Wall clock time and date at job start Tue Mar 31 2020 03:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31375 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47389 * 300.00011 * 3 2 1 6 6 H 1.48495 * 109.47216 * 60.00158 * 3 2 1 7 7 C 1.39037 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00043 * 180.02562 * 7 2 1 9 9 N 1.36885 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99851 * 180.02562 * 9 7 2 11 11 O 1.21605 * 120.00226 * 0.26927 * 10 9 7 12 12 C 1.47586 * 120.00060 * 179.97438 * 10 9 7 13 13 C 1.39721 * 120.17206 * 359.72185 * 12 10 9 14 14 C 1.37835 * 119.86982 * 179.71901 * 13 12 10 15 15 S 1.76205 * 119.88628 * 180.29653 * 14 13 12 16 16 N 1.65601 * 107.21872 * 270.25859 * 15 14 13 17 17 O 1.42100 * 106.40291 * 23.80158 * 15 14 13 18 18 O 1.42100 * 106.39936 * 156.71698 * 15 14 13 19 19 C 1.38471 * 120.22362 * 0.55696 * 14 13 12 20 20 C 1.38214 * 120.35257 * 359.71892 * 19 14 13 21 21 C 1.38301 * 120.12444 * 0.02562 * 20 19 14 22 22 F 1.35101 * 120.11288 * 179.97438 * 21 20 19 23 23 H 0.96996 * 119.99840 * 359.97438 * 1 2 3 24 24 H 0.96999 * 120.00106 * 0.02562 * 9 7 2 25 25 H 1.08004 * 120.06312 * 359.97438 * 13 12 10 26 26 H 0.96998 * 120.00121 * 0.02562 * 16 15 14 27 27 H 0.96998 * 119.99901 * 179.97438 * 16 15 14 28 28 H 1.08004 * 119.82408 * 179.69465 * 19 14 13 29 29 H 1.08000 * 119.93924 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.7077 1.3464 -0.0006 5 1 1.8890 2.3965 -1.2125 6 1 1.8890 2.3964 1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 3.0889 -1.2041 -0.0001 9 7 1.3245 -2.3895 -0.0016 10 6 1.9984 -3.5567 -0.0016 11 8 3.2144 -3.5568 0.0043 12 6 1.2605 -4.8349 -0.0022 13 6 -0.1367 -4.8391 0.0032 14 6 -0.8195 -6.0364 -0.0033 15 16 -2.5816 -6.0422 -0.0045 16 7 -3.0729 -6.0446 1.5770 17 8 -2.9866 -4.7936 -0.5487 18 8 -2.9783 -7.2930 -0.5498 19 6 -0.1256 -7.2346 -0.0034 20 6 1.2566 -7.2413 -0.0029 21 6 1.9564 -6.0484 -0.0017 22 9 3.3074 -6.0551 -0.0007 23 1 -0.4850 0.8400 0.0004 24 1 0.3545 -2.3895 -0.0024 25 1 -0.6806 -3.9060 0.0081 26 1 -2.4146 -6.0424 2.2894 27 1 -4.0190 -6.0474 1.7909 28 1 -0.6672 -8.1691 -0.0034 29 1 1.7911 -8.1797 -0.0025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256496642.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:26 Heat of formation + Delta-G solvation = -159.426388 kcal Electronic energy + Delta-G solvation = -20368.191416 eV Core-core repulsion = 16717.636712 eV Total energy + Delta-G solvation = -3650.554704 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.041 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.09800 -40.91372 -39.26780 -38.22570 -36.91975 -36.21258 -34.00966 -33.72067 -32.35380 -32.06112 -27.42075 -25.08100 -24.29305 -21.98007 -20.61547 -20.25343 -19.21318 -18.67507 -18.32956 -18.04478 -17.47702 -16.90548 -16.82984 -16.51770 -16.34898 -15.81262 -15.59298 -15.47106 -14.59205 -14.41927 -14.35347 -13.72884 -13.63652 -13.20858 -13.17433 -13.10982 -13.00117 -12.78966 -12.49771 -12.15671 -12.10456 -11.68257 -11.30484 -10.64345 -10.41006 -10.38154 -10.18013 -8.62627 -6.08512 -0.75477 -0.54295 -0.29442 1.32517 1.39481 1.54446 1.65946 2.16723 2.20776 2.38034 2.71293 2.81058 2.96960 3.15141 3.32077 3.55870 3.72257 4.11724 4.15652 4.35160 4.53341 4.69316 4.83250 4.86726 5.28186 5.32851 5.49951 5.81261 6.37619 6.39099 6.92873 7.28592 7.85220 8.54179 Molecular weight = 288.04amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.005663 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.198718 B = 4943.092418 C = 6409.522341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.006 4.006 3 Si 1.002 2.998 4 H -0.272 1.272 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.339 4.339 8 H 0.086 0.914 9 N -0.545 5.545 10 C 0.454 3.546 11 O -0.627 6.627 12 C -0.183 4.183 13 C 0.022 3.978 14 C -0.686 4.686 15 S 2.738 3.262 16 N -1.232 6.232 17 O -0.997 6.997 18 O -0.977 6.977 19 C 0.031 3.969 20 C -0.161 4.161 21 C 0.178 3.822 22 F -0.126 7.126 23 H 0.286 0.714 24 H 0.398 0.602 25 H 0.145 0.855 26 H 0.430 0.570 27 H 0.431 0.569 28 H 0.198 0.802 29 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.243 -14.791 4.409 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.209 4.209 3 Si 0.824 3.176 4 H -0.196 1.196 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.468 4.468 8 H 0.104 0.896 9 N -0.179 5.179 10 C 0.243 3.757 11 O -0.517 6.517 12 C -0.188 4.188 13 C 0.001 3.999 14 C -0.773 4.773 15 S 2.824 3.176 16 N -0.914 5.914 17 O -0.987 6.987 18 O -0.967 6.967 19 C 0.012 3.988 20 C -0.181 4.181 21 C 0.157 3.843 22 F -0.104 7.104 23 H 0.096 0.904 24 H 0.234 0.766 25 H 0.162 0.838 26 H 0.260 0.740 27 H 0.265 0.735 28 H 0.215 0.785 29 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.039 -14.576 3.470 17.004 hybrid contribution 1.000 1.244 0.550 1.688 sum -7.039 -13.332 4.020 15.603 Atomic orbital electron populations 1.69656 1.07090 1.30282 1.47229 1.26252 0.96612 1.02838 0.95157 0.84750 0.77975 0.76117 0.78755 1.19607 1.19225 1.18900 1.19860 0.93182 0.83482 1.50253 0.89572 1.41916 1.09630 1.04751 1.61652 1.18147 0.87408 0.84267 0.85837 1.90624 1.14657 1.87627 1.58777 1.20317 0.95007 0.93227 1.10283 1.20994 0.91750 0.98524 0.88643 1.30647 1.26734 0.98658 1.21213 1.00430 0.71488 0.72877 0.72758 1.52621 1.18512 1.94904 1.25318 1.93615 1.80793 1.46202 1.78059 1.93576 1.80660 1.44803 1.77621 1.21412 0.93186 0.97657 0.86566 1.21619 0.95234 0.96810 1.04390 1.18426 0.77087 0.94171 0.94633 1.91562 1.29246 1.97300 1.92267 0.90416 0.76594 0.83784 0.74021 0.73515 0.78526 0.79257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.17 13.05 21.68 0.28 -47.89 15 2 C -0.01 -0.33 5.50 84.95 0.47 0.14 15 3 Si 1.00 42.05 29.55 68.60 2.03 44.08 15 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 15 5 H -0.27 -10.71 7.11 99.48 0.71 -10.01 15 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 7 C -0.34 -19.42 9.68 84.10 0.81 -18.60 15 8 H 0.09 5.24 7.15 -2.91 -0.02 5.22 15 9 N -0.55 -29.18 5.23 -309.85 -1.62 -30.80 15 10 C 0.45 23.54 7.72 86.71 0.67 24.21 15 11 O -0.63 -37.18 14.91 -4.05 -0.06 -37.24 15 12 C -0.18 -7.27 5.88 -20.05 -0.12 -7.38 15 13 C 0.02 0.70 9.01 22.53 0.20 0.90 15 14 C -0.69 -16.10 5.94 22.23 0.13 -15.96 15 15 S 2.74 56.70 6.28 -56.49 -0.35 56.35 15 16 N -1.23 -14.59 9.55 37.02 0.35 -14.24 15 17 O -1.00 -30.50 17.28 -128.00 -2.21 -32.71 15 18 O -0.98 -22.78 17.27 -128.00 -2.21 -24.99 15 19 C 0.03 0.57 9.51 22.32 0.21 0.78 15 20 C -0.16 -3.49 10.01 22.28 0.22 -3.27 15 21 C 0.18 6.06 7.29 22.68 0.17 6.22 15 22 F -0.13 -4.97 15.55 44.97 0.70 -4.27 15 23 H 0.29 14.03 8.31 -92.71 -0.77 13.26 15 24 H 0.40 20.07 5.93 -92.71 -0.55 19.52 15 25 H 0.14 4.93 5.96 -2.91 -0.02 4.91 15 26 H 0.43 3.30 8.92 -96.75 -0.86 2.44 15 27 H 0.43 3.45 8.96 -96.75 -0.87 2.58 15 28 H 0.20 1.96 7.60 -2.91 -0.02 1.94 15 29 H 0.19 2.53 8.06 -2.91 -0.02 2.50 15 Total: -1.00 -81.57 281.40 -1.34 -82.91 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -1.01 Total: 21.76 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 2.77 Total: -12.96 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -0.98 Total: -92.93 kcal Atomic # 8 Polarization: -90.46 SS G_CDS: -4.48 Total: -94.94 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.70 Total: -4.27 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 56.70 SS G_CDS: -0.35 Total: 56.35 kcal Total: -81.57 -1.34 -82.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256496642.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.520 kcal (2) G-P(sol) polarization free energy of solvation -81.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds