Wall clock time and date at job start Tue Mar 31 2020 03:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00278 * 2 1 4 4 H 1.48504 * 109.46807 * 270.00024 * 3 2 1 5 5 H 1.48501 * 109.47107 * 29.99345 * 3 2 1 6 6 H 1.48500 * 109.47359 * 149.99739 * 3 2 1 7 7 C 1.38794 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00662 * 0.02562 * 7 2 1 9 9 S 1.76209 * 120.00115 * 179.97438 * 7 2 1 10 10 C 1.80995 * 100.00202 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.20824 * 119.99704 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99708 * 179.97438 * 11 10 9 14 14 C 1.45204 * 116.99576 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46916 * 180.02562 * 14 13 11 16 16 N 1.46504 * 109.47172 * 64.99998 * 15 14 13 17 17 C 1.34771 * 124.17359 * 89.99722 * 16 15 14 18 18 O 1.21225 * 127.16028 * 0.06992 * 17 16 15 19 19 C 1.51585 * 105.68254 * 180.02562 * 17 16 15 20 20 N 1.47317 * 103.59313 * 359.97438 * 19 17 16 21 21 C 1.33785 * 124.17976 * 270.30611 * 16 15 14 22 22 O 1.21542 * 123.77022 * 359.97438 * 21 16 15 23 23 H 0.97003 * 119.99881 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47059 * 59.99971 * 10 9 7 25 25 H 1.09000 * 109.46975 * 300.00279 * 10 9 7 26 26 H 1.09000 * 109.46913 * 60.00427 * 14 13 11 27 27 H 1.09001 * 109.47126 * 300.00385 * 14 13 11 28 28 H 1.09000 * 109.47340 * 305.00033 * 15 14 13 29 29 H 1.08998 * 109.46969 * 184.99686 * 15 14 13 30 30 H 1.08998 * 110.59926 * 241.47169 * 19 17 16 31 31 H 1.09003 * 110.73128 * 118.58762 * 19 17 16 32 32 H 0.97001 * 126.68790 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0001 11 6 5.5730 -3.2326 -0.0010 12 8 6.3410 -2.2999 -0.0015 13 8 6.0436 -4.4897 -0.0005 14 6 7.4864 -4.6534 -0.0011 15 6 7.8305 -6.1442 -0.0011 16 7 7.3710 -6.7515 -1.2526 17 6 8.1180 -6.8380 -2.3710 18 8 9.2541 -6.4442 -2.5251 19 6 7.2424 -7.5314 -3.3959 20 7 5.9861 -7.7787 -2.6674 21 6 6.1560 -7.2833 -1.4283 22 8 5.3026 -7.3188 -0.5636 23 1 -0.4850 0.8401 -0.0004 24 1 3.6432 -3.4318 -0.8896 25 1 3.6439 -3.4314 0.8904 26 1 7.9057 -4.1833 0.8884 27 1 7.9049 -4.1843 -0.8915 28 1 7.3382 -6.6307 0.8410 29 1 8.9098 -6.2679 0.0880 30 1 7.6935 -8.4719 -3.7121 31 1 7.0670 -6.8837 -4.2549 32 1 5.1899 -8.2101 -3.0150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317887275.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:25 Heat of formation + Delta-G solvation = -121.805398 kcal Electronic energy + Delta-G solvation = -20264.290870 eV Core-core repulsion = 16738.827840 eV Total energy + Delta-G solvation = -3525.463031 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.58520 -40.10584 -38.84410 -36.61182 -36.30808 -35.04532 -32.48334 -30.91526 -29.40740 -27.97016 -25.68137 -24.25767 -23.17040 -21.31066 -20.53056 -18.36413 -17.97613 -17.56868 -17.23227 -17.05626 -16.40232 -15.93557 -15.60165 -15.42393 -14.99702 -14.45850 -14.37922 -14.15014 -14.02608 -13.68594 -13.09983 -13.05352 -12.82171 -12.22239 -11.93798 -11.32234 -11.23839 -11.04695 -10.73689 -10.61826 -10.52539 -10.26910 -10.04417 -9.86929 -9.80158 -9.04686 -8.60552 -7.01327 -6.32442 -4.06631 1.29919 1.85347 2.39706 2.53357 2.77165 2.81480 3.11301 3.29620 3.46073 3.52851 3.64702 4.28649 4.37699 4.47281 4.58946 4.67238 4.73019 4.85647 4.97157 5.06326 5.15933 5.19982 5.46263 5.52155 5.69144 6.00309 6.46914 6.54076 6.73852 7.00119 7.88517 7.90571 8.03798 8.39832 9.12630 10.76696 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.003633 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.478124 B = 7704.996031 C = 8102.832054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.098 3.902 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.522 4.522 8 H 0.092 0.908 9 S -0.141 6.141 10 C -0.097 4.097 11 C 0.478 3.522 12 O -0.491 6.491 13 O -0.347 6.347 14 C 0.046 3.954 15 C 0.123 3.877 16 N -0.575 5.575 17 C 0.520 3.480 18 O -0.472 6.472 19 C 0.063 3.937 20 N -0.732 5.732 21 C 0.700 3.300 22 O -0.520 6.520 23 H 0.272 0.728 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.152 -17.888 -5.585 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.111 4.111 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.669 4.669 8 H 0.110 0.890 9 S 0.085 5.915 10 C -0.245 4.245 11 C 0.320 3.680 12 O -0.378 6.378 13 O -0.264 6.264 14 C -0.030 4.030 15 C 0.002 3.998 16 N -0.322 5.322 17 C 0.307 3.693 18 O -0.342 6.342 19 C -0.065 4.065 20 N -0.398 5.398 21 C 0.400 3.600 22 O -0.391 6.391 23 H 0.082 0.918 24 H 0.126 0.874 25 H 0.130 0.870 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 17.173 -16.408 -5.090 24.291 hybrid contribution -0.989 -0.358 -0.286 1.090 sum 16.185 -16.766 -5.377 23.916 Atomic orbital electron populations 1.69933 1.05878 1.27845 1.47700 1.24687 0.94447 0.98904 0.93099 0.86749 0.81875 0.83333 0.79961 1.19152 1.19775 1.15964 1.22270 0.87669 0.97785 1.59199 0.89043 1.84763 1.10137 0.99023 1.97569 1.22985 0.89833 1.04270 1.07407 1.23302 0.92047 0.80362 0.72288 1.90666 1.58896 1.43755 1.44438 1.86640 1.24239 1.30904 1.84642 1.23388 0.79584 0.96018 1.03967 1.21819 1.01551 0.91650 0.84786 1.46351 1.15465 1.55656 1.14767 1.20968 0.86460 0.78116 0.83741 1.90833 1.15684 1.47116 1.80564 1.22441 0.84623 1.03247 0.96165 1.45427 1.17537 1.64615 1.12202 1.15837 0.82012 0.78336 0.83801 1.91077 1.43472 1.59921 1.44607 0.91827 0.87391 0.87048 0.89076 0.90706 0.87106 0.86454 0.85939 0.85873 0.71338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.39 13.97 55.49 0.78 -25.62 16 2 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 3 Si 0.86 21.56 27.74 -169.99 -4.71 16.84 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 7 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 8 H 0.09 2.76 8.03 -52.49 -0.42 2.34 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.57 16 10 C -0.10 -1.98 6.27 36.01 0.23 -1.76 16 11 C 0.48 9.03 7.98 36.01 0.29 9.32 16 12 O -0.49 -10.36 15.61 -18.75 -0.29 -10.66 16 13 O -0.35 -5.49 9.58 -39.57 -0.38 -5.87 16 14 C 0.05 0.55 5.81 37.16 0.22 0.76 16 15 C 0.12 1.11 6.10 -4.04 -0.02 1.08 16 16 N -0.58 -5.61 2.58 -120.73 -0.31 -5.92 16 17 C 0.52 4.44 8.32 -10.55 -0.09 4.35 16 18 O -0.47 -5.23 17.76 5.60 0.10 -5.13 16 19 C 0.06 0.29 7.97 -4.31 -0.03 0.26 16 20 N -0.73 -4.85 6.58 -65.73 -0.43 -5.28 16 21 C 0.70 7.65 8.30 -88.02 -0.73 6.92 16 22 O -0.52 -7.82 17.20 5.33 0.09 -7.73 16 23 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.11 2.10 8.14 -51.91 -0.42 1.68 16 25 H 0.11 2.17 8.14 -51.92 -0.42 1.75 16 26 H 0.09 0.98 8.13 -51.93 -0.42 0.56 16 27 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 28 H 0.11 0.97 7.87 -51.93 -0.41 0.56 16 29 H 0.12 0.75 8.00 -51.93 -0.42 0.34 16 30 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.44 2.00 8.96 -40.82 -0.37 1.64 16 LS Contribution 306.81 15.07 4.62 4.62 Total: -1.00 -37.17 306.81 -5.77 -42.94 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -3.30 Total: -1.58 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 0.07 Total: 8.95 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.03 Total: -36.82 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.48 Total: -29.39 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -37.17 -5.77 -42.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317887275.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.866 kcal (2) G-P(sol) polarization free energy of solvation -37.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds