Wall clock time and date at job start Tue Mar 31 2020 03:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48493 * 109.47251 * 239.99564 * 3 2 1 5 5 H 1.48499 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47069 * 119.99655 * 3 2 1 7 7 C 1.38796 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00101 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00151 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.09004 * 110.33442 * 307.24922 * 15 14 13 17 17 C 1.54480 * 110.37674 * 184.99805 * 15 14 13 18 18 C 1.54507 * 104.06516 * 217.19183 * 17 15 14 19 19 C 1.54474 * 104.06388 * 359.97438 * 18 17 15 20 20 H 1.09005 * 110.37607 * 265.04150 * 19 18 17 21 21 C 1.50701 * 110.37510 * 142.81114 * 19 18 17 22 22 N 1.34772 * 119.99740 * 64.99777 * 21 19 18 23 23 O 1.21277 * 120.00027 * 245.00175 * 21 19 18 24 24 O 1.44428 * 104.80532 * 23.97767 * 19 18 17 25 25 H 0.96999 * 120.00126 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46925 * 60.00021 * 10 9 7 27 27 H 1.09002 * 109.47115 * 300.00178 * 10 9 7 28 28 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 29 29 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 30 30 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 31 31 H 1.09000 * 110.50496 * 335.83933 * 17 15 14 32 32 H 1.09003 * 110.50627 * 98.40377 * 17 15 14 33 33 H 1.08996 * 110.51003 * 118.64546 * 18 17 15 34 34 H 1.09004 * 110.50908 * 241.22009 * 18 17 15 35 35 H 0.97002 * 120.00424 * 0.02562 * 22 21 19 36 36 H 0.97006 * 119.99997 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9874 -5.3028 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 6 2.3305 -7.7151 0.0034 15 6 3.5025 -8.6985 0.0046 16 1 4.1909 -8.4684 -0.8086 17 6 2.9873 -10.1494 -0.1213 18 6 3.9342 -10.9644 0.7878 19 6 4.9100 -9.9096 1.3549 20 1 5.8164 -9.8675 0.7509 21 6 5.2502 -10.2268 2.7884 22 7 5.9314 -11.3509 3.0864 23 8 4.9110 -9.4706 3.6737 24 8 4.1906 -8.6599 1.2736 25 1 -0.4850 0.8400 -0.0004 26 1 3.1238 -3.7310 0.8925 27 1 3.1252 -3.7318 -0.8874 28 1 3.8010 -6.1835 0.0043 29 1 1.7209 -7.8747 0.8928 30 1 1.7228 -7.8757 -0.8871 31 1 1.9597 -10.2220 0.2348 32 1 3.0577 -10.4913 -1.1540 33 1 3.3748 -11.4399 1.5933 34 1 4.4733 -11.7117 0.2054 35 1 6.2030 -11.9556 2.3782 36 1 6.1501 -11.5552 4.0091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319294122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:09 Heat of formation + Delta-G solvation = -160.102383 kcal Electronic energy + Delta-G solvation = -19925.266757 eV Core-core repulsion = 16533.976139 eV Total energy + Delta-G solvation = -3391.290618 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.098 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.39370 -40.54789 -39.39209 -35.84328 -34.85422 -34.58767 -33.11415 -32.06054 -30.28129 -27.72717 -26.90405 -23.73420 -22.39678 -21.71769 -21.44961 -19.85155 -18.72935 -18.05199 -17.90895 -17.37561 -17.16909 -16.88055 -16.83462 -16.22239 -15.87462 -15.61372 -15.25268 -14.72540 -14.65441 -14.45198 -14.26110 -13.78307 -13.31758 -13.17553 -12.86510 -12.80213 -12.66806 -12.62860 -12.37391 -11.75441 -11.70796 -11.14405 -11.13142 -10.97642 -10.75081 -10.69401 -10.29599 -10.15875 -8.67639 -8.34641 -6.13305 1.26056 1.44150 1.46023 1.52982 1.56320 1.59450 2.13194 2.26220 2.29693 2.99100 3.00050 3.31944 3.46748 3.71631 3.88858 3.96700 4.02441 4.09963 4.14769 4.28195 4.43697 4.48436 4.49788 4.63419 4.83890 4.92033 5.03870 5.12653 5.39698 5.41252 5.70171 5.88837 6.19516 6.44161 6.46704 7.06066 7.21179 7.31428 8.74556 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.030735 B = 0.002760 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.784335 B =10143.700177 C =10706.986772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.151 6.151 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.711 5.711 14 C 0.124 3.876 15 C 0.065 3.935 16 H 0.109 0.891 17 C -0.144 4.144 18 C -0.134 4.134 19 C 0.050 3.950 20 H 0.132 0.868 21 C 0.514 3.486 22 N -0.827 5.827 23 O -0.590 6.590 24 O -0.379 6.379 25 H 0.272 0.728 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.415 0.585 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.422 0.578 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.888 -28.733 -2.446 33.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.365 5.365 14 C 0.001 3.999 15 C 0.007 3.993 16 H 0.127 0.873 17 C -0.182 4.182 18 C -0.172 4.172 19 C -0.011 4.011 20 H 0.150 0.850 21 C 0.298 3.702 22 N -0.393 5.393 23 O -0.469 6.469 24 O -0.298 6.298 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.252 0.748 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.136 0.864 33 H 0.090 0.910 34 H 0.150 0.850 35 H 0.254 0.746 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 14.457 -28.248 -1.870 31.788 hybrid contribution 1.915 1.009 0.347 2.193 sum 16.372 -27.239 -1.523 31.817 Atomic orbital electron populations 1.70181 1.07989 1.28717 1.47904 1.26160 0.96012 1.03387 0.93675 0.84976 0.77785 0.75548 0.79502 1.18458 1.20253 1.18832 1.23178 0.95353 0.91990 1.59063 0.89947 1.85543 1.10544 0.99231 1.97055 1.23369 1.03590 0.94387 1.06717 1.20074 0.86230 0.86748 0.75112 1.90680 1.17308 1.86143 1.50388 1.45710 1.10325 1.05150 1.75292 1.21543 0.96194 0.79769 1.02431 1.23451 0.93143 0.95781 0.86894 0.87299 1.22964 1.00386 0.91856 1.02971 1.22950 0.96711 0.97633 0.99878 1.23164 0.98881 0.86038 0.93020 0.85026 1.20796 0.77000 0.81303 0.91074 1.43552 1.58105 1.23565 1.14093 1.90798 1.54643 1.50587 1.50891 1.89340 1.65316 1.36653 1.38470 0.91943 0.87790 0.86814 0.74787 0.93259 0.89088 0.90866 0.86363 0.91006 0.85022 0.74573 0.75816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.32 13.22 21.65 0.29 -57.03 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 44.69 29.55 68.60 2.03 46.71 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.55 -32.33 9.50 67.95 0.65 -31.68 16 8 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 9 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 10 C -0.13 -5.49 6.16 71.24 0.44 -5.05 16 11 C 0.53 21.26 7.85 87.66 0.69 21.95 16 12 O -0.57 -27.77 15.86 -3.03 -0.05 -27.82 16 13 N -0.71 -20.26 5.56 -463.06 -2.57 -22.84 16 14 C 0.12 2.98 5.28 86.38 0.46 3.44 16 15 C 0.06 0.99 3.31 31.10 0.10 1.09 16 16 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 17 C -0.14 -1.29 6.63 31.61 0.21 -1.08 16 18 C -0.13 -0.82 6.61 31.61 0.21 -0.61 16 19 C 0.05 0.61 3.71 30.35 0.11 0.72 16 20 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 21 C 0.51 9.02 7.35 87.66 0.64 9.67 16 22 N -0.83 -5.22 8.86 -173.54 -1.54 -6.76 16 23 O -0.59 -18.70 17.39 15.36 0.27 -18.44 16 24 O -0.38 -8.31 10.60 -130.60 -1.38 -9.70 16 25 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 26 H 0.10 4.12 8.14 -2.39 -0.02 4.10 16 27 H 0.11 4.25 8.14 -2.39 -0.02 4.23 16 28 H 0.42 9.41 8.47 -92.71 -0.79 8.62 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 0.86 7.87 -2.39 -0.02 0.85 16 32 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.07 0.62 7.87 -2.39 -0.02 0.60 16 34 H 0.13 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.42 -0.96 8.83 -92.71 -0.82 -1.77 16 36 H 0.41 2.36 8.93 -92.70 -0.83 1.53 16 Total: -1.00 -93.83 328.05 -1.45 -95.28 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -1.30 Total: 10.83 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 3.97 Total: -0.35 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -3.82 Total: -86.63 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -1.17 Total: -55.95 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -93.83 -1.45 -95.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319294122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.821 kcal (2) G-P(sol) polarization free energy of solvation -93.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds