Wall clock time and date at job start Tue Mar 31 2020 03:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47389 * 300.00011 * 3 2 1 6 6 H 1.48495 * 109.47216 * 60.00158 * 3 2 1 7 7 C 1.39037 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00043 * 180.02562 * 7 2 1 9 9 N 1.36885 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99851 * 180.02562 * 9 7 2 11 11 O 1.21605 * 120.00226 * 0.26927 * 10 9 7 12 12 C 1.47586 * 120.00060 * 179.97438 * 10 9 7 13 13 C 1.39721 * 120.17206 * 359.72185 * 12 10 9 14 14 C 1.37835 * 119.86982 * 179.71901 * 13 12 10 15 15 S 1.76205 * 119.88628 * 180.29653 * 14 13 12 16 16 N 1.65601 * 107.21872 * 270.25859 * 15 14 13 17 17 O 1.42100 * 106.40291 * 23.80158 * 15 14 13 18 18 O 1.42100 * 106.39936 * 156.71698 * 15 14 13 19 19 C 1.38471 * 120.22362 * 0.55696 * 14 13 12 20 20 C 1.38214 * 120.35257 * 359.71892 * 19 14 13 21 21 C 1.38301 * 120.12444 * 0.02562 * 20 19 14 22 22 F 1.35101 * 120.11288 * 179.97438 * 21 20 19 23 23 H 0.96996 * 119.99840 * 359.97438 * 1 2 3 24 24 H 0.96999 * 120.00106 * 0.02562 * 9 7 2 25 25 H 1.08004 * 120.06312 * 359.97438 * 13 12 10 26 26 H 0.96998 * 120.00121 * 0.02562 * 16 15 14 27 27 H 0.96998 * 119.99901 * 179.97438 * 16 15 14 28 28 H 1.08004 * 119.82408 * 179.69465 * 19 14 13 29 29 H 1.08000 * 119.93924 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.7077 1.3464 -0.0006 5 1 1.8890 2.3965 -1.2125 6 1 1.8890 2.3964 1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 3.0889 -1.2041 -0.0001 9 7 1.3245 -2.3895 -0.0016 10 6 1.9984 -3.5567 -0.0016 11 8 3.2144 -3.5568 0.0043 12 6 1.2605 -4.8349 -0.0022 13 6 -0.1367 -4.8391 0.0032 14 6 -0.8195 -6.0364 -0.0033 15 16 -2.5816 -6.0422 -0.0045 16 7 -3.0729 -6.0446 1.5770 17 8 -2.9866 -4.7936 -0.5487 18 8 -2.9783 -7.2930 -0.5498 19 6 -0.1256 -7.2346 -0.0034 20 6 1.2566 -7.2413 -0.0029 21 6 1.9564 -6.0484 -0.0017 22 9 3.3074 -6.0551 -0.0007 23 1 -0.4850 0.8400 0.0004 24 1 0.3545 -2.3895 -0.0024 25 1 -0.6806 -3.9060 0.0081 26 1 -2.4146 -6.0424 2.2894 27 1 -4.0190 -6.0474 1.7909 28 1 -0.6672 -8.1691 -0.0034 29 1 1.7911 -8.1797 -0.0025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256496642.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:26 Heat of formation + Delta-G solvation = -128.910878 kcal Electronic energy + Delta-G solvation = -20366.868165 eV Core-core repulsion = 16717.636712 eV Total energy + Delta-G solvation = -3649.231453 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.041 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.66253 -39.36956 -37.62440 -37.12654 -35.82191 -34.23266 -33.27206 -31.93794 -30.85101 -30.78984 -25.56644 -23.63771 -23.02277 -20.44700 -19.37371 -18.64235 -17.84015 -17.41182 -17.36972 -16.66323 -16.14042 -15.51045 -15.45373 -15.26149 -14.78246 -14.30072 -14.00907 -13.57554 -13.36367 -13.11259 -12.71017 -12.44865 -12.17652 -12.07956 -11.97413 -11.77288 -11.45545 -11.25976 -10.98884 -10.57949 -10.48725 -10.42055 -9.79382 -9.21926 -8.96063 -8.65796 -8.23622 -6.70075 -4.01158 0.32163 0.63064 0.96450 2.84486 3.07935 3.15609 3.20649 3.22747 3.62806 3.95166 4.15015 4.20551 4.38669 4.59958 4.75076 4.88502 5.12478 5.28920 5.53720 5.60910 5.74900 5.88086 5.89714 6.05228 6.25861 6.73297 6.90386 7.29795 7.78699 8.32664 8.90500 9.22271 9.78660 10.45562 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.005663 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.198718 B = 4943.092418 C = 6409.522341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.292 4.292 8 H 0.112 0.888 9 N -0.534 5.534 10 C 0.455 3.545 11 O -0.586 6.586 12 C -0.148 4.148 13 C 0.019 3.981 14 C -0.693 4.693 15 S 2.706 3.294 16 N -1.251 6.251 17 O -0.955 6.955 18 O -0.968 6.968 19 C 0.002 3.998 20 C -0.182 4.182 21 C 0.196 3.804 22 F -0.106 7.106 23 H 0.280 0.720 24 H 0.394 0.606 25 H 0.154 0.846 26 H 0.417 0.583 27 H 0.419 0.581 28 H 0.150 0.850 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.609 -12.366 3.874 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.422 4.422 8 H 0.130 0.870 9 N -0.167 5.167 10 C 0.243 3.757 11 O -0.472 6.472 12 C -0.154 4.154 13 C -0.002 4.002 14 C -0.781 4.781 15 S 2.795 3.205 16 N -0.925 5.925 17 O -0.945 6.945 18 O -0.957 6.957 19 C -0.018 4.018 20 C -0.202 4.202 21 C 0.174 3.826 22 F -0.084 7.084 23 H 0.090 0.910 24 H 0.230 0.770 25 H 0.172 0.828 26 H 0.244 0.756 27 H 0.249 0.751 28 H 0.167 0.833 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.378 -12.126 2.922 14.009 hybrid contribution 0.605 0.811 0.688 1.224 sum -5.773 -11.314 3.611 13.205 Atomic orbital electron populations 1.69604 1.06195 1.29199 1.46579 1.25480 0.95760 1.00369 0.96412 0.85666 0.79789 0.80128 0.78063 1.18850 1.20305 1.20333 1.19966 0.93951 0.81843 1.46412 0.87008 1.41948 1.09585 1.04771 1.60428 1.17321 0.87545 0.82746 0.88118 1.90682 1.12521 1.86457 1.57561 1.20651 0.93859 0.94916 1.05969 1.21108 0.93063 0.97277 0.88742 1.30395 1.25850 0.99300 1.22506 1.01435 0.72780 0.74044 0.72287 1.53056 1.17343 1.95389 1.26724 1.93651 1.80407 1.44082 1.76318 1.93584 1.80950 1.44616 1.76563 1.20740 0.93526 0.96627 0.90947 1.21164 0.94834 0.97166 1.07047 1.17981 0.77631 0.93223 0.93775 1.91609 1.27725 1.97191 1.91887 0.91031 0.77040 0.82846 0.75559 0.75109 0.83267 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.80 13.05 55.50 0.72 -22.07 15 2 C 0.02 0.63 5.50 -17.45 -0.10 0.54 15 3 Si 0.94 20.01 29.55 -169.99 -5.02 14.99 15 4 H -0.26 -5.66 7.11 56.52 0.40 -5.26 15 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 6 H -0.28 -5.80 7.11 56.52 0.40 -5.39 15 7 C -0.29 -7.89 9.68 -15.00 -0.15 -8.04 15 8 H 0.11 3.15 7.15 -52.49 -0.38 2.78 15 9 N -0.53 -13.46 5.23 -11.91 -0.06 -13.52 15 10 C 0.45 11.15 7.72 -12.45 -0.10 11.05 15 11 O -0.59 -16.34 14.91 5.27 0.08 -16.26 15 12 C -0.15 -2.89 5.88 -104.91 -0.62 -3.51 15 13 C 0.02 0.31 9.01 -39.18 -0.35 -0.04 15 14 C -0.69 -9.16 5.94 -39.64 -0.24 -9.39 15 15 S 2.71 32.02 6.28 -107.50 -0.67 31.35 15 16 N -1.25 -9.56 9.55 60.35 0.58 -8.99 15 17 O -0.96 -15.22 17.28 -57.17 -0.99 -16.21 15 18 O -0.97 -13.26 17.27 -57.17 -0.99 -14.25 15 19 C 0.00 0.02 9.51 -39.50 -0.38 -0.35 15 20 C -0.18 -2.36 10.01 -39.57 -0.40 -2.76 15 21 C 0.20 3.42 7.29 -38.94 -0.28 3.14 15 22 F -0.11 -2.08 15.55 2.25 0.04 -2.05 15 23 H 0.28 6.78 8.31 -40.82 -0.34 6.44 15 24 H 0.39 9.37 5.93 -40.82 -0.24 9.13 15 25 H 0.15 2.55 5.96 -52.48 -0.31 2.23 15 26 H 0.42 2.38 8.92 -34.47 -0.31 2.07 15 27 H 0.42 2.40 8.96 -34.47 -0.31 2.09 15 28 H 0.15 1.31 7.60 -52.48 -0.40 0.91 15 29 H 0.15 1.42 8.06 -52.49 -0.42 0.99 15 LS Contribution 281.40 15.07 4.24 4.24 Total: -1.00 -35.38 281.40 -6.18 -41.56 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -1.50 Total: 10.56 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -2.60 Total: -9.36 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 1.24 Total: -44.58 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -1.90 Total: -46.72 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 32.02 SS G_CDS: -0.67 Total: 31.35 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -35.38 -6.18 -41.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256496642.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.346 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds