Wall clock time and date at job start Tue Mar 31 2020 03:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48495 * 109.47123 * 240.00010 * 3 2 1 5 5 H 1.48497 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47172 * 119.99715 * 3 2 1 7 7 C 1.38634 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99946 * 180.02562 * 7 2 1 9 9 O 1.34928 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.42896 * 116.99947 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.47314 * 30.00013 * 10 9 7 12 12 C 1.52997 * 109.47286 * 149.99774 * 10 9 7 13 13 N 1.46506 * 109.47059 * 294.99849 * 12 10 9 14 14 C 1.31870 * 119.13397 * 89.99573 * 13 12 10 15 15 C 1.38209 * 120.76375 * 179.74166 * 14 13 12 16 16 C 1.38654 * 119.15786 * 0.26353 * 15 14 13 17 17 C 1.38643 * 118.42321 * 359.97438 * 16 15 14 18 18 C 1.31872 * 119.14059 * 270.26081 * 13 12 10 19 19 C 1.53001 * 109.47386 * 269.99960 * 10 9 7 20 20 S 1.81394 * 109.47167 * 64.99723 * 19 10 9 21 21 O 1.42109 * 110.54494 * 291.62747 * 20 19 10 22 22 O 1.42105 * 110.54525 * 68.37919 * 20 19 10 23 23 O 1.52205 * 104.44956 * 180.02562 * 20 19 10 24 24 H 0.97003 * 119.99990 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47320 * 174.99953 * 12 10 9 26 26 H 1.08996 * 109.47563 * 54.99523 * 12 10 9 27 27 H 1.08002 * 119.62217 * 0.02926 * 14 13 12 28 28 H 1.07996 * 120.41962 * 180.27855 * 15 14 13 29 29 H 1.08006 * 120.78420 * 180.02562 * 16 15 14 30 30 H 1.08003 * 120.41994 * 180.02562 * 17 16 15 31 31 H 1.08004 * 119.61160 * 0.02562 * 18 13 12 32 32 H 1.08996 * 109.47400 * 185.00172 * 19 10 9 33 33 H 1.09000 * 109.46428 * 305.00247 * 19 10 9 34 34 H 0.96699 * 113.99688 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2849 2.7465 -0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3343 -2.3691 0.0005 10 6 2.1126 -3.5676 0.0005 11 1 3.0569 -3.3876 0.5144 12 6 1.3427 -4.6756 0.7218 13 7 1.1809 -4.3186 2.1335 14 6 0.1171 -3.6334 2.5045 15 6 -0.0720 -3.2832 3.8281 16 6 0.8765 -3.6570 4.7679 17 6 1.9840 -4.3724 4.3393 18 6 2.1055 -4.6864 2.9989 19 6 2.3904 -3.9953 -1.4419 20 16 3.4289 -2.7487 -2.2530 21 8 2.7051 -1.5397 -2.4368 22 8 4.7334 -2.7431 -1.6895 23 8 3.6313 -3.2826 -3.6639 24 1 -0.4850 0.8401 -0.0004 25 1 1.8959 -5.6117 0.6449 26 1 0.3615 -4.7947 0.2625 27 1 -0.6172 -3.3464 1.7664 28 1 -0.9475 -2.7258 4.1265 29 1 0.7549 -3.3976 5.8093 30 1 2.7424 -4.6803 5.0439 31 1 2.9656 -5.2428 2.6567 32 1 2.9069 -4.9552 -1.4433 33 1 1.4476 -4.0893 -1.9809 34 1 4.1759 -2.7139 -4.2252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224382357.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:14 Heat of formation + Delta-G solvation = -34.665582 kcal Electronic energy + Delta-G solvation = -21860.588875 eV Core-core repulsion = 18390.674682 eV Total energy + Delta-G solvation = -3469.914193 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.25133 -39.45472 -38.94975 -38.05607 -36.86167 -36.33106 -34.31795 -33.00606 -32.72023 -29.00768 -26.86374 -25.60834 -25.16399 -23.33218 -21.64900 -20.21762 -19.41482 -19.16935 -18.30234 -18.09609 -17.62716 -17.38592 -17.18730 -16.85294 -16.29436 -16.09510 -15.56341 -15.28715 -15.21737 -14.75760 -14.30063 -14.00728 -13.60322 -13.39085 -13.26181 -13.20043 -13.03836 -13.01139 -12.96490 -12.81505 -12.73921 -12.29127 -12.01635 -11.85846 -11.49379 -11.27161 -10.69325 -10.29223 -8.28365 -5.90553 -0.85947 -0.62948 -0.32038 0.96350 1.31687 1.41443 1.43850 1.86323 2.03100 2.21145 2.74614 3.05246 3.10190 3.16347 3.35698 3.44614 3.53280 3.57007 3.67007 3.72832 3.87101 3.91237 4.14396 4.36063 4.43395 4.46633 4.58074 4.74844 4.83384 4.96619 5.05814 5.20339 5.29895 5.37396 6.05493 7.24859 7.70389 8.90930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.016 3.984 3 Si 0.935 3.065 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.355 4.355 8 H 0.061 0.939 9 O -0.294 6.294 10 C 0.063 3.937 11 H 0.080 0.920 12 C 0.071 3.929 13 N -0.332 5.332 14 C 0.135 3.865 15 C -0.137 4.137 16 C -0.008 4.008 17 C -0.130 4.130 18 C 0.116 3.884 19 C -0.621 4.621 20 S 2.617 3.383 21 O -0.979 6.979 22 O -1.014 7.014 23 O -0.900 6.900 24 H 0.258 0.742 25 H 0.191 0.809 26 H 0.143 0.857 27 H 0.190 0.810 28 H 0.179 0.821 29 H 0.187 0.813 30 H 0.205 0.795 31 H 0.237 0.763 32 H 0.193 0.807 33 H 0.161 0.839 34 H 0.470 0.530 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 -21.123 13.304 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.182 4.182 3 Si 0.762 3.238 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.435 4.435 8 H 0.079 0.921 9 O -0.210 6.210 10 C 0.002 3.998 11 H 0.098 0.902 12 C -0.049 4.049 13 N 0.012 4.988 14 C -0.007 4.007 15 C -0.155 4.155 16 C -0.033 4.033 17 C -0.148 4.148 18 C -0.025 4.025 19 C -0.754 4.754 20 S 2.714 3.286 21 O -0.977 6.977 22 O -1.013 7.013 23 O -0.771 6.771 24 H 0.067 0.933 25 H 0.208 0.792 26 H 0.161 0.839 27 H 0.207 0.793 28 H 0.197 0.803 29 H 0.204 0.796 30 H 0.222 0.778 31 H 0.253 0.747 32 H 0.210 0.790 33 H 0.179 0.821 34 H 0.341 0.659 Dipole moment (debyes) X Y Z Total from point charges 0.641 -20.899 12.993 24.617 hybrid contribution 0.417 1.593 -0.674 1.779 sum 1.058 -19.307 12.318 22.926 Atomic orbital electron populations 1.69920 1.05994 1.26810 1.52284 1.25079 0.95831 0.99418 0.97859 0.85861 0.78585 0.80518 0.78871 1.21215 1.21219 1.18465 1.20466 0.89536 0.82763 1.50689 0.92115 1.85717 1.32199 1.10421 1.92643 1.22278 0.96946 0.88644 0.91929 0.90190 1.23544 1.08104 0.99048 0.74219 1.42572 1.14013 1.29873 1.12384 1.23155 0.90022 0.87835 0.99666 1.22277 1.03093 0.99538 0.90636 1.22748 0.90066 0.87369 1.03156 1.22462 1.00041 0.97373 0.94924 1.23793 0.93182 0.94774 0.90749 1.30658 1.17540 1.18789 1.08423 1.04014 0.75025 0.75506 0.74028 1.93779 1.75071 1.45713 1.83146 1.93572 1.40295 1.87494 1.79925 1.85407 1.77350 1.67812 1.46491 0.93273 0.79188 0.83868 0.79323 0.80312 0.79563 0.77813 0.74651 0.78956 0.82068 0.65868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.87 13.67 21.61 0.30 -29.57 16 2 C 0.02 0.50 5.49 84.83 0.47 0.97 16 3 Si 0.93 25.46 29.55 68.60 2.03 27.49 16 4 H -0.29 -8.57 7.11 99.48 0.71 -7.86 16 5 H -0.29 -8.09 7.11 99.48 0.71 -7.39 16 6 H -0.26 -6.16 7.11 99.48 0.71 -5.46 16 7 C -0.36 -8.34 6.38 67.91 0.43 -7.90 16 8 H 0.06 1.41 7.00 -2.91 -0.02 1.38 16 9 O -0.29 -3.66 8.77 -81.04 -0.71 -4.37 16 10 C 0.06 -0.26 2.58 30.59 0.08 -0.18 16 11 H 0.08 -0.41 7.80 -2.38 -0.02 -0.42 16 12 C 0.07 -1.35 5.20 86.38 0.45 -0.90 16 13 N -0.33 6.53 2.40 -526.04 -1.26 5.26 16 14 C 0.14 -2.07 9.62 84.68 0.81 -1.26 16 15 C -0.14 2.50 10.11 22.36 0.23 2.73 16 16 C -0.01 0.19 10.18 22.47 0.23 0.42 16 17 C -0.13 3.40 10.11 22.36 0.23 3.62 16 18 C 0.12 -2.99 10.19 84.68 0.86 -2.12 16 19 C -0.62 3.50 5.86 71.98 0.42 3.92 16 20 S 2.62 18.33 4.56 -56.49 -0.26 18.07 16 21 O -0.98 -20.13 15.19 -117.81 -1.79 -21.92 16 22 O -1.01 -12.14 18.09 -118.57 -2.15 -14.29 16 23 O -0.90 -0.65 13.27 -118.07 -1.57 -2.22 16 24 H 0.26 8.56 8.31 -92.71 -0.77 7.79 16 25 H 0.19 -5.84 7.95 -2.39 -0.02 -5.86 16 26 H 0.14 -2.87 7.95 -2.39 -0.02 -2.89 16 27 H 0.19 -2.27 7.96 -2.91 -0.02 -2.29 16 28 H 0.18 -3.45 8.06 -2.91 -0.02 -3.47 16 29 H 0.19 -5.08 8.06 -2.91 -0.02 -5.11 16 30 H 0.20 -6.47 8.06 -2.91 -0.02 -6.49 16 31 H 0.24 -8.06 7.96 -2.91 -0.02 -8.09 16 32 H 0.19 -3.32 8.14 -2.39 -0.02 -3.34 16 33 H 0.16 -1.13 8.14 -2.39 -0.02 -1.15 16 34 H 0.47 -2.76 9.03 -87.93 -0.79 -3.56 16 Total: 0.00 -75.57 306.98 -0.88 -76.45 By element: Atomic # 1 Polarization: -54.52 SS G_CDS: 0.32 Total: -54.19 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 4.21 Total: -0.71 kcal Atomic # 7 Polarization: -23.34 SS G_CDS: -0.97 Total: -24.31 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -6.21 Total: -42.80 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: 2.03 Total: 27.49 kcal Atomic # 16 Polarization: 18.33 SS G_CDS: -0.26 Total: 18.07 kcal Total: -75.57 -0.88 -76.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224382357.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.784 kcal (2) G-P(sol) polarization free energy of solvation -75.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds