Wall clock time and date at job start Tue Mar 31 2020 03:24:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86800 * 120.00099 * 2 1
4 4 H 1.48500 * 109.47486 * 270.00327 * 3 2 1
5 5 H 1.48507 * 109.46947 * 30.00306 * 3 2 1
6 6 H 1.48500 * 109.47294 * 149.99792 * 3 2 1
7 7 C 1.37873 * 120.00239 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00486 * 179.97438 * 7 2 1
9 9 S 1.76200 * 119.99949 * 359.97438 * 7 2 1
10 10 O 1.42104 * 106.40359 * 66.45812 * 9 7 2
11 11 O 1.42100 * 106.40262 * 293.54219 * 9 7 2
12 12 N 1.65595 * 107.21978 * 179.97438 * 9 7 2
13 13 C 1.46504 * 120.00106 * 65.00394 * 12 9 7
14 14 C 1.50701 * 109.47396 * 164.99999 * 13 12 9
15 15 O 1.21280 * 119.99781 * 359.97438 * 14 13 12
16 16 N 1.34771 * 119.99622 * 180.02562 * 14 13 12
17 17 C 1.46505 * 119.99622 * 179.97438 * 16 14 13
18 18 C 1.50703 * 109.47064 * 179.97438 * 17 16 14
19 19 C 1.34515 * 125.79060 * 89.99944 * 18 17 16
20 20 C 1.41380 * 106.83832 * 179.97438 * 19 18 17
21 21 C 1.34506 * 106.84493 * 359.97438 * 20 19 18
22 22 O 1.34306 * 125.78568 * 269.69282 * 18 17 16
23 23 H 0.96999 * 119.99900 * 0.02562 * 1 2 3
24 24 H 0.97008 * 120.00234 * 244.99672 * 12 9 7
25 25 H 1.09001 * 109.46891 * 44.99657 * 13 12 9
26 26 H 1.09002 * 109.46910 * 284.99961 * 13 12 9
27 27 H 0.96996 * 120.00772 * 359.97438 * 16 14 13
28 28 H 1.09002 * 109.47068 * 299.99729 * 17 16 14
29 29 H 1.09001 * 109.47372 * 59.99816 * 17 16 14
30 30 H 1.07996 * 126.58016 * 0.03378 * 19 18 17
31 31 H 1.08006 * 126.57610 * 179.97438 * 20 19 18
32 32 H 1.08005 * 125.79499 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0465 -1.4000
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 16 1.1236 -2.7200 -0.0005
10 8 0.4509 -2.7950 -1.2500
11 8 0.4519 -2.7955 1.2494
12 7 2.2484 -3.9353 -0.0019
13 6 3.1403 -4.1093 1.1472
14 6 3.7956 -5.4644 1.0739
15 8 3.5422 -6.2115 0.1527
16 7 4.6624 -5.8464 2.0325
17 6 5.2991 -7.1640 1.9615
18 6 6.2166 -7.3429 3.1436
19 6 5.8726 -7.8649 4.3346
20 6 7.0332 -7.8438 5.1417
21 6 8.0172 -7.3107 4.3954
22 8 7.5180 -7.0135 3.1845
23 1 -0.4850 0.8400 -0.0004
24 1 2.3166 -4.5322 -0.7636
25 1 2.5638 -4.0339 2.0692
26 1 3.9063 -3.3340 1.1332
27 1 4.8648 -5.2491 2.7695
28 1 4.5327 -7.9390 1.9754
29 1 5.8758 -7.2397 1.0397
30 1 4.8972 -8.2308 4.6194
31 1 7.1142 -8.1894 6.1617
32 1 9.0368 -7.1522 4.7145
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001192995625.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:24:21
Heat of formation + Delta-G solvation = -142.867958 kcal
Electronic energy + Delta-G solvation = -19982.349584 eV
Core-core repulsion = 16455.973212 eV
Total energy + Delta-G solvation = -3526.376372 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 288.066 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-43.53438 -40.84112 -37.41325 -36.34601 -36.13907 -35.48865 -35.09039 -33.92016
-31.64241 -28.46401 -28.23487 -26.08389 -22.69762 -21.82664 -21.54689 -21.06774
-19.50770 -19.02265 -18.29101 -17.65258 -17.53189 -16.92427 -16.74717 -16.68197
-16.09230 -15.88972 -15.42623 -15.18079 -14.60052 -14.33244 -13.97839 -13.75916
-13.72746 -13.52976 -13.26449 -12.98369 -12.95983 -12.59062 -12.50346 -12.42620
-12.25469 -11.25720 -11.22000 -11.02275 -10.87180 -10.37451 -10.20900 -9.52384
-8.72856 -7.46543 0.28921 0.62875 1.38631 1.39432 1.46181 1.55302
1.62480 1.95100 2.22827 2.33595 2.61832 2.95712 3.59648 3.72197
3.73005 4.11874 4.13823 4.33814 4.36860 4.37836 4.51721 4.55909
4.89674 4.93774 5.01367 5.14134 5.21247 5.31536 5.57220 5.92354
6.16800 6.21752 6.41854 6.80790 7.04865 8.23922
Molecular weight = 288.07amu
Principal moments of inertia in cm(-1)
A = 0.024637 B = 0.003487 C = 0.003225
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1136.232011 B = 8028.511088 C = 8680.984174
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.069 3.931
3 Si 0.994 3.006
4 H -0.260 1.260
5 H -0.265 1.265
6 H -0.242 1.242
7 C -1.037 5.037
8 H 0.128 0.872
9 S 2.723 3.277
10 O -1.045 7.045
11 O -1.037 7.037
12 N -1.118 6.118
13 C 0.098 3.902
14 C 0.523 3.477
15 O -0.567 6.567
16 N -0.712 5.712
17 C 0.205 3.795
18 C -0.054 4.054
19 C -0.185 4.185
20 C -0.231 4.231
21 C -0.026 4.026
22 O -0.189 6.189
23 H 0.299 0.701
24 H 0.416 0.584
25 H 0.114 0.886
26 H 0.122 0.878
27 H 0.419 0.581
28 H 0.104 0.896
29 H 0.081 0.919
30 H 0.161 0.839
31 H 0.170 0.830
32 H 0.238 0.762
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.049 -11.097 11.282 24.004
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.526 5.526
2 C -0.144 4.144
3 Si 0.812 3.188
4 H -0.184 1.184
5 H -0.189 1.189
6 H -0.165 1.165
7 C -1.171 5.171
8 H 0.146 0.854
9 S 2.824 3.176
10 O -1.035 7.035
11 O -1.027 7.027
12 N -0.879 5.879
13 C -0.032 4.032
14 C 0.309 3.691
15 O -0.446 6.446
16 N -0.367 5.367
17 C 0.082 3.918
18 C -0.104 4.104
19 C -0.205 4.205
20 C -0.250 4.250
21 C -0.094 4.094
22 O -0.086 6.086
23 H 0.109 0.891
24 H 0.251 0.749
25 H 0.132 0.868
26 H 0.139 0.861
27 H 0.256 0.744
28 H 0.122 0.878
29 H 0.099 0.901
30 H 0.178 0.822
31 H 0.187 0.813
32 H 0.254 0.746
Dipole moment (debyes) X Y Z Total
from point charges 16.885 -11.501 10.552 22.994
hybrid contribution 0.500 0.809 0.068 0.954
sum 17.385 -10.691 10.619 23.007
Atomic orbital electron populations
1.70000 1.08884 1.32389 1.41306 1.26046 0.95355 1.05460 0.87516
0.85079 0.79297 0.74616 0.79844 1.18397 1.18911 1.16458 1.30864
1.07451 1.11958 1.66783 0.85446 0.99860 0.72401 0.73752 0.71560
1.93319 1.74706 1.88338 1.47122 1.93305 1.74306 1.88176 1.46898
1.55304 1.54846 1.50244 1.27498 1.21206 0.95482 0.95567 0.90932
1.20620 0.78579 0.88424 0.81488 1.90672 1.63355 1.55221 1.35331
1.45865 1.44650 1.18748 1.27398 1.19557 0.92839 0.85699 0.93708
1.22152 0.83038 1.06938 0.98258 1.22018 1.01414 1.04031 0.93079
1.22226 0.92806 1.07106 1.02872 1.24903 1.01536 1.01290 0.81678
1.84047 1.23427 1.66025 1.35058 0.89101 0.74886 0.86790 0.86067
0.74374 0.87804 0.90059 0.82173 0.81251 0.74555
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 27.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -52.63 13.19 21.45 0.28 -52.34 16
2 C 0.07 3.75 5.46 84.65 0.46 4.21 16
3 Si 0.99 39.87 29.54 68.60 2.03 41.90 16
4 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16
5 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16
6 H -0.24 -8.80 7.11 99.48 0.71 -8.09 16
7 C -1.04 -54.95 9.72 67.73 0.66 -54.29 16
8 H 0.13 5.88 7.81 -2.91 -0.02 5.86 16
9 S 2.72 145.31 5.02 -56.49 -0.28 145.03 16
10 O -1.04 -63.65 18.02 -128.00 -2.31 -65.95 16
11 O -1.04 -60.23 17.49 -128.00 -2.24 -62.47 16
12 N -1.12 -45.69 5.93 -190.78 -1.13 -46.82 16
13 C 0.10 3.04 6.70 85.63 0.57 3.61 16
14 C 0.52 14.89 7.90 87.66 0.69 15.58 16
15 O -0.57 -20.13 15.73 -3.03 -0.05 -20.18 16
16 N -0.71 -14.42 5.55 -466.78 -2.59 -17.01 16
17 C 0.20 3.82 6.20 85.63 0.53 4.35 16
18 C -0.05 -0.93 6.69 24.83 0.17 -0.77 16
19 C -0.19 -2.82 10.81 22.19 0.24 -2.58 16
20 C -0.23 -2.89 10.91 22.19 0.24 -2.65 16
21 C -0.03 -0.31 12.09 66.97 0.81 0.50 16
22 O -0.19 -3.31 10.65 -2.58 -0.03 -3.34 16
23 H 0.30 15.78 8.31 -92.71 -0.77 15.01 16
24 H 0.42 16.60 7.70 -96.74 -0.75 15.85 16
25 H 0.11 3.39 7.75 -2.39 -0.02 3.37 16
26 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16
27 H 0.42 6.44 8.46 -92.71 -0.78 5.65 16
28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16
29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16
30 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16
31 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16
32 H 0.24 0.81 8.06 -2.91 -0.02 0.78 16
Total: -1.00 -81.31 307.56 -2.29 -83.60
By element:
Atomic # 1 Polarization: 29.95 SS G_CDS: -0.35 Total: 29.60 kcal
Atomic # 6 Polarization: -36.40 SS G_CDS: 4.38 Total: -32.02 kcal
Atomic # 7 Polarization: -112.73 SS G_CDS: -3.44 Total: -116.17 kcal
Atomic # 8 Polarization: -147.32 SS G_CDS: -4.62 Total: -151.94 kcal
Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal
Atomic # 16 Polarization: 145.31 SS G_CDS: -0.28 Total: 145.03 kcal
Total: -81.31 -2.29 -83.60 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192995625.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.268 kcal
(2) G-P(sol) polarization free energy of solvation -81.310 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.578 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.290 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.600 kcal
(6) G-S(sol) free energy of system = (1) + (5) -142.868 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds