Wall clock time and date at job start Tue Mar 31 2020 03:24:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86800 * 120.00099 * 2 1
4 4 H 1.48500 * 109.47486 * 270.00327 * 3 2 1
5 5 H 1.48507 * 109.46947 * 30.00306 * 3 2 1
6 6 H 1.48500 * 109.47294 * 149.99792 * 3 2 1
7 7 C 1.37873 * 120.00239 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00486 * 179.97438 * 7 2 1
9 9 S 1.76200 * 119.99949 * 359.97438 * 7 2 1
10 10 O 1.42104 * 106.40359 * 66.45812 * 9 7 2
11 11 O 1.42100 * 106.40262 * 293.54219 * 9 7 2
12 12 N 1.65595 * 107.21978 * 179.97438 * 9 7 2
13 13 C 1.46504 * 120.00106 * 65.00394 * 12 9 7
14 14 C 1.50701 * 109.47396 * 164.99999 * 13 12 9
15 15 O 1.21280 * 119.99781 * 359.97438 * 14 13 12
16 16 N 1.34771 * 119.99622 * 180.02562 * 14 13 12
17 17 C 1.46505 * 119.99622 * 179.97438 * 16 14 13
18 18 C 1.50703 * 109.47064 * 179.97438 * 17 16 14
19 19 C 1.34515 * 125.79060 * 89.99944 * 18 17 16
20 20 C 1.41380 * 106.83832 * 179.97438 * 19 18 17
21 21 C 1.34506 * 106.84493 * 359.97438 * 20 19 18
22 22 O 1.34306 * 125.78568 * 269.69282 * 18 17 16
23 23 H 0.96999 * 119.99900 * 0.02562 * 1 2 3
24 24 H 0.97008 * 120.00234 * 244.99672 * 12 9 7
25 25 H 1.09001 * 109.46891 * 44.99657 * 13 12 9
26 26 H 1.09002 * 109.46910 * 284.99961 * 13 12 9
27 27 H 0.96996 * 120.00772 * 359.97438 * 16 14 13
28 28 H 1.09002 * 109.47068 * 299.99729 * 17 16 14
29 29 H 1.09001 * 109.47372 * 59.99816 * 17 16 14
30 30 H 1.07996 * 126.58016 * 0.03378 * 19 18 17
31 31 H 1.08006 * 126.57610 * 179.97438 * 20 19 18
32 32 H 1.08005 * 125.79499 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0465 -1.4000
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 16 1.1236 -2.7200 -0.0005
10 8 0.4509 -2.7950 -1.2500
11 8 0.4519 -2.7955 1.2494
12 7 2.2484 -3.9353 -0.0019
13 6 3.1403 -4.1093 1.1472
14 6 3.7956 -5.4644 1.0739
15 8 3.5422 -6.2115 0.1527
16 7 4.6624 -5.8464 2.0325
17 6 5.2991 -7.1640 1.9615
18 6 6.2166 -7.3429 3.1436
19 6 5.8726 -7.8649 4.3346
20 6 7.0332 -7.8438 5.1417
21 6 8.0172 -7.3107 4.3954
22 8 7.5180 -7.0135 3.1845
23 1 -0.4850 0.8400 -0.0004
24 1 2.3166 -4.5322 -0.7636
25 1 2.5638 -4.0339 2.0692
26 1 3.9063 -3.3340 1.1332
27 1 4.8648 -5.2491 2.7695
28 1 4.5327 -7.9390 1.9754
29 1 5.8758 -7.2397 1.0397
30 1 4.8972 -8.2308 4.6194
31 1 7.1142 -8.1894 6.1617
32 1 9.0368 -7.1522 4.7145
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001192995625.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:24:22
Heat of formation + Delta-G solvation = -110.463519 kcal
Electronic energy + Delta-G solvation = -19980.944422 eV
Core-core repulsion = 16455.973212 eV
Total energy + Delta-G solvation = -3524.971210 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 288.066 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-42.91442 -39.66576 -35.34640 -35.19846 -33.97462 -33.91113 -33.29189 -33.06532
-30.82875 -27.36683 -26.14280 -25.08197 -22.09695 -20.92749 -20.65893 -19.12770
-18.13163 -17.62114 -16.81926 -16.65115 -15.97340 -15.84711 -15.59144 -15.03766
-14.62229 -14.56109 -14.03082 -13.61537 -13.42902 -13.17031 -13.02065 -12.95639
-12.59556 -12.15891 -11.98337 -11.27257 -11.21998 -10.61316 -10.55295 -10.30358
-10.29000 -10.20427 -9.96122 -9.32359 -9.25620 -9.06827 -8.89483 -8.54159
-6.70914 -5.33647 1.25669 2.18811 2.30837 2.58288 2.64334 3.06547
3.13003 3.18072 3.29420 4.05926 4.24188 4.63583 4.65842 4.68376
4.70384 4.89422 5.06983 5.31264 5.45206 5.57257 5.60035 5.64143
5.71827 5.85776 6.11566 6.16416 6.38281 6.77373 6.78072 7.29417
7.33657 7.90521 7.97906 8.14038 8.87783 10.23329
Molecular weight = 288.07amu
Principal moments of inertia in cm(-1)
A = 0.024637 B = 0.003487 C = 0.003225
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1136.232011 B = 8028.511088 C = 8680.984174
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.844 5.844
2 C 0.133 3.867
3 Si 0.922 3.078
4 H -0.267 1.267
5 H -0.275 1.275
6 H -0.263 1.263
7 C -1.022 5.022
8 H 0.103 0.897
9 S 2.717 3.283
10 O -1.001 7.001
11 O -1.006 7.006
12 N -1.126 6.126
13 C 0.111 3.889
14 C 0.517 3.483
15 O -0.531 6.531
16 N -0.732 5.732
17 C 0.203 3.797
18 C -0.036 4.036
19 C -0.184 4.184
20 C -0.218 4.218
21 C -0.031 4.031
