Wall clock time and date at job start Tue Mar 31 2020 04:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99718 * 2 1 4 4 H 1.48499 * 109.47226 * 240.00332 * 3 2 1 5 5 H 1.48508 * 109.47284 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46966 * 120.00227 * 3 2 1 7 7 C 1.37869 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00163 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00024 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40461 * 66.45702 * 9 7 2 11 11 O 1.42105 * 106.39871 * 293.54007 * 9 7 2 12 12 N 1.65594 * 107.22124 * 180.02562 * 9 7 2 13 13 C 1.46506 * 119.99938 * 64.99695 * 12 9 7 14 14 H 1.09001 * 110.91822 * 332.55101 * 13 12 9 15 15 C 1.55157 * 111.00374 * 96.45826 * 13 12 9 16 16 C 1.54321 * 103.10033 * 153.66359 * 15 13 12 17 17 N 1.47019 * 107.27531 * 337.71659 * 16 15 13 18 18 C 1.34778 * 125.65277 * 178.97403 * 17 16 15 19 19 O 1.21276 * 120.00255 * 179.97438 * 18 17 16 20 20 C 1.50705 * 119.99371 * 359.97438 * 18 17 16 21 21 C 1.53000 * 117.49582 * 248.74174 * 20 18 17 22 22 C 1.53002 * 117.49230 * 180.08637 * 20 18 17 23 23 C 1.47431 * 108.70142 * 358.94050 * 17 16 15 24 24 H 0.96996 * 120.00204 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.00530 * 244.99813 * 12 9 7 26 26 H 1.09002 * 110.72219 * 35.21056 * 15 13 12 27 27 H 1.09003 * 110.71618 * 272.11669 * 15 13 12 28 28 H 1.09001 * 109.88480 * 97.13771 * 16 15 13 29 29 H 1.09004 * 109.87910 * 218.29695 * 16 15 13 30 30 H 1.08996 * 115.55669 * 34.41294 * 20 18 17 31 31 H 1.09005 * 117.49819 * 0.02562 * 21 20 18 32 32 H 1.08990 * 117.50200 * 145.02161 * 21 20 18 33 33 H 1.09007 * 117.49251 * 214.97558 * 22 20 18 34 34 H 1.08999 * 117.50518 * 359.97098 * 22 20 18 35 35 H 1.08999 * 110.36190 * 142.96411 * 23 17 16 36 36 H 1.08998 * 110.36491 * 265.18090 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7199 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4521 -2.7955 1.2495 12 7 2.2484 -3.9353 -0.0005 13 6 3.1396 -4.1087 1.1494 14 1 3.2971 -3.1618 1.6659 15 6 2.5910 -5.1874 2.1204 16 6 3.8647 -5.7119 2.8161 17 7 5.0012 -5.4051 1.9353 18 6 6.2939 -5.6847 2.1946 19 8 7.1520 -5.3849 1.3918 20 6 6.6729 -6.3697 3.4824 21 6 7.4552 -5.5533 4.5131 22 6 8.1568 -6.6579 3.7189 23 6 4.4925 -4.7418 0.7209 24 1 -0.4850 0.8400 0.0004 25 1 2.3173 -4.5325 -0.7618 26 1 2.0959 -5.9867 1.5689 27 1 1.9104 -4.7425 2.8462 28 1 3.9948 -5.2129 3.7765 29 1 3.7899 -6.7894 2.9631 30 1 5.9530 -7.0969 3.8577 31 1 7.6953 -4.5206 4.2600 32 1 7.2501 -5.7436 5.5665 33 1 8.4130 -7.5746 4.2503 34 1 8.8589 -6.3525 2.9430 35 1 5.1861 -3.9676 0.3928 36 1 4.3366 -5.4720 -0.0731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193002678.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:52 Heat of formation + Delta-G solvation = -128.888593 kcal Electronic energy + Delta-G solvation = -21096.155389 eV Core-core repulsion = 17706.218303 eV Total energy + Delta-G solvation = -3389.937087 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.27128 -39.12661 -37.37219 -36.93853 -36.13101 -35.35483 -35.04932 -31.33494 -29.53437 -28.26392 -25.76791 -23.50098 -23.25229 -22.19984 -21.10559 -20.04987 -19.36575 -18.60670 -18.29777 -17.41390 -17.10994 -16.72770 -16.39170 -15.91615 -15.56639 -15.24174 -15.04373 -14.60307 -14.24937 -14.01435 -13.61950 -13.40216 -13.38520 -13.12397 -13.01996 -12.91655 -12.49952 -12.42215 -12.41261 -12.33828 -12.21105 -11.78250 -11.50493 -11.42299 -11.24869 -11.03249 -10.95519 -10.28251 -9.72243 -8.76728 -7.49340 0.31271 1.33309 1.34444 1.42681 1.47492 1.85311 2.19997 2.57292 2.94246 2.94988 3.31141 3.61019 3.65531 3.83841 3.88923 3.96393 4.01737 4.15734 4.21966 4.30727 4.49907 4.63127 4.66554 4.76971 4.79241 4.87862 4.97384 5.02693 5.13277 5.20372 5.24442 5.26389 5.39306 5.87733 6.32664 6.45070 6.78082 7.06874 8.19483 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.004415 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.939768 B = 6341.004661 C = 7000.446811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.984 3.016 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.251 1.251 7 C -1.046 5.046 8 H 0.116 0.884 9 S 2.727 3.273 10 O -1.044 7.044 11 O -1.031 7.031 12 N -1.109 6.109 13 C 0.141 3.859 14 H 0.091 0.909 15 C -0.150 4.150 16 C 0.107 3.893 17 N -0.613 5.613 18 C 0.549 3.451 19 O -0.591 6.591 20 C -0.195 4.195 21 C -0.143 4.143 22 C -0.149 4.149 23 C 0.105 3.895 24 H 0.299 0.701 25 H 0.417 0.583 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.154 0.846 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.948 -12.234 10.155 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.803 3.197 4 H -0.179 1.179 5 H -0.186 1.186 6 H -0.175 1.175 7 C -1.179 5.179 8 H 0.134 0.866 9 S 2.827 3.173 10 O -1.034 7.034 11 O -1.020 7.020 12 N -0.867 5.867 13 C 0.032 3.968 14 H 0.110 0.890 15 C -0.190 4.190 16 C -0.015 4.015 17 N -0.347 5.347 18 C 0.340 3.660 19 O -0.472 6.472 20 C -0.216 4.216 21 C -0.180 4.180 22 C -0.186 4.186 23 C -0.020 4.020 24 H 0.110 0.890 25 H 0.252 0.748 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.122 0.878 30 H 0.171 0.829 31 H 0.101 0.899 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.298 -12.049 9.907 19.261 hybrid contribution 0.456 1.083 -0.860 1.456 sum 11.754 -10.966 9.047 18.446 Atomic orbital electron populations 1.69966 1.08588 1.32399 1.41250 1.25907 0.95321 1.05096 0.87580 0.85246 0.78877 0.75033 0.80593 1.17855 1.18614 1.17451 1.30938 1.07089 1.12978 1.66894 0.86551 0.99763 0.72370 0.73579 0.71630 1.93324 1.74671 1.88310 1.47075 1.93319 1.74069 1.88022 1.46612 1.55350 1.54200 1.49757 1.27344 1.21873 0.88788 0.99666 0.86497 0.89046 1.23215 0.97619 0.98819 0.99324 1.22262 0.82863 1.02591 0.93795 1.48412 1.06484 1.58889 1.20869 1.20092 0.80039 0.77922 0.87978 1.90674 1.49653 1.56031 1.50802 1.22242 0.98742 1.05714 0.94888 1.23056 1.00759 0.96618 0.97571 1.23043 0.91587 1.01544 1.02458 1.22436 0.94044 0.97117 0.88374 0.89049 0.74808 0.88900 0.89206 0.89019 0.87831 0.82854 0.89917 0.84681 0.85056 0.89853 0.91190 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.29 13.19 21.45 0.28 -52.01 16 2 C 0.07 4.08 5.46 84.65 0.46 4.54 16 3 Si 0.98 41.07 29.54 68.60 2.03 43.10 16 4 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 7 C -1.05 -56.41 9.65 67.73 0.65 -55.76 16 8 H 0.12 5.70 7.81 -2.91 -0.02 5.68 16 9 S 2.73 140.27 4.97 -56.49 -0.28 139.99 16 10 O -1.04 -60.87 18.02 -128.00 -2.31 -63.18 16 11 O -1.03 -57.70 17.78 -128.00 -2.28 -59.98 16 12 N -1.11 -40.68 5.66 -162.91 -0.92 -41.60 16 13 C 0.14 4.40 3.59 46.55 0.17 4.57 16 14 H 0.09 3.14 8.00 -2.39 -0.02 3.12 16 15 C -0.15 -3.69 6.63 31.78 0.21 -3.48 16 16 C 0.11 1.93 6.28 86.73 0.55 2.48 16 17 N -0.61 -14.92 3.33 -810.81 -2.70 -17.62 16 18 C 0.55 14.36 7.63 87.66 0.67 15.03 16 19 O -0.59 -20.64 16.51 -3.02 -0.05 -20.69 16 20 C -0.20 -3.25 5.53 -11.54 -0.06 -3.31 16 21 C -0.14 -2.00 10.24 30.62 0.31 -1.69 16 22 C -0.15 -2.25 10.05 30.62 0.31 -1.94 16 23 C 0.11 2.93 6.59 87.02 0.57 3.50 16 24 H 0.30 15.82 8.31 -92.71 -0.77 15.05 16 25 H 0.42 12.98 8.76 -96.74 -0.85 12.13 16 26 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 29 H 0.10 1.25 8.06 -2.38 -0.02 1.23 16 30 H 0.15 1.60 7.74 -2.39 -0.02 1.59 16 31 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.08 1.68 7.67 -2.39 -0.02 1.66 16 35 H 0.07 2.17 8.04 -2.39 -0.02 2.15 16 36 H 0.09 2.17 8.03 -2.39 -0.02 2.15 16 Total: -1.00 -79.82 323.24 -2.13 -81.95 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.25 Total: 26.09 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 3.84 Total: -36.05 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -3.34 Total: -111.23 kcal Atomic # 8 Polarization: -139.22 SS G_CDS: -4.63 Total: -143.85 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 140.27 SS G_CDS: -0.28 Total: 139.99 kcal Total: -79.82 -2.13 -81.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002678.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.938 kcal (2) G-P(sol) polarization free energy of solvation -79.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds