Wall clock time and date at job start Tue Mar 31 2020 02:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46954 * 110.99552 * 2 1 4 4 C 1.53055 * 109.35912 * 183.19067 * 3 2 1 5 5 N 1.46953 * 109.36543 * 301.59459 * 4 3 2 6 6 C 1.46896 * 111.00037 * 183.19500 * 5 4 3 7 7 C 1.46957 * 110.87979 * 59.32162 * 5 4 3 8 8 H 1.09001 * 109.48408 * 60.66889 * 7 5 4 9 9 C 1.52998 * 109.49026 * 180.71010 * 7 5 4 10 10 N 1.46503 * 109.47013 * 54.37967 * 9 7 5 11 11 C 1.34771 * 119.99990 * 184.71040 * 10 9 7 12 12 O 1.21280 * 119.99945 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99811 * 180.02562 * 11 10 9 14 14 S 1.81007 * 109.47164 * 179.97438 * 13 11 10 15 15 C 1.76197 * 100.00043 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99973 * 0.02562 * 15 14 13 17 17 C 1.38804 * 119.99648 * 180.02562 * 15 14 13 18 18 N 1.31624 * 120.00309 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99569 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47433 * 89.99665 * 19 17 15 21 21 H 1.48504 * 109.46810 * 209.99829 * 19 17 15 22 22 H 1.48499 * 109.47462 * 329.99292 * 19 17 15 23 23 C 1.46954 * 110.99890 * 123.79813 * 2 1 3 24 24 H 1.08993 * 109.47489 * 296.19880 * 1 2 3 25 25 H 1.09000 * 109.47012 * 56.20600 * 1 2 3 26 26 H 1.09008 * 109.47059 * 176.19756 * 1 2 3 27 27 H 1.09006 * 109.48872 * 303.15123 * 3 2 1 28 28 H 1.08991 * 109.49277 * 63.20405 * 3 2 1 29 29 H 1.09007 * 109.48750 * 181.63006 * 4 3 2 30 30 H 1.09000 * 109.49343 * 61.56835 * 4 3 2 31 31 H 1.09005 * 109.46978 * 290.12757 * 6 5 4 32 32 H 1.09001 * 109.47143 * 170.13274 * 6 5 4 33 33 H 1.08994 * 109.47746 * 50.12807 * 6 5 4 34 34 H 1.09001 * 109.46703 * 174.37749 * 9 7 5 35 35 H 1.08997 * 109.47425 * 294.37787 * 9 7 5 36 36 H 0.97008 * 119.99748 * 4.70777 * 10 9 7 37 37 H 1.08994 * 109.47630 * 299.99841 * 13 11 10 38 38 H 1.09003 * 109.47587 * 59.99955 * 13 11 10 39 39 H 0.97000 * 120.00577 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.49140 * 56.84834 * 23 2 1 41 41 H 1.08995 * 109.50826 * 296.78866 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5659 1.0597 6 6 5.5190 0.5661 1.0597 7 6 3.5234 -0.8060 1.0598 8 1 3.8257 -1.3115 0.1426 9 6 4.0770 -1.5652 2.2673 10 7 3.7850 -0.8153 3.4914 11 6 4.2623 -1.2463 4.6758 12 8 4.9332 -2.2553 4.7282 13 6 3.9614 -0.4752 5.9351 14 16 4.7349 -1.3012 7.3478 15 6 4.2354 -0.2195 8.6458 16 1 3.6294 0.6465 8.4239 17 6 4.6208 -0.4804 9.9535 18 7 5.3589 -1.5361 10.2240 19 14 4.0918 0.6668 11.3295 20 1 2.7924 0.2090 11.8838 21 1 5.1182 0.6587 12.4027 22 1 3.9444 2.0448 10.7961 23 6 1.9956 -0.7632 1.1401 24 1 -0.3634 0.4537 0.9220 25 1 -0.3633 0.5716 -0.8540 26 1 -0.3633 -1.0255 -0.0682 27 1 1.6012 1.9128 -0.8603 28 1 1.6934 1.8775 0.9171 29 1 3.9177 2.3449 -0.0513 30 1 3.8253 0.8480 -1.0107 31 1 5.8824 -0.0391 0.2291 32 1 5.8824 0.1492 1.9990 33 1 5.8824 1.5879 0.9510 34 1 3.6100 -2.5485 2.3234 35 1 5.1556 -1.6808 2.1605 36 1 3.2481 -0.0084 3.4495 37 1 4.3563 0.5367 5.8446 38 1 2.8827 -0.4321 6.0858 39 1 5.6280 -1.7186 11.1378 40 1 1.6014 -1.7789 1.1110 41 1 1.6938 -0.2824 2.0705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318391102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:09 Heat of formation + Delta-G solvation = -47.796068 kcal Electronic energy + Delta-G solvation = -20888.177906 eV Core-core repulsion = 17735.309012 eV Total energy + Delta-G solvation = -3152.868894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 287.141 amu Computer time = 5.00 seconds Orbital eigenvalues (eV) -41.10587 -39.98793 -36.81112 -35.46758 -34.57903 -32.62858 -30.66977 -30.16176 -27.74356 -27.08823 -26.23536 -24.22115 -22.73541 -21.93277 -20.43926 -19.84186 -17.86791 -17.46090 -17.04071 -16.87493 -16.62850 -16.18809 -16.04533 -15.70303 -15.56001 -15.39993 -14.89308 -14.59978 -14.41145 -14.24790 -13.49093 -13.39974 -13.16902 -13.15137 -13.13058 -12.88509 -12.80711 -12.60737 -12.39026 -12.30199 -11.80459 -11.72175 -11.58774 -11.13724 -10.94243 -10.26836 -10.05951 -9.45689 -9.28981 -8.65553 -8.34011 -6.11886 1.28021 1.42844 1.47761 1.58508 1.65698 2.27092 2.33539 2.86022 2.90213 2.99983 3.34277 3.67041 3.79172 4.01323 4.04988 4.19839 4.24221 4.30253 4.37011 4.49643 4.52087 4.52987 4.60095 4.62107 4.69164 4.73024 4.76604 4.87585 4.97595 5.02718 5.04761 5.06897 5.42260 5.45303 5.90115 5.92569 6.09517 6.12575 6.20425 6.55816 7.07182 7.28487 8.75244 Molecular weight = 287.14amu Principal moments of inertia in cm(-1) A = 0.025054 B = 0.003248 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.309943 B = 8618.440528 C = 8928.961518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.553 5.553 3 C 0.055 3.945 4 C 0.059 3.941 5 N -0.547 5.547 6 C 0.026 3.974 7 C 0.087 3.913 8 H 0.069 0.931 9 C 0.129 3.871 10 N -0.698 5.698 11 C 0.534 3.466 12 O -0.568 6.568 13 C -0.128 4.128 14 S -0.149 6.149 15 C -0.548 4.548 16 H 0.081 0.919 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.259 1.259 23 C 0.062 3.938 24 H 0.025 0.975 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.037 0.963 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.414 0.586 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.271 0.729 40 H 0.086 0.914 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.836 8.120 -24.130 26.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.278 5.278 3 C -0.073 4.073 4 C -0.068 4.068 5 N -0.272 5.272 6 C -0.122 4.122 7 C -0.022 4.022 8 H 0.087 0.913 9 C 0.005 3.995 10 N -0.352 5.352 11 C 0.319 3.681 12 O -0.447 6.447 13 C -0.279 4.279 14 S 0.079 5.921 15 C -0.695 4.695 16 H 0.099 0.901 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.182 1.182 23 C -0.067 4.067 24 H 0.044 0.956 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.056 0.944 29 H 0.111 0.889 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.251 0.749 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.653 6.362 -23.975 25.958 hybrid contribution -0.948 1.702 0.947 2.166 sum -8.601 8.064 -23.028 25.871 Atomic orbital electron populations 1.22391 0.85997 1.02868 1.01055 1.62187 1.08942 1.14303 1.42319 1.22243 0.94404 0.89076 1.01593 1.22216 0.94461 0.98904 0.91267 1.62108 1.08487 1.12911 1.43741 1.22359 0.86573 1.02553 1.00725 1.21839 0.94766 0.89305 0.96318 0.91290 1.21401 1.00574 0.94854 0.82705 1.45608 1.54621 1.29930 1.05051 1.20000 0.78708 0.84364 0.84980 1.90685 1.40102 1.27005 1.86925 1.23341 1.05503 1.03327 0.95716 1.85533 1.69880 1.38188 0.98539 1.23210 1.38862 1.13283 0.94185 0.90053 1.26123 0.94425 0.97504 1.01047 1.70179 1.35456 1.27884 1.21236 0.84953 0.78123 0.78283 0.76611 1.19269 1.20248 1.18244 1.22179 0.93065 0.99287 0.92128 0.95621 0.90133 0.90932 0.88712 0.94426 0.88852 0.93986 0.94837 0.92626 0.90218 0.91170 0.91969 0.74855 0.87643 0.87585 0.91979 0.89592 0.94288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.60 127.69 1.23 1.52 16 2 N -0.55 -8.19 4.97 -921.95 -4.58 -12.77 16 3 C 0.05 0.72 5.62 86.31 0.49 1.20 16 4 C 0.06 0.80 5.61 86.31 0.48 1.28 16 5 N -0.55 -9.21 4.26 -896.55 -3.82 -13.04 16 6 C 0.03 0.44 8.99 127.69 1.15 1.59 16 7 C 0.09 1.52 2.21 44.92 0.10 1.62 16 8 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 9 C 0.13 2.97 4.63 86.38 0.40 3.37 16 10 N -0.70 -18.56 5.13 -463.07 -2.37 -20.93 16 11 C 0.53 20.13 7.85 87.66 0.69 20.82 16 12 O -0.57 -26.63 15.86 -3.03 -0.05 -26.68 16 13 C -0.13 -5.20 6.16 71.23 0.44 -4.76 16 14 S -0.15 -8.36 20.57 -56.49 -1.16 -9.53 16 15 C -0.55 -31.66 9.50 67.96 0.65 -31.02 16 16 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 17 C 0.01 0.79 5.49 84.86 0.47 1.26 16 18 N -0.91 -56.37 13.22 21.65 0.29 -56.09 16 19 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 C 0.06 1.02 4.80 86.31 0.41 1.43 16 24 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.08 0.77 8.13 -2.39 -0.02 0.75 16 26 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.09 0.95 8.13 -2.38 -0.02 0.93 16 28 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 1.04 8.07 -2.38 -0.02 1.02 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.03 0.53 8.12 -2.38 -0.02 0.51 16 32 H 0.05 1.20 6.74 -2.39 -0.02 1.18 16 33 H 0.08 1.17 8.03 -2.39 -0.02 1.15 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.59 6.83 -2.39 -0.02 1.57 16 36 H 0.41 9.37 7.27 -92.70 -0.67 8.70 16 37 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 38 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 39 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.04 0.70 7.08 -2.39 -0.02 0.69 16 Total: -1.00 -73.84 343.13 -2.84 -76.68 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.33 Total: 18.12 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 6.49 Total: -1.69 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -10.49 Total: -102.83 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.53 kcal Total: -73.84 -2.84 -76.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318391102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.885 kcal (2) G-P(sol) polarization free energy of solvation -73.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.00 seconds