Wall clock time and date at job start Tue Mar 31 2020 04:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99718 * 2 1 4 4 H 1.48499 * 109.47226 * 240.00332 * 3 2 1 5 5 H 1.48508 * 109.47284 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46966 * 120.00227 * 3 2 1 7 7 C 1.37869 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00163 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00024 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40461 * 66.45702 * 9 7 2 11 11 O 1.42105 * 106.39871 * 293.54007 * 9 7 2 12 12 N 1.65594 * 107.22124 * 180.02562 * 9 7 2 13 13 C 1.46506 * 119.99938 * 64.99695 * 12 9 7 14 14 H 1.09001 * 110.91822 * 332.55101 * 13 12 9 15 15 C 1.55157 * 111.00374 * 96.45826 * 13 12 9 16 16 C 1.54321 * 103.10033 * 153.66359 * 15 13 12 17 17 N 1.47019 * 107.27531 * 337.71659 * 16 15 13 18 18 C 1.34778 * 125.65277 * 178.97403 * 17 16 15 19 19 O 1.21276 * 120.00255 * 179.97438 * 18 17 16 20 20 C 1.50705 * 119.99371 * 359.97438 * 18 17 16 21 21 C 1.53000 * 117.49582 * 248.74174 * 20 18 17 22 22 C 1.53002 * 117.49230 * 180.08637 * 20 18 17 23 23 C 1.47431 * 108.70142 * 358.94050 * 17 16 15 24 24 H 0.96996 * 120.00204 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.00530 * 244.99813 * 12 9 7 26 26 H 1.09002 * 110.72219 * 35.21056 * 15 13 12 27 27 H 1.09003 * 110.71618 * 272.11669 * 15 13 12 28 28 H 1.09001 * 109.88480 * 97.13771 * 16 15 13 29 29 H 1.09004 * 109.87910 * 218.29695 * 16 15 13 30 30 H 1.08996 * 115.55669 * 34.41294 * 20 18 17 31 31 H 1.09005 * 117.49819 * 0.02562 * 21 20 18 32 32 H 1.08990 * 117.50200 * 145.02161 * 21 20 18 33 33 H 1.09007 * 117.49251 * 214.97558 * 22 20 18 34 34 H 1.08999 * 117.50518 * 359.97098 * 22 20 18 35 35 H 1.08999 * 110.36190 * 142.96411 * 23 17 16 36 36 H 1.08998 * 110.36491 * 265.18090 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7199 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4521 -2.7955 1.2495 12 7 2.2484 -3.9353 -0.0005 13 6 3.1396 -4.1087 1.1494 14 1 3.2971 -3.1618 1.6659 15 6 2.5910 -5.1874 2.1204 16 6 3.8647 -5.7119 2.8161 17 7 5.0012 -5.4051 1.9353 18 6 6.2939 -5.6847 2.1946 19 8 7.1520 -5.3849 1.3918 20 6 6.6729 -6.3697 3.4824 21 6 7.4552 -5.5533 4.5131 22 6 8.1568 -6.6579 3.7189 23 6 4.4925 -4.7418 0.7209 24 1 -0.4850 0.8400 0.0004 25 1 2.3173 -4.5325 -0.7618 26 1 2.0959 -5.9867 1.5689 27 1 1.9104 -4.7425 2.8462 28 1 3.9948 -5.2129 3.7765 29 1 3.7899 -6.7894 2.9631 30 1 5.9530 -7.0969 3.8577 31 1 7.6953 -4.5206 4.2600 32 1 7.2501 -5.7436 5.5665 33 1 8.4130 -7.5746 4.2503 34 1 8.8589 -6.3525 2.9430 35 1 5.1861 -3.9676 0.3928 36 1 4.3366 -5.4720 -0.0731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193002678.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:53 Heat of formation + Delta-G solvation = -100.211464 kcal Electronic energy + Delta-G solvation = -21094.911856 eV Core-core repulsion = 17706.218303 eV Total energy + Delta-G solvation = -3388.693553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.23905 -38.04407 -36.08768 -35.24636 -34.01086 -33.87617 -33.09115 -30.18560 -28.37522 -26.17134 -24.76167 -22.70623 -22.48499 -20.96102 -19.19039 -19.03376 -17.69172 -17.52193 -16.42523 -16.09928 -15.71287 -15.42924 -14.96964 -14.36024 -14.05578 -14.04209 -13.60792 -13.34505 -13.19628 -12.50887 -12.41661 -12.13034 -11.93998 -11.76837 -11.63357 -11.27152 -11.21870 -10.86824 -10.78656 -10.72295 -10.63942 -10.37918 -10.32008 -10.24365 -9.89519 -9.26728 -9.12538 -8.70974 -8.59615 -6.73618 -5.36354 2.22049 2.40671 2.87416 3.07388 3.12033 3.18139 3.66097 4.03535 4.27677 4.50363 4.56399 4.61369 4.66571 4.75061 4.83509 4.92798 5.11428 5.27259 5.33298 5.36208 5.49783 5.57818 5.71063 5.74632 5.85170 5.89347 5.90876 6.11690 6.16071 6.26978 6.46835 6.77908 7.28764 7.45210 7.78397 7.92650 8.10373 8.85719 10.20605 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.004415 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.939768 B = 6341.004661 C = 7000.446811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.134 3.866 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.023 5.023 8 H 0.102 0.898 9 S 2.714 3.286 10 O -1.004 7.004 11 O -1.002 7.002 12 N -1.125 6.125 13 C 0.153 3.847 14 H 0.107 0.893 15 C -0.152 4.152 16 C 0.102 3.898 17 N -0.613 5.613 18 C 0.557 3.443 19 O -0.543 6.543 20 C -0.190 4.190 21 C -0.152 4.152 22 C -0.149 4.149 23 C 0.100 3.900 24 H 0.292 0.708 25 H 0.404 0.596 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.625 -11.324 8.463 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.744 3.256 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.156 5.156 8 H 0.120 0.880 9 S 2.814 3.186 10 O -0.995 6.995 11 O -0.992 6.992 12 N -0.877 5.877 13 C 0.043 3.957 14 H 0.125 0.875 15 C -0.192 4.192 16 C -0.021 4.021 17 N -0.347 5.347 18 C 0.346 3.654 19 O -0.421 6.421 20 C -0.211 4.211 21 C -0.189 4.189 22 C -0.187 4.187 23 C -0.024 4.024 24 H 0.102 0.898 25 H 0.235 0.765 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.141 0.859 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.997 -11.112 8.200 17.049 hybrid contribution 0.837 0.866 -0.325 1.248 sum 10.834 -10.246 7.875 16.863 Atomic orbital electron populations 1.69883 1.06769 1.30901 1.39880 1.24726 0.94452 1.00799 0.88432 0.86211 0.79894 0.79694 0.79849 1.18819 1.20088 1.18855 1.30527 1.06080 1.11867 1.67177 0.87988 1.00477 0.72039 0.73152 0.72921 1.93385 1.72901 1.87548 1.45632 1.93365 1.72667 1.87412 1.45765 1.56047 1.54785 1.51129 1.25735 1.21690 0.88073 0.99047 0.86909 0.87497 1.23232 0.96318 0.99598 1.00015 1.22120 0.85449 1.00364 0.94177 1.48318 1.05838 1.59475 1.21088 1.19305 0.80583 0.78430 0.87054 1.90699 1.48431 1.53969 1.48969 1.22157 0.97468 1.04893 0.96584 1.22952 1.01934 0.97647 0.96373 1.22968 0.92745 1.00152 1.02815 1.22612 0.95518 0.97094 0.87159 0.89783 0.76525 0.90024 0.88383 0.90807 0.91292 0.85900 0.88150 0.87734 0.87977 0.87439 0.89574 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.39 13.19 55.43 0.73 -23.66 16 2 C 0.13 3.67 5.46 -17.82 -0.10 3.58 16 3 Si 0.92 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 7 C -1.02 -27.32 9.65 30.60 0.30 -27.03 16 8 H 0.10 2.49 7.81 -52.49 -0.41 2.08 16 9 S 2.71 68.53 4.97 -107.50 -0.53 67.99 16 10 O -1.00 -28.57 18.02 -57.17 -1.03 -29.60 16 11 O -1.00 -27.49 17.78 -57.17 -1.02 -28.51 16 12 N -1.12 -20.62 5.66 -2.84 -0.02 -20.64 16 13 C 0.15 2.43 3.59 -65.52 -0.24 2.19 16 14 H 0.11 1.81 8.00 -51.93 -0.42 1.40 16 15 C -0.15 -2.00 6.63 -24.90 -0.17 -2.16 16 16 C 0.10 1.08 6.28 -3.07 -0.02 1.07 16 17 N -0.61 -8.01 3.33 -170.21 -0.57 -8.58 16 18 C 0.56 7.67 7.63 -10.98 -0.08 7.59 16 19 O -0.54 -9.44 16.51 5.56 0.09 -9.35 16 20 C -0.19 -1.86 5.53 -91.77 -0.51 -2.37 16 21 C -0.15 -1.27 10.24 -26.69 -0.27 -1.55 16 22 C -0.15 -1.30 10.05 -26.69 -0.27 -1.57 16 23 C 0.10 1.43 6.59 -2.26 -0.01 1.42 16 24 H 0.29 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.40 6.34 8.76 -34.47 -0.30 6.03 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 30 H 0.12 0.94 7.74 -51.93 -0.40 0.54 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.11 1.11 7.67 -51.93 -0.40 0.71 16 35 H 0.09 1.32 8.04 -51.93 -0.42 0.90 16 36 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -35.83 323.24 -8.71 -44.54 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.85 Total: 6.45 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -1.37 Total: -18.84 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.15 Total: -52.88 kcal Atomic # 8 Polarization: -65.50 SS G_CDS: -1.95 Total: -67.45 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 68.53 SS G_CDS: -0.53 Total: 67.99 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.83 -8.71 -44.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002678.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.673 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds