Wall clock time and date at job start Tue Mar 31 2020 03:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65599 * 119.99951 * 2 1 4 4 O 1.42094 * 106.39955 * 311.45665 * 3 2 1 5 5 O 1.42100 * 106.39733 * 178.53611 * 3 2 1 6 6 C 1.76199 * 107.21958 * 64.99865 * 3 2 1 7 7 C 1.34167 * 125.42976 * 89.99454 * 6 3 2 8 8 C 1.47032 * 105.95963 * 180.02562 * 7 6 3 9 9 C 1.47303 * 127.19692 * 179.97438 * 8 7 6 10 10 O 1.21637 * 120.00223 * 207.94085 * 9 8 7 11 11 N 1.34782 * 119.99619 * 27.93502 * 9 8 7 12 12 C 1.46491 * 120.00156 * 5.63617 * 11 9 8 13 13 C 1.36958 * 119.99760 * 185.63106 * 11 9 8 14 14 H 1.08002 * 120.00188 * 4.75285 * 13 11 9 15 15 C 1.38975 * 120.00277 * 184.74700 * 13 11 9 16 16 N 1.31413 * 119.99968 * 7.01931 * 15 13 11 17 17 Si 1.86804 * 120.00334 * 187.02029 * 15 13 11 18 18 H 1.48496 * 109.46863 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47033 * 119.99902 * 17 15 13 20 20 H 1.48500 * 109.46869 * 240.00189 * 17 15 13 21 21 C 1.36492 * 105.60914 * 0.02562 * 8 7 6 22 22 O 1.33677 * 108.37662 * 359.97438 * 21 8 7 23 23 H 1.09005 * 109.47328 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47694 * 300.00630 * 1 2 3 25 25 H 1.09006 * 109.47100 * 60.00641 * 1 2 3 26 26 H 0.96998 * 119.99753 * 179.97438 * 2 1 3 27 27 H 1.07999 * 127.02122 * 359.76811 * 7 6 3 28 28 H 1.09003 * 109.47312 * 5.91789 * 12 11 9 29 29 H 1.09002 * 109.47720 * 125.92104 * 12 11 9 30 30 H 1.08999 * 109.47169 * 245.92106 * 12 11 9 31 31 H 0.96997 * 120.00061 * 179.97438 * 16 15 13 32 32 H 1.07999 * 125.81465 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2328 -1.0216 5 8 3.6737 1.1002 0.0348 6 6 1.9378 2.2415 1.5253 7 6 2.6390 2.1024 2.6607 8 6 1.9745 2.9593 3.6537 9 6 2.3612 3.1558 5.0615 10 8 1.5183 3.4460 5.8889 11 7 3.6491 3.0138 5.4326 12 6 4.6825 2.7864 4.4195 13 6 3.9917 3.0823 6.7568 14 1 3.2225 3.1730 7.5096 15 6 5.3290 3.0349 7.1321 16 7 6.2701 3.0636 6.2153 17 14 5.7888 2.9303 8.9396 18 1 4.5540 2.9118 9.7642 19 1 6.5640 1.6871 9.1820 20 1 6.6140 4.1082 9.3093 21 6 0.9237 3.5336 2.9988 22 8 0.9220 3.0930 1.7368 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.9499 -0.8400 0.0004 27 1 3.5107 1.4839 2.8149 28 1 4.2415 2.8673 3.4260 29 1 5.4697 3.5324 4.5294 30 1 5.1055 1.7902 4.5491 31 1 7.2034 3.0309 6.4772 32 1 0.2144 4.2262 3.4273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319491670.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:48 Heat of formation + Delta-G solvation = -60.005258 kcal Electronic energy + Delta-G solvation = -20988.874126 eV Core-core repulsion = 17466.090951 eV Total energy + Delta-G solvation = -3522.783176 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.32420 -38.34938 -37.39973 -36.04250 -35.25155 -34.86611 -32.97356 -31.44412 -29.89037 -26.62601 -26.25765 -24.98314 -22.49551 -22.22806 -20.37441 -19.26100 -17.86010 -17.62800 -16.93473 -16.60410 -16.06574 -15.86512 -15.78305 -14.87666 -14.57423 -14.13236 -13.99572 -13.94513 -13.30146 -13.09761 -12.67865 -12.51695 -12.29693 -12.19673 -11.86304 -11.77239 -11.72123 -11.47074 -11.09901 -10.87367 -10.40910 -10.34606 -9.96914 -9.51742 -9.23787 -8.92120 -8.65211 -8.00491 -6.32746 -3.94554 0.12061 1.27888 2.07849 2.75420 3.09662 3.14269 3.17577 3.24825 3.52338 3.96479 4.09070 4.43817 4.69544 4.77709 4.99417 5.08087 5.17261 5.21971 5.40792 5.50175 5.53691 5.79363 5.94573 6.27841 6.37797 6.63491 6.87924 6.94503 7.31643 7.51703 7.92729 8.35791 9.02758 9.27699 9.82742 10.53148 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.004460 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.123042 B = 6276.350117 C = 6768.415343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.115 6.115 3 S 2.732 3.268 4 O -0.943 6.943 5 O -0.939 6.939 6 C -0.598 4.598 7 C -0.056 4.056 8 C -0.206 4.206 9 C 0.488 3.512 10 O -0.598 6.598 11 N -0.425 5.425 12 C 0.079 3.921 13 C -0.296 4.296 14 H 0.109 0.891 15 C 0.026 3.974 16 N -0.878 5.878 17 Si 0.937 3.063 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.279 1.279 21 C 0.052 3.948 22 O -0.131 6.131 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.421 0.579 27 H 0.176 0.824 28 H 0.038 0.962 29 H 0.108 0.892 30 H 0.051 0.949 31 H 0.268 0.732 32 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.190 -6.461 -12.072 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.876 5.876 3 S 2.814 3.186 4 O -0.933 6.933 5 O -0.929 6.929 6 C -0.727 4.727 7 C -0.078 4.078 8 C -0.211 4.211 9 C 0.278 3.722 10 O -0.486 6.486 11 N -0.141 5.141 12 C -0.063 4.063 13 C -0.424 4.424 14 H 0.127 0.873 15 C -0.176 4.176 16 N -0.518 5.518 17 Si 0.763 3.237 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.021 4.021 22 O -0.025 6.025 23 H 0.102 0.898 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.255 0.745 27 H 0.193 0.807 28 H 0.056 0.944 29 H 0.126 0.874 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -7.129 -5.761 -12.500 15.500 hybrid contribution 0.556 -0.439 1.786 1.921 sum -6.574 -6.199 -10.714 14.015 Atomic orbital electron populations 1.21536 0.78039 1.04273 1.02505 1.55332 1.16563 1.24306 1.91416 1.01270 0.72798 0.72466 0.72102 1.93588 1.78621 1.68306 1.52779 1.93669 1.29710 1.83282 1.86222 1.35301 1.01196 1.13621 1.22627 1.23408 0.97553 0.96587 0.90260 1.22084 0.98769 1.03119 0.97111 1.16744 0.83516 0.86857 0.85124 1.90622 1.50215 1.55664 1.52085 1.43623 1.04876 1.58140 1.07449 1.22568 0.92001 1.04013 0.87758 1.19952 0.92890 1.47151 0.82425 0.87332 1.25432 0.95230 0.96294 1.00663 1.70062 1.00808 1.48571 1.32376 0.85685 0.78804 0.77953 0.81266 1.19069 1.20451 1.20484 1.24783 0.98607 0.97784 0.80959 1.83874 1.41611 1.47926 1.29122 0.89768 0.91798 0.91076 0.74455 0.80666 0.94424 0.87366 0.93079 0.92039 0.76089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 11.14 59.85 0.67 1.26 16 2 N -1.12 -9.59 6.19 -16.63 -0.10 -9.69 16 3 S 2.73 34.53 5.89 -107.50 -0.63 33.90 16 4 O -0.94 -14.15 17.74 -57.28 -1.02 -15.17 16 5 O -0.94 -13.92 17.81 -57.17 -1.02 -14.94 16 6 C -0.60 -9.12 7.29 29.30 0.21 -8.91 16 7 C -0.06 -0.98 8.32 -37.45 -0.31 -1.29 16 8 C -0.21 -4.14 5.70 -103.28 -0.59 -4.73 16 9 C 0.49 12.24 7.57 -12.57 -0.10 12.15 16 10 O -0.60 -16.65 16.62 5.24 0.09 -16.56 16 11 N -0.43 -11.07 3.02 -123.47 -0.37 -11.45 16 12 C 0.08 1.84 7.86 59.84 0.47 2.31 16 13 C -0.30 -8.17 9.55 -14.99 -0.14 -8.32 16 14 H 0.11 3.12 7.20 -52.49 -0.38 2.74 16 15 C 0.03 0.68 5.42 -17.46 -0.09 0.59 16 16 N -0.88 -22.63 9.57 55.50 0.53 -22.09 16 17 Si 0.94 20.25 29.56 -169.99 -5.02 15.23 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 C 0.05 0.87 12.01 30.10 0.36 1.23 16 22 O -0.13 -2.04 10.52 7.58 0.08 -1.96 16 23 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 26 H 0.42 2.60 8.96 -34.47 -0.31 2.30 16 27 H 0.18 2.87 6.56 -52.49 -0.34 2.53 16 28 H 0.04 0.77 3.87 -51.93 -0.20 0.57 16 29 H 0.11 2.70 6.05 -51.93 -0.31 2.38 16 30 H 0.05 1.18 7.87 -51.93 -0.41 0.77 16 31 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 32 H 0.22 3.00 8.06 -52.49 -0.42 2.58 16 LS Contribution 294.36 15.07 4.44 4.44 Total: -1.00 -35.00 294.36 -5.33 -40.33 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -2.78 Total: 3.67 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 0.48 Total: -5.71 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.06 Total: -43.24 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -1.87 Total: -48.63 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 34.53 SS G_CDS: -0.63 Total: 33.90 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.00 -5.33 -40.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319491670.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.672 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds