Wall clock time and date at job start Tue Mar 31 2020 04:12:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50697 * 120.00585 * 2 1
4 4 N 1.46496 * 109.47145 * 124.99686 * 3 2 1
5 5 C 1.45752 * 117.95084 * 269.73941 * 4 3 2
6 6 C 1.53101 * 110.38767 * 160.74287 * 5 4 3
7 7 C 1.53348 * 108.52799 * 51.12094 * 6 5 4
8 8 C 1.53070 * 108.42223 * 292.30668 * 7 6 5
9 9 H 1.08989 * 109.40388 * 288.77307 * 8 7 6
10 10 N 1.46503 * 109.33128 * 168.98432 * 8 7 6
11 11 S 1.65597 * 119.99997 * 95.79925 * 10 8 7
12 12 O 1.42097 * 106.40285 * 177.80101 * 11 10 8
13 13 O 1.42109 * 106.39843 * 310.71639 * 11 10 8
14 14 C 1.76196 * 107.22019 * 64.25607 * 11 10 8
15 15 H 1.08001 * 119.99707 * 4.44602 * 14 11 10
16 16 C 1.37878 * 120.00437 * 184.44686 * 14 11 10
17 17 N 1.31523 * 119.99487 * 0.02562 * 16 14 11
18 18 Si 1.86794 * 120.00194 * 180.02562 * 16 14 11
19 19 H 1.48496 * 109.47318 * 359.97438 * 18 16 14
20 20 H 1.48501 * 109.47236 * 120.00463 * 18 16 14
21 21 H 1.48502 * 109.46894 * 239.99675 * 18 16 14
22 22 C 1.33354 * 117.94656 * 90.00560 * 4 3 2
23 23 O 1.21282 * 118.24150 * 2.24531 * 22 4 3
24 24 H 1.07994 * 119.99868 * 179.97438 * 1 2 3
25 25 H 1.08004 * 119.99450 * 359.72440 * 1 2 3
26 26 H 1.08004 * 119.99661 * 179.97438 * 2 1 3
27 27 H 1.08991 * 109.47685 * 245.00285 * 3 2 1
28 28 H 1.09001 * 109.46501 * 5.00489 * 3 2 1
29 29 H 1.08998 * 109.30510 * 281.23778 * 5 4 3
30 30 H 1.09007 * 109.29980 * 40.61617 * 5 4 3
31 31 H 1.08997 * 109.81067 * 291.32751 * 6 5 4
32 32 H 1.09002 * 109.67823 * 170.82886 * 6 5 4
33 33 H 1.08996 * 109.67722 * 172.57719 * 7 6 5
34 34 H 1.09005 * 109.70410 * 52.05460 * 7 6 5
35 35 H 0.97005 * 120.00034 * 275.79829 * 10 8 7
36 36 H 0.96998 * 119.99511 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3050 0.0000
4 7 2.9938 1.3317 1.1314
5 6 2.5161 1.8770 2.3959
6 6 3.4044 1.4048 3.5500
7 6 4.8667 1.6918 3.1883
8 6 5.2637 0.7838 2.0217
9 1 5.3436 -0.2445 2.3742
10 7 6.5574 1.2173 1.4882
11 16 7.9511 0.4813 1.9963
12 8 9.0117 1.0830 1.2666
13 8 7.8989 0.4600 3.4163
14 6 7.8756 -1.1986 1.4703
15 1 7.0506 -1.5370 0.8610
16 6 8.8695 -2.0812 1.8367
17 7 9.8738 -1.6691 2.5792
18 14 8.7897 -3.8620 1.2784
19 1 7.5683 -4.0699 0.4599
20 1 9.9911 -4.1803 0.4656
21 1 8.7462 -4.7517 2.4666
22 6 4.2264 0.8606 0.9384
23 8 4.5257 0.4740 -0.1714
24 1 -0.5399 -0.9353 -0.0004
25 1 -0.5399 0.9354 0.0045
26 1 1.8500 -0.9354 0.0004
27 1 2.6214 1.4026 -0.9313
28 1 1.3587 2.1315 0.0897
29 1 2.5309 2.9658 2.3474
30 1 1.4937 1.5411 2.5697
31 1 3.2695 0.3345 3.7059
32 1 3.1404 1.9431 4.4603
33 1 5.5046 1.4853 4.0476
34 1 4.9743 2.7358 2.8938
35 1 6.5977 1.9354 0.8373
36 1 10.5729 -2.2901 2.8373
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001193002659.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:12:23
Heat of formation + Delta-G solvation = -104.399619 kcal
Electronic energy + Delta-G solvation = -21686.356223 eV
Core-core repulsion = 18297.481058 eV
Total energy + Delta-G solvation = -3388.875165 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 288.098 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.50858 -36.42405 -36.00933 -35.12595 -33.94286 -33.65606 -33.02322 -31.41886
-28.11418 -26.59200 -26.08609 -23.58415 -22.29637 -20.06708 -19.30982 -18.51959
-17.46171 -17.09038 -16.45801 -16.15442 -15.55088 -15.34155 -14.88448 -14.31244
-14.14602 -13.92355 -13.61590 -13.36716 -13.31936 -13.16570 -12.17674 -12.01604
-11.83062 -11.72691 -11.45922 -11.22813 -11.20038 -11.18824 -10.91546 -10.54832
-10.51182 -10.27112 -10.17980 -9.78622 -9.44387 -9.21589 -8.95502 -8.73968
-8.52224 -6.66501 -5.27163 1.99021 2.26305 2.84898 3.09079 3.12609
3.18346 3.27836 4.10696 4.55182 4.58626 4.68308 4.72964 4.79051
4.87509 4.96550 5.04323 5.29620 5.35214 5.48230 5.52564 5.63586
5.73937 5.77480 5.80866 5.91040 6.16669 6.23114 6.38897 6.43593
6.48431 6.61506 6.79322 7.37350 7.45797 7.84610 8.06362 8.31377
8.94369 10.27564
Molecular weight = 288.10amu
Principal moments of inertia in cm(-1)
A = 0.019685 B = 0.005601 C = 0.004888
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1422.065948 B = 4997.616238 C = 5726.551248
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.159 4.159
3 C 0.132 3.868
4 N -0.603 5.603
5 C 0.115 3.885
6 C -0.135 4.135
7 C -0.143 4.143
8 C 0.157 3.843
9 H 0.119 0.881
10 N -1.115 6.115
11 S 2.715 3.285
12 O -1.006 7.006
13 O -1.000 7.000
14 C -1.019 5.019
15 H 0.105 0.895
16 C 0.134 3.866
17 N -0.846 5.846
18 Si 0.919 3.081
19 H -0.262 1.262
20 H -0.271 1.271
21 H -0.271 1.271
22 C 0.510 3.490
23 O -0.529 6.529
24 H 0.098 0.902
25 H 0.096 0.904
26 H 0.111 0.889
27 H 0.097 0.903
28 H 0.079 0.921
29 H 0.065 0.935
30 H 0.073 0.927
31 H 0.076 0.924
32 H 0.087 0.913
33 H 0.096 0.904
34 H 0.073 0.927
35 H 0.405 0.595
36 H 0.290 0.710
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.206 5.496 0.439 19.023
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.178 4.178
3 C 0.009 3.991
4 N -0.338 5.338
5 C -0.008 4.008
6 C -0.173 4.173
7 C -0.183 4.183
8 C 0.045 3.955
9 H 0.137 0.863
10 N -0.868 5.868
11 S 2.814 3.186
12 O -0.996 6.996
13 O -0.990 6.990
14 C -1.152 5.152
15 H 0.124 0.876
16 C -0.084 4.084
17 N -0.476 5.476
18 Si 0.743 3.257
19 H -0.185 1.185
20 H -0.196 1.196
21 H -0.196 1.196
22 C 0.296 3.704
23 O -0.404 6.404
24 H 0.116 0.884
25 H 0.114 0.886
26 H 0.129 0.871
27 H 0.115 0.885
28 H 0.097 0.903
29 H 0.083 0.917
30 H 0.092 0.908
31 H 0.095 0.905
32 H 0.106 0.894
33 H 0.114 0.886
34 H 0.092 0.908
35 H 0.235 0.765
36 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -17.139 5.575 0.590 18.033
hybrid contribution -0.398 -1.197 -0.854 1.524
sum -17.538 4.377 -0.265 18.078
Atomic orbital electron populations
1.23809 0.95623 1.01813 1.01518 1.23367 0.96052 0.99447 0.98978
1.20602 0.91941 0.95018 0.91509 1.47420 1.11803 1.62453 1.12108
1.21468 0.98328 0.98148 0.82873 1.21919 0.94902 1.02898 0.97609
1.22301 0.96033 1.00373 0.99597 1.20379 0.83218 1.01060 0.90807
0.86305 1.55967 1.20077 1.51448 1.59271 1.00490 0.69620 0.75419
0.73033 1.93381 1.52263 1.79790 1.74188 1.93361 1.85418 1.88697
1.31508 1.30600 1.17968 1.19515 1.47159 0.87645 1.24738 0.92171
1.01143 0.90357 1.69914 1.09640 1.38040 1.29996 0.86154 0.79339
0.81078 0.79170 1.18534 1.19578 1.19642 1.20609 0.82391 0.76931
0.90448 1.90720 1.78584 1.46550 1.24505 0.88414 0.88602 0.87089
0.88528 0.90268 0.91714 0.90840 0.90527 0.89434 0.88561 0.90849
0.76453 0.90001
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.59 14.32 29.01 0.42 -1.18 16
2 C -0.16 -1.70 9.83 -36.03 -0.35 -2.06 16
3 C 0.13 1.44 5.66 -5.20 -0.03 1.41 16
4 N -0.60 -7.51 2.79 -176.23 -0.49 -8.00 16
5 C 0.11 1.04 6.32 -4.39 -0.03 1.01 16
6 C -0.13 -1.33 6.03 -26.50 -0.16 -1.49 16
7 C -0.14 -1.99 5.63 -26.51 -0.15 -2.14 16
8 C 0.16 2.77 2.86 -69.30 -0.20 2.58 16
9 H 0.12 2.20 7.80 -51.94 -0.41 1.80 16
10 N -1.12 -23.06 5.21 -6.07 -0.03 -23.09 16
11 S 2.71 72.51 4.95 -107.50 -0.53 71.98 16
12 O -1.01 -30.02 18.02 -57.17 -1.03 -31.05 16
13 O -1.00 -28.22 17.54 -57.17 -1.00 -29.23 16
14 C -1.02 -28.81 9.53 30.60 0.29 -28.51 16
15 H 0.11 2.85 7.81 -52.49 -0.41 2.44 16
16 C 0.13 3.79 5.46 -17.82 -0.10 3.70 16
17 N -0.85 -25.06 13.12 55.43 0.73 -24.33 16
18 Si 0.92 21.15 29.54 -169.99 -5.02 16.13 16
19 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16
20 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16
21 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16
22 C 0.51 8.50 7.11 -11.87 -0.08 8.42 16
23 O -0.53 -10.71 15.89 5.56 0.09 -10.63 16
24 H 0.10 0.75 8.06 -52.49 -0.42 0.32 16
25 H 0.10 0.65 7.84 -52.48 -0.41 0.24 16
26 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16
27 H 0.10 1.23 7.13 -51.93 -0.37 0.86 16
28 H 0.08 0.64 7.66 -51.93 -0.40 0.24 16
29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
30 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16
31 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16
32 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16
33 H 0.10 1.48 7.97 -51.93 -0.41 1.07 16
34 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16
35 H 0.40 7.62 8.84 -34.47 -0.30 7.32 16
36 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16
LS Contribution 321.26 15.07 4.84 4.84
Total: -1.00 -36.76 321.26 -7.65 -44.41
By element:
Atomic # 1 Polarization: 12.02 SS G_CDS: -4.80 Total: 7.22 kcal
Atomic # 6 Polarization: -17.87 SS G_CDS: -0.39 Total: -18.27 kcal
Atomic # 7 Polarization: -55.62 SS G_CDS: 0.20 Total: -55.42 kcal
Atomic # 8 Polarization: -68.95 SS G_CDS: -1.94 Total: -70.90 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal
Atomic # 16 Polarization: 72.51 SS G_CDS: -0.53 Total: 71.98 kcal
Total LS contribution 4.84 Total: 4.84 kcal
Total: -36.76 -7.65 -44.41 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001193002659.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.985 kcal
(2) G-P(sol) polarization free energy of solvation -36.764 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.749 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.400 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds