343 * 19 18 17 32 32 H 1.09001 * 110.79771 * 211.69524 * 19 18 17 33 33 H 1.08997 * 110.70686 * 275.82289 * 20 19 18 34 34 H 1.08999 * 110.70847 * 152.57602 * 20 19 18 35 35 H 1.09000 * 108.98707 * 226.70243 * 23 12 9 36 36 H 1.09001 * 108.99209 * 345.52610 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 16 1.1235 -2.7200 0.0005 10 8 0.4510 -2.7950 1.2500 11 8 0.4519 -2.7955 -1.2494 12 7 2.2484 -3.9354 0.0005 13 6 2.6965 -4.4283 -1.2863 14 6 2.0197 -5.7376 -1.6391 15 6 2.3886 -6.8125 -0.6808 16 8 2.5529 -7.8989 -1.1942 17 7 2.5703 -6.8011 0.6299 18 6 3.2160 -7.9124 1.3618 19 6 2.8536 -7.7400 2.8487 20 6 2.6970 -6.2077 2.9800 21 6 2.1107 -5.7977 1.6045 22 1 1.0218 -5.7575 1.6340 23 6 2.6972 -4.4204 1.2774 24 1 -0.4850 0.8401 0.0004 25 1 2.4629 -3.6902 -2.0535 26 1 3.7751 -4.5819 -1.2550 27 1 2.3198 -6.0366 -2.6434 28 1 0.9391 -5.5962 -1.6180 29 1 2.8401 -8.8677 0.9953 30 1 4.2974 -7.8637 1.2341 31 1 1.9163 -8.2461 3.0799 32 1 3.6570 -8.1061 3.4879 33 1 3.6650 -5.7339 3.1429 34 1 2.0044 -5.9584 3.7839 35 1 3.7848 -4.4912 1.2675 36 1 2.3949 -3.7147 2.0512 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192973897.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:13 Heat of formation + Delta-G solvation = -114.182968 kcal Electronic energy + Delta-G solvation = -22350.792595 eV Core-core repulsion = 18961.493192 eV Total energy + Delta-G solvation = -3389.299403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.50438 -37.55323 -36.29207 -35.43060 -34.05710 -33.13922 -31.75331 -31.12451 -29.54519 -26.19631 -24.94922 -24.06053 -21.75887 -21.24616 -18.88374 -18.70033 -17.77493 -16.76507 -16.52552 -16.22355 -15.66063 -15.07231 -14.82706 -14.41861 -14.04640 -13.69937 -13.33377 -13.30547 -13.08088 -12.62458 -12.20941 -12.11559 -12.03076 -11.59002 -11.47200 -11.33660 -11.28782 -11.15440 -11.11484 -10.80357 -10.63904 -10.39141 -10.20193 -10.13614 -9.51397 -9.32467 -9.06053 -8.70756 -8.23672 -6.77131 -5.40185 2.14561 2.82820 3.00842 3.09117 3.09876 3.16390 3.98163 4.27275 4.46175 4.56974 4.59987 4.80623 4.97210 5.16847 5.26690 5.35325 5.38673 5.47458 5.55600 5.67334 5.72266 5.74940 5.83021 5.85733 5.91202 6.01747 6.03791 6.16828 6.20212 6.39588 6.46196 6.62486 7.25183 7.52651 7.81000 7.89932 8.32713 8.82010 10.16527 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.027425 B = 0.005765 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.709442 B = 4855.786582 C = 5296.512636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.271 1.271 7 C -1.020 5.020 8 H 0.103 0.897 9 S 2.701 3.299 10 O -1.002 7.002 11 O -1.001 7.001 12 N -1.003 6.003 13 C 0.128 3.872 14 C -0.142 4.142 15 C 0.530 3.470 16 O -0.580 6.580 17 N -0.600 5.600 18 C 0.107 3.893 19 C -0.132 4.132 20 C -0.126 4.126 21 C 0.107 3.893 22 H 0.089 0.911 23 C 0.116 3.884 24 H 0.291 0.709 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 -9.040 4.663 12.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.153 5.153 8 H 0.122 0.878 9 S 2.802 3.198 10 O -0.992 6.992 11 O -0.991 6.991 12 N -0.836 5.836 13 C 0.001 3.999 14 C -0.184 4.184 15 C 0.320 3.680 16 O -0.461 6.461 17 N -0.333 5.333 18 C -0.015 4.015 19 C -0.170 4.170 20 C -0.164 4.164 21 C 0.001 3.999 22 H 0.107 0.893 23 C -0.012 4.012 24 H 0.101 0.899 25 H 0.121 0.879 26 H 0.086 0.914 27 H 0.132 0.868 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.425 -9.663 4.285 12.370 hybrid contribution 0.892 1.258 0.022 1.542 sum 7.317 -8.405 4.306 11.947 Atomic orbital electron populations 1.69899 1.06787 1.30742 1.39967 1.24761 0.94469 1.00865 0.88454 0.86131 0.80451 0.80359 0.78647 1.18589 1.19551 1.19563 1.30589 1.06153 1.11599 1.66970 0.87844 1.01033 0.72474 0.73325 0.72980 1.93357 1.72658 1.87574 1.45585 1.93363 1.72733 1.87527 1.45480 1.56748 1.63699 1.54402 1.08711 1.20489 0.98696 0.95098 0.85572 1.21633 1.04378 0.94188 0.98160 1.19641 0.76516 0.90583 0.81227 1.90664 1.52044 1.28972 1.74429 1.47824 1.58222 1.21908 1.05350 1.22014 0.97291 0.91185 0.90974 1.22496 1.02607 0.96648 0.95295 1.22736 1.02328 0.95466 0.95919 1.22589 0.99697 0.89344 0.88230 0.89309 1.21158 0.99317 0.94662 0.86047 0.89859 0.87857 0.91416 0.86840 0.88076 0.90629 0.91667 0.90663 0.89773 0.89941 0.89313 0.91436 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.01 13.19 55.43 0.73 -23.28 16 2 C 0.13 3.56 5.46 -17.82 -0.10 3.46 16 3 Si 0.92 19.82 29.54 -169.99 -5.02 14.80 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -1.02 -26.68 9.75 30.60 0.30 -26.38 16 8 H 0.10 2.48 7.81 -52.48 -0.41 2.07 16 9 S 2.70 67.30 4.71 -107.50 -0.51 66.80 16 10 O -1.00 -27.07 16.49 -57.17 -0.94 -28.02 16 11 O -1.00 -27.44 16.58 -57.17 -0.95 -28.39 16 12 N -1.00 -18.93 2.89 -118.23 -0.34 -19.27 16 13 C 0.13 2.13 5.61 -5.63 -0.03 2.10 16 14 C -0.14 -2.30 5.86 -29.58 -0.17 -2.48 16 15 C 0.53 9.11 7.26 -13.04 -0.09 9.01 16 16 O -0.58 -11.34 16.20 5.56 0.09 -11.25 16 17 N -0.60 -9.06 3.06 -164.00 -0.50 -9.56 16 18 C 0.11 1.31 6.57 -2.74 -0.02 1.29 16 19 C -0.13 -1.21 6.99 -25.36 -0.18 -1.39 16 20 C -0.13 -1.30 6.36 -24.82 -0.16 -1.46 16 21 C 0.11 1.54 3.79 -66.34 -0.25 1.29 16 22 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 23 C 0.12 1.85 4.86 -5.37 -0.03 1.82 16 24 H 0.29 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.10 1.77 7.09 -51.93 -0.37 1.40 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.11 1.61 8.02 -51.93 -0.42 1.19 16 28 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 29 H 0.08 0.99 7.65 -51.93 -0.40 0.59 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.75 7.66 -51.93 -0.40 0.35 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.92 7.99 -51.93 -0.41 0.51 16 36 H 0.11 1.76 6.90 -51.93 -0.36 1.40 16 LS Contribution 304.91 15.07 4.60 4.60 Total: -1.00 -34.82 304.91 -8.43 -43.25 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.86 Total: 3.06 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.73 Total: -12.74 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.11 Total: -52.11 kcal Atomic # 8 Polarization: -65.86 SS G_CDS: -1.80 Total: -67.66 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 67.30 SS G_CDS: -0.51 Total: 66.80 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.82 -8.43 -43.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973897.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.931 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds