Wall clock time and date at job start Tue Mar 31 2020 03:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00278 * 2 1 4 4 H 1.48504 * 109.46807 * 270.00024 * 3 2 1 5 5 H 1.48501 * 109.47107 * 29.99345 * 3 2 1 6 6 H 1.48500 * 109.47359 * 149.99739 * 3 2 1 7 7 C 1.38794 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00662 * 0.02562 * 7 2 1 9 9 S 1.76209 * 120.00115 * 179.97438 * 7 2 1 10 10 C 1.80995 * 100.00202 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47163 * 179.97438 * 10 9 7 12 12 O 1.20824 * 119.99704 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99708 * 179.97438 * 11 10 9 14 14 C 1.45204 * 116.99576 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46916 * 180.02562 * 14 13 11 16 16 N 1.46504 * 109.47172 * 64.99998 * 15 14 13 17 17 C 1.34771 * 124.17359 * 89.99722 * 16 15 14 18 18 O 1.21225 * 127.16028 * 0.06992 * 17 16 15 19 19 C 1.51585 * 105.68254 * 180.02562 * 17 16 15 20 20 N 1.47317 * 103.59313 * 359.97438 * 19 17 16 21 21 C 1.33785 * 124.17976 * 270.30611 * 16 15 14 22 22 O 1.21542 * 123.77022 * 359.97438 * 21 16 15 23 23 H 0.97003 * 119.99881 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47059 * 59.99971 * 10 9 7 25 25 H 1.09000 * 109.46975 * 300.00279 * 10 9 7 26 26 H 1.09000 * 109.46913 * 60.00427 * 14 13 11 27 27 H 1.09001 * 109.47126 * 300.00385 * 14 13 11 28 28 H 1.09000 * 109.47340 * 305.00033 * 15 14 13 29 29 H 1.08998 * 109.46969 * 184.99686 * 15 14 13 30 30 H 1.08998 * 110.59926 * 241.47169 * 19 17 16 31 31 H 1.09003 * 110.73128 * 118.58762 * 19 17 16 32 32 H 0.97001 * 126.68790 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0001 11 6 5.5730 -3.2326 -0.0010 12 8 6.3410 -2.2999 -0.0015 13 8 6.0436 -4.4897 -0.0005 14 6 7.4864 -4.6534 -0.0011 15 6 7.8305 -6.1442 -0.0011 16 7 7.3710 -6.7515 -1.2526 17 6 8.1180 -6.8380 -2.3710 18 8 9.2541 -6.4442 -2.5251 19 6 7.2424 -7.5314 -3.3959 20 7 5.9861 -7.7787 -2.6674 21 6 6.1560 -7.2833 -1.4283 22 8 5.3026 -7.3188 -0.5636 23 1 -0.4850 0.8401 -0.0004 24 1 3.6432 -3.4318 -0.8896 25 1 3.6439 -3.4314 0.8904 26 1 7.9057 -4.1833 0.8884 27 1 7.9049 -4.1843 -0.8915 28 1 7.3382 -6.6307 0.8410 29 1 8.9098 -6.2679 0.0880 30 1 7.6935 -8.4719 -3.7121 31 1 7.0670 -6.8837 -4.2549 32 1 5.1899 -8.2101 -3.0150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317887275.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:25 Heat of formation + Delta-G solvation = -150.279732 kcal Electronic energy + Delta-G solvation = -20265.525610 eV Core-core repulsion = 16738.827840 eV Total energy + Delta-G solvation = -3526.697771 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.29232 -41.52816 -39.62622 -37.90016 -37.12653 -35.87433 -34.71365 -32.09059 -30.70464 -28.54401 -27.91805 -25.17852 -23.85464 -22.65506 -21.33336 -19.98727 -19.12451 -18.72426 -18.31928 -17.90574 -17.49468 -17.27301 -17.03055 -16.49689 -16.24149 -16.00247 -15.26297 -15.20976 -14.95614 -14.82972 -14.71697 -14.21131 -13.85360 -13.65563 -13.38382 -13.03978 -12.97176 -12.78204 -12.15203 -11.92045 -11.76321 -11.71160 -11.30627 -11.20095 -10.95990 -10.67064 -10.37664 -9.09798 -8.54300 -6.28829 0.63139 0.73308 1.01429 1.18248 1.30689 1.35089 1.48504 1.79071 2.00646 2.22350 2.31620 2.61348 2.83730 3.07707 3.52863 3.70005 3.80113 3.99829 4.05446 4.18067 4.32439 4.35122 4.36969 4.47806 4.61128 4.77119 5.16687 5.67795 5.89219 6.04891 6.09250 6.36597 6.57752 6.89170 7.16139 8.58358 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.003633 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.478124 B = 7704.996031 C = 8102.832054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.049 3.951 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.234 1.234 7 C -0.535 4.535 8 H 0.062 0.938 9 S -0.156 6.156 10 C -0.089 4.089 11 C 0.490 3.510 12 O -0.516 6.516 13 O -0.344 6.344 14 C 0.040 3.960 15 C 0.124 3.876 16 N -0.581 5.581 17 C 0.516 3.484 18 O -0.500 6.500 19 C 0.071 3.929 20 N -0.716 5.716 21 C 0.692 3.308 22 O -0.571 6.571 23 H 0.279 0.721 24 H 0.117 0.883 25 H 0.121 0.879 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.147 0.853 30 H 0.163 0.837 31 H 0.149 0.851 32 H 0.452 0.548 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.860 -18.548 -6.572 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.157 4.157 3 Si 0.736 3.264 4 H -0.184 1.184 5 H -0.181 1.181 6 H -0.158 1.158 7 C -0.683 4.683 8 H 0.080 0.920 9 S 0.071 5.929 10 C -0.237 4.237 11 C 0.333 3.667 12 O -0.404 6.404 13 O -0.261 6.261 14 C -0.034 4.034 15 C 0.003 3.997 16 N -0.328 5.328 17 C 0.306 3.694 18 O -0.372 6.372 19 C -0.055 4.055 20 N -0.382 5.382 21 C 0.392 3.608 22 O -0.446 6.446 23 H 0.088 0.912 24 H 0.136 0.864 25 H 0.139 0.861 26 H 0.123 0.877 27 H 0.087 0.913 28 H 0.131 0.869 29 H 0.165 0.835 30 H 0.180 0.820 31 H 0.166 0.834 32 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 18.889 -17.112 -6.122 26.212 hybrid contribution -1.452 -0.343 -0.020 1.493 sum 17.436 -17.456 -6.141 25.425 Atomic orbital electron populations 1.70013 1.07387 1.29230 1.48571 1.25563 0.95282 1.02299 0.92580 0.85866 0.80710 0.79368 0.80415 1.18412 1.18096 1.15829 1.22410 0.89827 0.96924 1.59094 0.91979 1.84543 1.07073 1.03643 1.97677 1.22897 0.91790 1.00637 1.08420 1.22799 0.91024 0.81074 0.71844 1.90657 1.59235 1.44693 1.45846 1.86625 1.26960 1.28683 1.83797 1.23766 0.76954 0.98290 1.04405 1.21931 1.03206 0.89490 0.85050 1.46474 1.15430 1.55463 1.15414 1.21571 0.86304 0.77573 0.83973 1.90826 1.16948 1.48429 1.80976 1.22720 0.82681 1.05128 0.94964 1.45443 1.18678 1.63142 1.10900 1.16097 0.81787 0.78406 0.84501 1.91041 1.44982 1.62156 1.46434 0.91165 0.86441 0.86134 0.87742 0.91251 0.86925 0.83541 0.82006 0.83388 0.70103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.57 13.97 21.65 0.30 -55.27 16 2 C 0.05 2.84 5.50 84.86 0.47 3.31 16 3 Si 0.92 44.19 27.74 68.60 1.90 46.09 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.23 -11.21 6.74 99.48 0.67 -10.54 16 7 C -0.54 -31.30 10.04 67.95 0.68 -30.62 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.16 -7.84 18.55 -56.49 -1.05 -8.89 16 10 C -0.09 -3.62 6.27 71.24 0.45 -3.17 16 11 C 0.49 18.11 7.98 71.24 0.57 18.68 16 12 O -0.52 -21.32 15.61 21.97 0.34 -20.98 16 13 O -0.34 -10.58 9.58 -51.15 -0.49 -11.07 16 14 C 0.04 0.91 5.81 71.98 0.42 1.33 16 15 C 0.12 2.05 6.10 86.38 0.53 2.58 16 16 N -0.58 -10.37 2.58 -773.13 -1.99 -12.36 16 17 C 0.52 7.63 8.32 87.94 0.73 8.36 16 18 O -0.50 -10.11 17.76 -2.86 -0.05 -10.16 16 19 C 0.07 0.40 7.97 85.76 0.68 1.09 16 20 N -0.72 -7.75 6.58 -480.29 -3.16 -10.92 16 21 C 0.69 14.22 8.30 179.44 1.49 15.71 16 22 O -0.57 -17.05 17.20 -3.85 -0.07 -17.11 16 23 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 24 H 0.12 4.54 8.14 -2.39 -0.02 4.52 16 25 H 0.12 4.68 8.14 -2.40 -0.02 4.66 16 26 H 0.10 2.09 8.13 -2.39 -0.02 2.07 16 27 H 0.07 1.67 8.13 -2.39 -0.02 1.65 16 28 H 0.11 1.85 7.87 -2.39 -0.02 1.83 16 29 H 0.15 1.56 8.00 -2.39 -0.02 1.54 16 30 H 0.16 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.15 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.45 3.04 8.96 -92.71 -0.83 2.21 16 Total: -1.00 -81.18 306.81 2.06 -79.12 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.30 Total: 4.28 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 6.01 Total: 17.27 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -4.85 Total: -78.54 kcal Atomic # 8 Polarization: -59.06 SS G_CDS: -0.26 Total: -59.32 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.90 Total: 46.09 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.05 Total: -8.89 kcal Total: -81.18 2.06 -79.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317887275.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.159 kcal (2) G-P(sol) polarization free energy of solvation -81.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds