Wall clock time and date at job start Tue Mar 31 2020 04:12:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50697 * 120.00585 * 2 1
4 4 N 1.46496 * 109.47145 * 124.99686 * 3 2 1
5 5 C 1.45752 * 117.95084 * 269.73941 * 4 3 2
6 6 C 1.53101 * 110.38767 * 160.74287 * 5 4 3
7 7 C 1.53348 * 108.52799 * 51.12094 * 6 5 4
8 8 C 1.53070 * 108.42223 * 292.30668 * 7 6 5
9 9 H 1.08989 * 109.40388 * 288.77307 * 8 7 6
10 10 N 1.46503 * 109.33128 * 168.98432 * 8 7 6
11 11 S 1.65597 * 119.99997 * 95.79925 * 10 8 7
12 12 O 1.42097 * 106.40285 * 177.80101 * 11 10 8
13 13 O 1.42109 * 106.39843 * 310.71639 * 11 10 8
14 14 C 1.76196 * 107.22019 * 64.25607 * 11 10 8
15 15 H 1.08001 * 119.99707 * 4.44602 * 14 11 10
16 16 C 1.37878 * 120.00437 * 184.44686 * 14 11 10
17 17 N 1.31523 * 119.99487 * 0.02562 * 16 14 11
18 18 Si 1.86794 * 120.00194 * 180.02562 * 16 14 11
19 19 H 1.48496 * 109.47318 * 359.97438 * 18 16 14
20 20 H 1.48501 * 109.47236 * 120.00463 * 18 16 14
21 21 H 1.48502 * 109.46894 * 239.99675 * 18 16 14
22 22 C 1.33354 * 117.94656 * 90.00560 * 4 3 2
23 23 O 1.21282 * 118.24150 * 2.24531 * 22 4 3
24 24 H 1.07994 * 119.99868 * 179.97438 * 1 2 3
25 25 H 1.08004 * 119.99450 * 359.72440 * 1 2 3
26 26 H 1.08004 * 119.99661 * 179.97438 * 2 1 3
27 27 H 1.08991 * 109.47685 * 245.00285 * 3 2 1
28 28 H 1.09001 * 109.46501 * 5.00489 * 3 2 1
29 29 H 1.08998 * 109.30510 * 281.23778 * 5 4 3
30 30 H 1.09007 * 109.29980 * 40.61617 * 5 4 3
31 31 H 1.08997 * 109.81067 * 291.32751 * 6 5 4
32 32 H 1.09002 * 109.67823 * 170.82886 * 6 5 4
33 33 H 1.08996 * 109.67722 * 172.57719 * 7 6 5
34 34 H 1.09005 * 109.70410 * 52.05460 * 7 6 5
35 35 H 0.97005 * 120.00034 * 275.79829 * 10 8 7
36 36 H 0.96998 * 119.99511 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3050 0.0000
4 7 2.9938 1.3317 1.1314
5 6 2.5161 1.8770 2.3959
6 6 3.4044 1.4048 3.5500
7 6 4.8667 1.6918 3.1883
8 6 5.2637 0.7838 2.0217
9 1 5.3436 -0.2445 2.3742
10 7 6.5574 1.2173 1.4882
11 16 7.9511 0.4813 1.9963
12 8 9.0117 1.0830 1.2666
13 8 7.8989 0.4600 3.4163
14 6 7.8756 -1.1986 1.4703
15 1 7.0506 -1.5370 0.8610
16 6 8.8695 -2.0812 1.8367
17 7 9.8738 -1.6691 2.5792
18 14 8.7897 -3.8620 1.2784
19 1 7.5683 -4.0699 0.4599
20 1 9.9911 -4.1803 0.4656
21 1 8.7462 -4.7517 2.4666
22 6 4.2264 0.8606 0.9384
23 8 4.5257 0.4740 -0.1714
24 1 -0.5399 -0.9353 -0.0004
25 1 -0.5399 0.9354 0.0045
26 1 1.8500 -0.9354 0.0004
27 1 2.6214 1.4026 -0.9313
28 1 1.3587 2.1315 0.0897
29 1 2.5309 2.9658 2.3474
30 1 1.4937 1.5411 2.5697
31 1 3.2695 0.3345 3.7059
32 1 3.1404 1.9431 4.4603
33 1 5.5046 1.4853 4.0476
34 1 4.9743 2.7358 2.8938
35 1 6.5977 1.9354 0.8373
36 1 10.5729 -2.2901 2.8373
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001193002659.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:12:22
Heat of formation + Delta-G solvation = -134.427100 kcal
Electronic energy + Delta-G solvation = -21687.658312 eV
Core-core repulsion = 18297.481058 eV
Total energy + Delta-G solvation = -3390.177254 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 288.098 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.68728 -37.63531 -37.49463 -37.02181 -36.17858 -35.23550 -34.69711 -32.51363
-29.34457 -28.29615 -27.48274 -24.72969 -23.32181 -21.23067 -20.84406 -19.91359
-19.34323 -18.44748 -18.10744 -17.63097 -16.99679 -16.71202 -16.37137 -15.93334
-15.57155 -15.31027 -15.04583 -14.82534 -14.33804 -14.08309 -14.04018 -13.40256
-13.15599 -13.05084 -12.95491 -12.82517 -12.58735 -12.49676 -12.39989 -12.34301
-12.25295 -12.15390 -11.86610 -11.28860 -11.16210 -10.81669 -10.44875 -10.15711
-9.72354 -8.79220 -7.51525 0.25521 1.22581 1.28396 1.29712 1.47394
1.53155 2.11202 2.20359 2.53618 2.87727 3.43550 3.63841 3.82495
3.83484 3.99086 4.04934 4.14727 4.19137 4.42989 4.56314 4.59507
4.68399 4.73061 4.81231 4.96911 5.03795 5.10068 5.19836 5.25720
5.37629 5.43744 5.70065 5.83172 5.87027 6.14378 6.40600 6.75416
7.09207 8.17781
Molecular weight = 288.10amu
Principal moments of inertia in cm(-1)
A = 0.019685 B = 0.005601 C = 0.004888
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1422.065948 B = 4997.616238 C = 5726.551248
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.191 4.191
3 C 0.132 3.868
4 N -0.591 5.591
5 C 0.108 3.892
6 C -0.129 4.129
7 C -0.141 4.141
8 C 0.144 3.856
9 H 0.100 0.900
10 N -1.106 6.106
11 S 2.727 3.273
12 O -1.045 7.045
13 O -1.022 7.022
14 C -1.044 5.044
15 H 0.107 0.893
16 C 0.075 3.925
17 N -0.888 5.888
18 Si 0.986 3.014
19 H -0.258 1.258
20 H -0.257 1.257
21 H -0.250 1.250
22 C 0.510 3.490
23 O -0.578 6.578
24 H 0.105 0.895
25 H 0.124 0.876
26 H 0.080 0.920
27 H 0.070 0.930
28 H 0.120 0.880
29 H 0.092 0.908
30 H 0.106 0.894
31 H 0.071 0.929
32 H 0.123 0.877
33 H 0.076 0.924
34 H 0.087 0.913
35 H 0.413 0.587
36 H 0.301 0.699
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.457 5.685 0.855 22.214
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.210 4.210
3 C 0.010 3.990
4 N -0.323 5.323
5 C -0.013 4.013
6 C -0.167 4.167
7 C -0.180 4.180
8 C 0.033 3.967
9 H 0.118 0.882
10 N -0.862 5.862
11 S 2.827 3.173
12 O -1.035 7.035
13 O -1.012 7.012
14 C -1.177 5.177
15 H 0.125 0.875
16 C -0.139 4.139
17 N -0.519 5.519
18 Si 0.804 3.196
19 H -0.182 1.182
20 H -0.181 1.181
21 H -0.174 1.174
22 C 0.296 3.704
23 O -0.457 6.457
24 H 0.124 0.876
25 H 0.142 0.858
26 H 0.098 0.902
27 H 0.088 0.912
28 H 0.138 0.862
29 H 0.110 0.890
30 H 0.124 0.876
31 H 0.090 0.910
32 H 0.141 0.859
33 H 0.094 0.906
34 H 0.106 0.894
35 H 0.246 0.754
36 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -20.435 5.800 1.043 21.268
hybrid contribution 0.458 -1.188 -0.970 1.601
sum -19.977 4.613 0.073 20.503
Atomic orbital electron populations
1.24053 0.94520 1.03486 0.97273 1.23134 0.96891 0.98087 1.02934
1.20754 0.91803 0.96662 0.89762 1.47497 1.10405 1.60339 1.14050
1.21836 0.99351 0.99650 0.80487 1.21960 0.91849 1.03320 0.99560
1.22280 0.98682 1.00139 0.96918 1.20695 0.82150 1.01154 0.92716
0.88216 1.55354 1.20172 1.51107 1.59599 0.99786 0.70028 0.75037
0.72420 1.93316 1.55128 1.80323 1.74784 1.93318 1.86198 1.88932
1.32726 1.30919 1.18428 1.20765 1.47598 0.87464 1.25924 0.91459
1.06400 0.90091 1.69973 1.10622 1.40218 1.31101 0.85172 0.79860
0.74978 0.79609 1.18178 1.18076 1.17371 1.20330 0.83650 0.77243
0.89188 1.90695 1.79803 1.49165 1.26044 0.87646 0.85842 0.90208
0.91150 0.86177 0.88981 0.87609 0.91023 0.85901 0.90571 0.89406
0.75401 0.88919
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 24.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.04 14.32 67.78 0.97 -1.07 16
2 C -0.19 -3.78 9.83 25.64 0.25 -3.53 16
3 C 0.13 2.62 5.66 85.63 0.48 3.11 16
4 N -0.59 -13.62 2.79 -830.65 -2.32 -15.95 16
5 C 0.11 1.50 6.32 86.55 0.55 2.05 16
6 C -0.13 -2.17 6.03 30.74 0.19 -1.99 16
7 C -0.14 -3.79 5.63 30.73 0.17 -3.62 16
8 C 0.14 5.20 2.86 44.11 0.13 5.33 16
9 H 0.10 3.92 7.80 -2.39 -0.02 3.91 16
10 N -1.11 -47.55 5.21 -173.12 -0.90 -48.45 16
11 S 2.73 151.82 4.95 -56.49 -0.28 151.54 16
12 O -1.05 -65.01 18.02 -128.00 -2.31 -67.32 16
13 O -1.02 -59.94 17.54 -128.00 -2.25 -62.19 16
14 C -1.04 -61.02 9.53 67.73 0.65 -60.38 16
15 H 0.11 6.03 7.81 -2.91 -0.02 6.01 16
16 C 0.07 4.31 5.46 84.65 0.46 4.77 16
17 N -0.89 -53.77 13.12 21.45 0.28 -53.48 16
18 Si 0.99 43.38 29.54 68.60 2.03 45.41 16
19 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16
20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16
21 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16
22 C 0.51 17.18 7.11 87.71 0.62 17.81 16
23 O -0.58 -24.40 15.89 -3.04 -0.05 -24.45 16
24 H 0.11 1.25 8.06 -2.91 -0.02 1.23 16
25 H 0.12 0.99 7.84 -2.91 -0.02 0.96 16
26 H 0.08 2.06 8.06 -2.91 -0.02 2.04 16
27 H 0.07 1.79 7.13 -2.39 -0.02 1.77 16
28 H 0.12 1.39 7.66 -2.39 -0.02 1.37 16
29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16
30 H 0.11 0.93 8.10 -2.38 -0.02 0.91 16
31 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16
32 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16
33 H 0.08 2.37 7.97 -2.39 -0.02 2.35 16
34 H 0.09 2.09 8.13 -2.38 -0.02 2.07 16
35 H 0.41 16.22 8.84 -96.74 -0.85 15.37 16
36 H 0.30 16.20 8.31 -92.71 -0.77 15.43 16
Total: -1.00 -84.18 321.26 -1.09 -85.27
By element:
Atomic # 1 Polarization: 26.93 SS G_CDS: 0.23 Total: 27.16 kcal
Atomic # 6 Polarization: -42.01 SS G_CDS: 4.47 Total: -37.53 kcal
Atomic # 7 Polarization: -114.94 SS G_CDS: -2.94 Total: -117.88 kcal
Atomic # 8 Polarization: -149.36 SS G_CDS: -4.60 Total: -153.96 kcal
Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal
Atomic # 16 Polarization: 151.82 SS G_CDS: -0.28 Total: 151.54 kcal
Total: -84.18 -1.09 -85.27 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001193002659.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.157 kcal
(2) G-P(sol) polarization free energy of solvation -84.179 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.336 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.091 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.270 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.427 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds