Wall clock time and date at job start Tue Mar 31 2020 03:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48493 * 109.47251 * 239.99564 * 3 2 1 5 5 H 1.48499 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47069 * 119.99655 * 3 2 1 7 7 C 1.38796 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00101 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00151 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.09004 * 110.33442 * 307.24922 * 15 14 13 17 17 C 1.54480 * 110.37674 * 184.99805 * 15 14 13 18 18 C 1.54507 * 104.06516 * 217.19183 * 17 15 14 19 19 C 1.54474 * 104.06388 * 359.97438 * 18 17 15 20 20 H 1.09005 * 110.37607 * 265.04150 * 19 18 17 21 21 C 1.50701 * 110.37510 * 142.81114 * 19 18 17 22 22 N 1.34772 * 119.99740 * 64.99777 * 21 19 18 23 23 O 1.21277 * 120.00027 * 245.00175 * 21 19 18 24 24 O 1.44428 * 104.80532 * 23.97767 * 19 18 17 25 25 H 0.96999 * 120.00126 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46925 * 60.00021 * 10 9 7 27 27 H 1.09002 * 109.47115 * 300.00178 * 10 9 7 28 28 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 29 29 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 30 30 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 31 31 H 1.09000 * 110.50496 * 335.83933 * 17 15 14 32 32 H 1.09003 * 110.50627 * 98.40377 * 17 15 14 33 33 H 1.08996 * 110.51003 * 118.64546 * 18 17 15 34 34 H 1.09004 * 110.50908 * 241.22009 * 18 17 15 35 35 H 0.97002 * 120.00424 * 0.02562 * 22 21 19 36 36 H 0.97006 * 119.99997 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9874 -5.3028 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 6 2.3305 -7.7151 0.0034 15 6 3.5025 -8.6985 0.0046 16 1 4.1909 -8.4684 -0.8086 17 6 2.9873 -10.1494 -0.1213 18 6 3.9342 -10.9644 0.7878 19 6 4.9100 -9.9096 1.3549 20 1 5.8164 -9.8675 0.7509 21 6 5.2502 -10.2268 2.7884 22 7 5.9314 -11.3509 3.0864 23 8 4.9110 -9.4706 3.6737 24 8 4.1906 -8.6599 1.2736 25 1 -0.4850 0.8400 -0.0004 26 1 3.1238 -3.7310 0.8925 27 1 3.1252 -3.7318 -0.8874 28 1 3.8010 -6.1835 0.0043 29 1 1.7209 -7.8747 0.8928 30 1 1.7228 -7.8757 -0.8871 31 1 1.9597 -10.2220 0.2348 32 1 3.0577 -10.4913 -1.1540 33 1 3.3748 -11.4399 1.5933 34 1 4.4733 -11.7117 0.2054 35 1 6.2030 -11.9556 2.3782 36 1 6.1501 -11.5552 4.0091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319294122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:10 Heat of formation + Delta-G solvation = -125.581456 kcal Electronic energy + Delta-G solvation = -19923.769817 eV Core-core repulsion = 16533.976139 eV Total energy + Delta-G solvation = -3389.793678 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70842 -39.20165 -38.49034 -34.56771 -34.20022 -32.51837 -32.37455 -30.97022 -28.98562 -26.12752 -25.37369 -23.06944 -21.67228 -20.95132 -20.19202 -18.20661 -17.78855 -17.39051 -16.89833 -16.15655 -16.03021 -15.92213 -14.94895 -14.83902 -14.75394 -14.57974 -14.11669 -13.87031 -13.29387 -13.06341 -12.80661 -12.55684 -12.28610 -12.15841 -11.73717 -11.65622 -11.24523 -10.99263 -10.99013 -10.71769 -10.45480 -10.14689 -10.04427 -9.76925 -9.33449 -9.01062 -8.81792 -8.17594 -6.43664 -6.16135 -3.86222 2.19074 2.67772 3.08340 3.18716 3.27839 3.31366 3.35237 3.57145 3.79227 3.99414 4.21915 4.25978 4.33646 4.54398 4.61857 4.75362 4.94767 4.99105 5.18745 5.21805 5.26968 5.39701 5.49362 5.54502 5.68464 5.89406 5.98004 6.22892 6.23911 6.38927 6.67066 6.84734 7.64786 7.78884 7.83597 8.40676 8.69085 9.28937 10.91307 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.030735 B = 0.002760 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.784335 B =10143.700177 C =10706.986772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.520 6.520 13 N -0.735 5.735 14 C 0.129 3.871 15 C 0.060 3.940 16 H 0.081 0.919 17 C -0.146 4.146 18 C -0.144 4.144 19 C 0.055 3.945 20 H 0.097 0.903 21 C 0.520 3.480 22 N -0.854 5.854 23 O -0.515 6.515 24 O -0.334 6.334 25 H 0.268 0.732 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.401 0.599 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.401 0.599 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.868 -27.138 -1.064 30.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.319 3.681 12 O -0.394 6.394 13 N -0.390 5.390 14 C 0.005 3.995 15 C 0.002 3.998 16 H 0.099 0.901 17 C -0.184 4.184 18 C -0.182 4.182 19 C -0.007 4.007 20 H 0.115 0.885 21 C 0.303 3.697 22 N -0.421 5.421 23 O -0.388 6.388 24 O -0.252 6.252 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.235 0.765 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.229 0.771 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 11.354 -26.546 -0.460 28.876 hybrid contribution 2.784 0.705 -0.100 2.873 sum 14.137 -25.841 -0.560 29.461 Atomic orbital electron populations 1.70012 1.05943 1.27505 1.46916 1.24990 0.95030 0.99005 0.94590 0.86220 0.79220 0.81248 0.78786 1.19975 1.20842 1.19933 1.22838 0.94899 0.91697 1.58881 0.90974 1.85370 1.05038 0.96279 1.96716 1.23526 1.06511 0.95322 1.04984 1.20291 0.86471 0.86291 0.75052 1.90695 1.15360 1.85636 1.47746 1.45904 1.10146 1.05129 1.77806 1.21332 0.94342 0.80527 1.03292 1.23380 0.94139 0.95325 0.86916 0.90070 1.22919 1.00943 0.93644 1.00916 1.22910 0.97372 0.97820 1.00061 1.22834 0.97264 0.86699 0.93884 0.88542 1.20255 0.77573 0.81161 0.90694 1.43743 1.60390 1.24953 1.12969 1.90831 1.51236 1.47872 1.48836 1.89379 1.64392 1.34300 1.37144 0.92171 0.89110 0.89240 0.76537 0.90568 0.89958 0.89527 0.89462 0.89982 0.89399 0.77099 0.76306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.73 13.22 55.49 0.73 -26.00 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -15.66 9.50 30.94 0.29 -15.36 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.25 6.16 36.01 0.22 -3.03 16 11 C 0.53 10.57 7.85 -10.99 -0.09 10.48 16 12 O -0.52 -12.31 15.86 5.56 0.09 -12.23 16 13 N -0.74 -10.78 5.56 -60.29 -0.33 -11.12 16 14 C 0.13 1.59 5.28 -4.04 -0.02 1.57 16 15 C 0.06 0.53 3.31 -25.96 -0.09 0.44 16 16 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 17 C -0.15 -0.87 6.63 -25.16 -0.17 -1.04 16 18 C -0.14 -0.70 6.61 -25.17 -0.17 -0.86 16 19 C 0.05 0.41 3.71 -27.11 -0.10 0.31 16 20 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 21 C 0.52 4.84 7.35 -10.99 -0.08 4.76 16 22 N -0.85 -3.62 8.86 31.22 0.28 -3.35 16 23 O -0.51 -7.89 17.39 -13.66 -0.24 -8.13 16 24 O -0.33 -3.87 10.60 -54.45 -0.58 -4.45 16 25 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 27 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 28 H 0.40 4.91 8.47 -40.82 -0.35 4.56 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 0.57 7.87 -51.93 -0.41 0.16 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.45 7.87 -51.93 -0.41 0.04 16 34 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.40 0.26 8.83 -40.82 -0.36 -0.10 16 36 H 0.41 1.49 8.93 -40.82 -0.36 1.12 16 LS Contribution 328.05 15.07 4.94 4.94 Total: -1.00 -40.31 328.05 -7.45 -47.75 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.81 Total: 0.32 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -0.29 Total: -0.69 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.68 Total: -40.47 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.73 Total: -24.81 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -40.31 -7.45 -47.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319294122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.830 kcal (2) G-P(sol) polarization free energy of solvation -40.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds