Wall clock time and date at job start Tue Mar 31 2020 03:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37277 * 119.69502 * 2 1 4 4 C 1.35196 * 119.60808 * 180.02562 * 3 2 1 5 5 O 1.36211 * 120.47231 * 180.02562 * 4 3 2 6 6 C 1.42895 * 117.00547 * 6.23594 * 5 4 3 7 7 H 1.09002 * 109.47158 * 18.77847 * 6 5 4 8 8 C 1.50701 * 109.47599 * 138.77912 * 6 5 4 9 9 H 1.08002 * 119.99784 * 5.66460 * 8 6 5 10 10 C 1.37873 * 120.00044 * 185.66076 * 8 6 5 11 11 N 1.31514 * 120.00327 * 197.32763 * 10 8 6 12 12 Si 1.86804 * 120.00023 * 17.33168 * 10 8 6 13 13 H 1.48507 * 109.47058 * 180.02562 * 12 10 8 14 14 H 1.48499 * 109.46930 * 299.99605 * 12 10 8 15 15 H 1.48497 * 109.47452 * 59.99510 * 12 10 8 16 16 C 1.53000 * 109.47044 * 258.78130 * 6 5 4 17 17 Cl 1.80305 * 109.47116 * 64.40102 * 16 6 5 18 18 C 1.41943 * 119.04778 * 0.27885 * 4 3 2 19 19 O 1.21787 * 120.30276 * 179.72433 * 18 4 3 20 20 N 1.34828 * 119.39126 * 359.46237 * 18 4 3 21 21 C 1.46494 * 119.82755 * 180.25067 * 20 18 4 22 22 C 1.34529 * 119.69813 * 180.02562 * 2 1 3 23 23 O 1.21610 * 119.49831 * 359.97057 * 22 2 1 24 24 H 1.08996 * 109.47086 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47490 * 119.99997 * 1 2 3 26 26 H 1.09004 * 109.46739 * 239.99645 * 1 2 3 27 27 H 1.08010 * 120.19469 * 359.97438 * 3 2 1 28 28 H 0.97001 * 119.99545 * 354.95534 * 11 10 8 29 29 H 1.09000 * 109.47137 * 184.40069 * 16 6 5 30 30 H 1.08996 * 109.47569 * 304.40502 * 16 6 5 31 31 H 1.09001 * 109.47074 * 270.28770 * 21 20 18 32 32 H 1.09002 * 109.47504 * 30.28838 * 21 20 18 33 33 H 1.08997 * 109.47062 * 150.29197 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1450 1.1925 0.0000 4 6 3.4970 1.1904 -0.0005 5 8 4.1895 2.3634 0.0000 6 6 3.4296 3.5655 0.1394 7 1 2.4486 3.3294 0.5516 8 6 4.1499 4.5105 1.0664 9 1 5.1349 4.2616 1.4326 10 6 3.5513 5.6928 1.4468 11 7 4.2771 6.6620 1.9601 12 14 1.7093 5.9182 1.2331 13 1 1.3165 7.2671 1.7145 14 1 1.3575 5.7840 -0.2033 15 1 0.9896 4.8831 2.0178 16 6 3.2618 4.2245 -1.2312 17 17 2.2879 3.1479 -2.3005 18 6 4.1843 -0.0515 -0.0071 19 8 5.4018 -0.0800 -0.0128 20 7 3.4769 -1.1993 -0.0017 21 6 4.1765 -2.4864 -0.0028 22 6 2.1315 -1.1686 -0.0005 23 8 1.5087 -2.2131 -0.0004 24 1 -0.3633 1.0276 0.0005 25 1 -0.3634 -0.5138 -0.8899 26 1 -0.3633 -0.5139 0.8900 27 1 1.6032 2.1268 -0.0004 28 1 5.2198 6.5193 2.1390 29 1 2.7503 5.1799 -1.1147 30 1 4.2423 4.3893 -1.6777 31 1 4.3495 -2.8049 -1.0308 32 1 5.1322 -2.3810 0.5107 33 1 3.5683 -3.2309 0.5107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234189244.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:23 Heat of formation + Delta-G solvation = -88.310512 kcal Electronic energy + Delta-G solvation = -21605.595839 eV Core-core repulsion = 18079.541549 eV Total energy + Delta-G solvation = -3526.054290 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.46678 -40.58020 -39.90982 -37.87045 -36.81644 -36.43523 -35.39521 -32.64437 -31.43453 -29.19434 -27.84254 -26.82919 -25.30703 -24.37322 -22.73190 -20.76933 -19.66326 -19.47161 -18.38837 -18.29128 -17.44705 -16.68845 -16.53779 -16.25616 -15.89625 -15.53992 -15.41901 -15.30130 -14.76860 -14.68266 -14.40876 -13.87998 -13.79954 -13.41242 -13.25840 -13.04006 -12.71333 -12.35095 -12.17500 -12.02003 -11.81091 -11.57763 -11.55288 -11.18894 -10.99744 -10.91816 -10.58837 -9.08209 -8.80223 -6.63748 -0.14224 0.76369 0.79320 1.27253 1.43870 1.51618 1.66828 1.73118 2.25152 2.39619 2.44153 2.89155 3.25546 3.56493 3.88104 4.07004 4.09534 4.23580 4.31182 4.35095 4.37081 4.50821 4.53215 4.68770 4.80731 4.88640 4.94644 5.19653 5.40428 5.83915 6.00484 6.10681 6.28177 6.56502 6.79444 7.18691 8.42956 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.006336 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.114540 B = 4418.193045 C = 4795.159293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.514 5.514 3 C 0.073 3.927 4 C -0.058 4.058 5 O -0.300 6.300 6 C 0.194 3.806 7 H 0.056 0.944 8 C -0.622 4.622 9 H 0.024 0.976 10 C -0.003 4.003 11 N -0.910 5.910 12 Si 1.059 2.941 13 H -0.279 1.279 14 H -0.224 1.224 15 H -0.243 1.243 16 C -0.045 4.045 17 Cl -0.204 7.204 18 C 0.555 3.445 19 O -0.534 6.534 20 N -0.548 5.548 21 C 0.079 3.921 22 C 0.684 3.316 23 O -0.558 6.558 24 H 0.120 0.880 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.195 0.805 28 H 0.258 0.742 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.872 -11.624 -5.506 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.238 5.238 3 C -0.050 4.050 4 C -0.111 4.111 5 O -0.212 6.212 6 C 0.137 3.863 7 H 0.073 0.927 8 C -0.659 4.659 9 H 0.042 0.958 10 C -0.204 4.204 11 N -0.542 5.542 12 Si 0.876 3.124 13 H -0.204 1.204 14 H -0.148 1.148 15 H -0.167 1.167 16 C -0.108 4.108 17 Cl -0.178 7.178 18 C 0.351 3.649 19 O -0.411 6.411 20 N -0.293 5.293 21 C -0.061 4.061 22 C 0.388 3.612 23 O -0.434 6.434 24 H 0.138 0.862 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.212 0.788 28 H 0.068 0.932 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.643 -11.231 -5.430 17.761 hybrid contribution 2.172 -0.615 0.098 2.260 sum -10.470 -11.846 -5.332 16.685 Atomic orbital electron populations 1.22397 0.71939 1.06573 1.05163 1.44538 1.10518 1.02418 1.66318 1.22480 0.91824 0.91438 0.99222 1.19014 0.90380 0.88333 1.13331 1.86296 1.35444 1.11328 1.88178 1.20612 0.93335 0.80538 0.91794 0.92709 1.22004 1.04607 1.07204 1.32077 0.95790 1.27384 1.10365 0.90169 0.92505 1.70972 1.09168 1.31727 1.42345 0.84003 0.69162 0.78574 0.80704 1.20434 1.14807 1.16674 1.25960 0.97842 0.95729 0.91245 1.98654 1.75985 1.71573 1.71581 1.16686 0.87293 0.83586 0.77377 1.90852 1.13864 1.87303 1.49049 1.46191 1.06538 1.10102 1.66460 1.22118 0.98205 0.80673 1.05119 1.15924 0.81245 0.84675 0.79403 1.90974 1.65920 1.30254 1.56288 0.86189 0.89240 0.89130 0.78838 0.93226 0.86741 0.89395 0.89387 0.88991 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.05 127.77 1.28 2.49 16 2 N -0.51 -12.85 3.02 -679.80 -2.05 -14.90 16 3 C 0.07 2.14 7.85 83.14 0.65 2.79 16 4 C -0.06 -2.18 6.28 22.49 0.14 -2.04 16 5 O -0.30 -13.64 9.50 -80.79 -0.77 -14.41 16 6 C 0.19 8.24 1.71 29.85 0.05 8.30 16 7 H 0.06 2.07 4.06 -2.39 -0.01 2.06 16 8 C -0.62 -32.99 9.15 25.60 0.23 -32.76 16 9 H 0.02 1.48 8.06 -2.91 -0.02 1.46 16 10 C 0.00 -0.14 5.31 84.65 0.45 0.31 16 11 N -0.91 -52.04 13.70 21.45 0.29 -51.75 16 12 Si 1.06 39.90 26.31 68.60 1.80 41.71 16 13 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 14 H -0.22 -6.87 5.70 99.48 0.57 -6.31 16 15 H -0.24 -7.98 7.11 99.48 0.71 -7.27 16 16 C -0.05 -1.67 6.02 71.98 0.43 -1.24 16 17 Cl -0.20 -6.28 26.17 -2.72 -0.07 -6.36 16 18 C 0.56 21.03 7.46 85.15 0.63 21.67 16 19 O -0.53 -23.63 16.51 10.54 0.17 -23.46 16 20 N -0.55 -16.75 2.96 -806.09 -2.39 -19.13 16 21 C 0.08 1.84 10.12 127.77 1.29 3.13 16 22 C 0.68 19.61 8.12 179.19 1.45 21.07 16 23 O -0.56 -16.64 15.79 -4.06 -0.06 -16.70 16 24 H 0.12 1.19 7.76 -2.39 -0.02 1.17 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.20 5.10 4.77 -2.91 -0.01 5.09 16 28 H 0.26 15.30 8.73 -92.71 -0.81 14.49 16 29 H 0.11 4.06 4.83 -2.39 -0.01 4.05 16 30 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.09 2.17 7.43 -2.39 -0.02 2.16 16 33 H 0.11 2.17 7.38 -2.39 -0.02 2.15 16 Total: -1.00 -69.39 291.51 4.54 -64.85 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.98 Total: 16.45 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 6.63 Total: 23.71 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -4.15 Total: -85.79 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -0.66 Total: -54.57 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 1.80 Total: 41.71 kcal Atomic # 17 Polarization: -6.28 SS G_CDS: -0.07 Total: -6.36 kcal Total: -69.39 4.54 -64.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234189244.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.457 kcal (2) G-P(sol) polarization free energy of solvation -69.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds