Wall clock time and date at job start Tue Mar 31 2020 03:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 S 1.76198 * 119.99742 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40257 * 293.53753 * 9 7 2 11 11 O 1.42096 * 106.40041 * 66.46100 * 9 7 2 12 12 N 1.65602 * 107.21304 * 179.97438 * 9 7 2 13 13 C 1.44907 * 117.36722 * 269.73672 * 12 9 7 14 14 C 1.51555 * 111.25131 * 258.56493 * 13 12 9 15 15 C 1.48658 * 111.33432 * 296.07984 * 14 13 12 16 16 O 1.21281 * 114.10624 * 218.72248 * 15 14 13 17 17 N 1.32327 * 131.78575 * 38.74331 * 15 14 13 18 18 C 1.47907 * 122.92652 * 193.55616 * 17 15 14 19 19 C 1.54016 * 106.91214 * 197.28046 * 18 17 15 20 20 C 1.54594 * 102.51689 * 330.14242 * 19 18 17 21 21 C 1.47232 * 128.22048 * 18.42672 * 17 15 14 22 22 H 1.09002 * 110.78427 * 63.34256 * 21 17 15 23 23 C 1.43774 * 117.36378 * 90.00429 * 12 9 7 24 24 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.17636 * 18.89962 * 13 12 9 26 26 H 1.08999 * 109.17574 * 138.13295 * 13 12 9 27 27 H 1.09003 * 109.17620 * 175.55861 * 14 13 12 28 28 H 1.09001 * 109.03623 * 56.51269 * 14 13 12 29 29 H 1.09006 * 109.97200 * 316.64413 * 18 17 15 30 30 H 1.09000 * 109.97405 * 77.91426 * 18 17 15 31 31 H 1.08996 * 110.80140 * 88.40343 * 19 18 17 32 32 H 1.09001 * 110.79771 * 211.69524 * 19 18 17 33 33 H 1.08997 * 110.70686 * 275.82289 * 20 19 18 34 34 H 1.08999 * 110.70847 * 152.57602 * 20 19 18 35 35 H 1.09000 * 108.98707 * 226.70243 * 23 12 9 36 36 H 1.09001 * 108.99209 * 345.52610 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 16 1.1235 -2.7200 0.0005 10 8 0.4510 -2.7950 1.2500 11 8 0.4519 -2.7955 -1.2494 12 7 2.2484 -3.9354 0.0005 13 6 2.6965 -4.4283 -1.2863 14 6 2.0197 -5.7376 -1.6391 15 6 2.3886 -6.8125 -0.6808 16 8 2.5529 -7.8989 -1.1942 17 7 2.5703 -6.8011 0.6299 18 6 3.2160 -7.9124 1.3618 19 6 2.8536 -7.7400 2.8487 20 6 2.6970 -6.2077 2.9800 21 6 2.1107 -5.7977 1.6045 22 1 1.0218 -5.7575 1.6340 23 6 2.6972 -4.4204 1.2774 24 1 -0.4850 0.8401 0.0004 25 1 2.4629 -3.6902 -2.0535 26 1 3.7751 -4.5819 -1.2550 27 1 2.3198 -6.0366 -2.6434 28 1 0.9391 -5.5962 -1.6180 29 1 2.8401 -8.8677 0.9953 30 1 4.2974 -7.8637 1.2341 31 1 1.9163 -8.2461 3.0799 32 1 3.6570 -8.1061 3.4879 33 1 3.6650 -5.7339 3.1429 34 1 2.0044 -5.9584 3.7839 35 1 3.7848 -4.4912 1.2675 36 1 2.3949 -3.7147 2.0512 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192973897.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:06 Heat of formation + Delta-G solvation = -141.041251 kcal Electronic energy + Delta-G solvation = -22351.957257 eV Core-core repulsion = 18961.493192 eV Total energy + Delta-G solvation = -3390.464065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 7.01 seconds Orbital eigenvalues (eV) -41.74231 -38.79709 -37.71140 -37.38587 -36.11621 -35.14905 -33.03886 -32.20753 -30.74847 -28.23470 -26.15677 -25.26573 -23.10500 -22.16523 -20.78016 -19.92412 -19.33689 -18.50977 -17.91891 -17.62145 -17.15340 -16.86331 -16.19266 -15.81013 -15.60116 -15.40890 -14.57662 -14.40629 -14.27574 -13.95963 -13.72492 -13.62468 -13.42866 -13.17113 -13.02220 -12.88333 -12.64603 -12.54438 -12.47909 -12.27074 -12.19590 -12.02390 -11.68950 -11.59728 -11.25703 -10.94220 -10.88447 -10.14244 -9.59753 -8.74068 -7.47593 0.28334 1.34534 1.36483 1.48337 1.53426 1.93320 2.21338 2.58906 2.71292 3.43625 3.59157 3.70857 3.79092 3.90088 3.96035 4.07709 4.19382 4.24175 4.27022 4.40925 4.51887 4.56404 4.72036 4.75331 4.84370 4.91074 4.97214 5.05723 5.08012 5.17354 5.29470 5.34254 5.37355 5.91895 6.01626 6.55421 6.79822 7.02038 8.21208 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.027425 B = 0.005765 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.709442 B = 4855.786582 C = 5296.512636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.988 3.012 4 H -0.246 1.246 5 H -0.262 1.262 6 H -0.260 1.260 7 C -1.037 5.037 8 H 0.121 0.879 9 S 2.705 3.295 10 O -1.033 7.033 11 O -1.037 7.037 12 N -0.995 5.995 13 C 0.124 3.876 14 C -0.141 4.141 15 C 0.525 3.475 16 O -0.609 6.609 17 N -0.599 5.599 18 C 0.100 3.900 19 C -0.119 4.119 20 C -0.119 4.119 21 C 0.101 3.899 22 H 0.065 0.935 23 C 0.106 3.894 24 H 0.298 0.702 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.133 0.867 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.004 -9.010 5.882 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.807 3.193 4 H -0.169 1.169 5 H -0.187 1.187 6 H -0.184 1.184 7 C -1.170 5.170 8 H 0.139 0.861 9 S 2.807 3.193 10 O -1.023 7.023 11 O -1.027 7.027 12 N -0.830 5.830 13 C -0.002 4.002 14 C -0.182 4.182 15 C 0.315 3.685 16 O -0.493 6.493 17 N -0.331 5.331 18 C -0.021 4.021 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.004 4.004 22 H 0.083 0.917 23 C -0.020 4.020 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.151 0.849 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.030 -9.646 5.534 14.325 hybrid contribution 0.085 1.154 -0.354 1.210 sum 9.115 -8.492 5.180 13.491 Atomic orbital electron populations 1.69994 1.08772 1.32251 1.41552 1.25994 0.95316 1.05325 0.87580 0.85125 0.79642 0.75285 0.79293 1.16863 1.18651 1.18398 1.30962 1.07199 1.12374 1.66486 0.86080 1.00595 0.73025 0.73999 0.71719 1.93301 1.74185 1.88241 1.46579 1.93304 1.74413 1.88250 1.46765 1.56300 1.62799 1.53213 1.10721 1.20684 1.00541 0.94783 0.84169 1.21646 1.03265 0.94005 0.99321 1.19765 0.76421 0.90212 0.82110 1.90647 1.53653 1.29850 1.75148 1.47959 1.57305 1.22856 1.04946 1.22281 0.97785 0.89555 0.92515 1.22508 1.03954 0.95725 0.93484 1.22786 1.03327 0.96356 0.93231 1.22648 0.98622 0.88642 0.90530 0.91729 1.21475 1.01240 0.95102 0.84194 0.89164 0.88730 0.88085 0.84909 0.89846 0.91935 0.90244 0.90554 0.86389 0.87821 0.88203 0.88168 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.85 13.19 21.45 0.28 -51.57 16 2 C 0.07 3.79 5.46 84.66 0.46 4.25 16 3 Si 0.99 39.63 29.54 68.60 2.03 41.66 16 4 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 5 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 7 C -1.04 -54.15 9.75 67.74 0.66 -53.49 16 8 H 0.12 5.66 7.81 -2.91 -0.02 5.64 16 9 S 2.70 137.61 4.71 -56.49 -0.27 137.34 16 10 O -1.03 -57.54 16.49 -128.00 -2.11 -59.65 16 11 O -1.04 -58.94 16.58 -128.00 -2.12 -61.06 16 12 N -0.99 -37.13 2.89 -527.96 -1.53 -38.65 16 13 C 0.12 4.02 5.61 86.20 0.48 4.51 16 14 C -0.14 -4.56 5.86 28.75 0.17 -4.40 16 15 C 0.52 17.74 7.26 87.41 0.63 18.37 16 16 O -0.61 -23.62 16.20 -3.03 -0.05 -23.67 16 17 N -0.60 -17.29 3.06 -792.51 -2.43 -19.72 16 18 C 0.10 2.19 6.57 86.45 0.57 2.76 16 19 C -0.12 -1.77 6.99 31.48 0.22 -1.55 16 20 C -0.12 -2.08 6.36 31.83 0.20 -1.87 16 21 C 0.10 2.78 3.79 45.63 0.17 2.96 16 22 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 23 C 0.11 3.23 4.86 86.96 0.42 3.65 16 24 H 0.30 15.53 8.31 -92.71 -0.77 14.76 16 25 H 0.09 3.25 7.09 -2.39 -0.02 3.23 16 26 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.13 3.71 8.02 -2.39 -0.02 3.69 16 28 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.06 1.55 7.65 -2.38 -0.02 1.54 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 1.42 7.66 -2.39 -0.02 1.40 16 34 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.10 2.40 7.99 -2.39 -0.02 2.38 16 36 H 0.10 3.16 6.90 -2.39 -0.02 3.14 16 Total: -1.00 -77.28 304.91 -1.11 -78.39 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 1.08 Total: 21.75 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 4.00 Total: -24.81 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -3.67 Total: -109.94 kcal Atomic # 8 Polarization: -140.10 SS G_CDS: -4.28 Total: -144.39 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: 137.61 SS G_CDS: -0.27 Total: 137.34 kcal Total: -77.28 -1.11 -78.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973897.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.649 kcal (2) G-P(sol) polarization free energy of solvation -77.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.01 seconds