22 O -0.171 6.171
23 H 0.291 0.709
24 H 0.412 0.588
25 H 0.107 0.893
26 H 0.093 0.907
27 H 0.407 0.593
28 H 0.100 0.900
29 H 0.085 0.915
30 H 0.152 0.848
31 H 0.150 0.850
32 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.434 -11.681 9.878 21.730
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.474 5.474
2 C -0.085 4.085
3 Si 0.746 3.254
4 H -0.192 1.192
5 H -0.200 1.200
6 H -0.187 1.187
7 C -1.155 5.155
8 H 0.121 0.879
9 S 2.817 3.183
10 O -0.991 6.991
11 O -0.996 6.996
12 N -0.884 5.884
13 C -0.020 4.020
14 C 0.303 3.697
15 O -0.406 6.406
16 N -0.387 5.387
17 C 0.080 3.920
18 C -0.086 4.086
19 C -0.204 4.204
20 C -0.237 4.237
21 C -0.099 4.099
22 O -0.067 6.067
23 H 0.102 0.898
24 H 0.246 0.754
25 H 0.125 0.875
26 H 0.111 0.889
27 H 0.242 0.758
28 H 0.118 0.882
29 H 0.104 0.896
30 H 0.170 0.830
31 H 0.168 0.832
32 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges 14.251 -12.054 9.104 20.767
hybrid contribution 1.237 1.106 0.415 1.710
sum 15.488 -10.948 9.519 21.221
Atomic orbital electron populations
1.69897 1.06789 1.30773 1.39901 1.24747 0.94466 1.00829 0.88504
0.86149 0.80072 0.80033 0.79185 1.19214 1.19999 1.18694 1.30551
1.06097 1.11828 1.67067 0.87912 1.00401 0.71968 0.73036 0.72911
1.93386 1.72752 1.87493 1.45515 1.93354 1.72776 1.87491 1.45998
1.55902 1.54971 1.51550 1.25947 1.20841 0.95208 0.93483 0.92434
1.20959 0.78200 0.89330 0.81244 1.90681 1.61798 1.54491 1.33670
1.46032 1.46251 1.18120 1.28335 1.19558 0.92624 0.86538 0.93311
1.22328 0.82853 1.05196 0.98197 1.21750 1.00549 1.04922 0.93200
1.21899 0.93175 1.06783 1.01873 1.24142 1.00177 1.02828 0.82783
1.84059 1.23332 1.65530 1.33770 0.89845 0.75364 0.87500 0.88876
0.75839 0.88188 0.89631 0.83027 0.83209 0.77911
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -24.57 13.19 55.43 0.73 -23.84 16
2 C 0.13 3.64 5.46 -17.82 -0.10 3.55 16
3 Si 0.92 20.17 29.54 -169.99 -5.02 15.15 16
4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16
5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16
6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16
7 C -1.02 -27.45 9.72 30.60 0.30 -27.15 16
8 H 0.10 2.48 7.81 -52.49 -0.41 2.07 16
9 S 2.72 71.52 5.02 -107.50 -0.54 70.98 16
10 O -1.00 -29.64 18.02 -57.17 -1.03 -30.67 16
11 O -1.01 -28.68 17.49 -57.17 -1.00 -29.68 16
12 N -1.13 -23.04 5.93 -11.65 -0.07 -23.11 16
13 C 0.11 1.80 6.70 -5.19 -0.03 1.76 16
14 C 0.52 7.60 7.90 -10.99 -0.09 7.52 16
15 O -0.53 -9.49 15.73 5.56 0.09 -9.40 16
16 N -0.73 -7.93 5.55 -61.47 -0.34 -8.27 16
17 C 0.20 1.99 6.20 -5.19 -0.03 1.96 16
18 C -0.04 -0.33 6.69 -35.62 -0.24 -0.57 16
19 C -0.18 -1.56 10.81 -39.70 -0.43 -1.99 16
20 C -0.22 -1.63 10.91 -39.71 -0.43 -2.06 16
21 C -0.03 -0.22 12.09 29.41 0.36 0.13 16
22 O -0.17 -1.65 10.65 5.68 0.06 -1.59 16
23 H 0.29 7.60 8.31 -40.82 -0.34 7.26 16
24 H 0.41 8.15 7.70 -34.47 -0.27 7.88 16
25 H 0.11 1.64 7.75 -51.93 -0.40 1.24 16
26 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16
27 H 0.41 3.52 8.46 -40.82 -0.35 3.17 16
28 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16
29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16
30 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16
31 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16
32 H 0.20 0.70 8.06 -52.48 -0.42 0.28 16
LS Contribution 307.56 15.07 4.63 4.63
Total: -1.00 -37.36 307.56 -6.28 -43.64
By element:
Atomic # 1 Polarization: 12.11 SS G_CDS: -3.10 Total: 9.02 kcal
Atomic # 6 Polarization: -16.16 SS G_CDS: -0.70 Total: -16.86 kcal
Atomic # 7 Polarization: -55.54 SS G_CDS: 0.32 Total: -55.22 kcal
Atomic # 8 Polarization: -69.46 SS G_CDS: -1.88 Total: -71.34 kcal
Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal
Atomic # 16 Polarization: 71.52 SS G_CDS: -0.54 Total: 70.98 kcal
Total LS contribution 4.63 Total: 4.63 kcal
Total: -37.36 -6.28 -43.64 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192995625.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -66.825 kcal
(2) G-P(sol) polarization free energy of solvation -37.357 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.183 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.464 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds