Wall clock time and date at job start Tue Mar 31 2020 03:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65599 * 119.99951 * 2 1 4 4 O 1.42094 * 106.39955 * 311.45665 * 3 2 1 5 5 O 1.42100 * 106.39733 * 178.53611 * 3 2 1 6 6 C 1.76199 * 107.21958 * 64.99865 * 3 2 1 7 7 C 1.34167 * 125.42976 * 89.99454 * 6 3 2 8 8 C 1.47032 * 105.95963 * 180.02562 * 7 6 3 9 9 C 1.47303 * 127.19692 * 179.97438 * 8 7 6 10 10 O 1.21637 * 120.00223 * 207.94085 * 9 8 7 11 11 N 1.34782 * 119.99619 * 27.93502 * 9 8 7 12 12 C 1.46491 * 120.00156 * 5.63617 * 11 9 8 13 13 C 1.36958 * 119.99760 * 185.63106 * 11 9 8 14 14 H 1.08002 * 120.00188 * 4.75285 * 13 11 9 15 15 C 1.38975 * 120.00277 * 184.74700 * 13 11 9 16 16 N 1.31413 * 119.99968 * 7.01931 * 15 13 11 17 17 Si 1.86804 * 120.00334 * 187.02029 * 15 13 11 18 18 H 1.48496 * 109.46863 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47033 * 119.99902 * 17 15 13 20 20 H 1.48500 * 109.46869 * 240.00189 * 17 15 13 21 21 C 1.36492 * 105.60914 * 0.02562 * 8 7 6 22 22 O 1.33677 * 108.37662 * 359.97438 * 21 8 7 23 23 H 1.09005 * 109.47328 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47694 * 300.00630 * 1 2 3 25 25 H 1.09006 * 109.47100 * 60.00641 * 1 2 3 26 26 H 0.96998 * 119.99753 * 179.97438 * 2 1 3 27 27 H 1.07999 * 127.02122 * 359.76811 * 7 6 3 28 28 H 1.09003 * 109.47312 * 5.91789 * 12 11 9 29 29 H 1.09002 * 109.47720 * 125.92104 * 12 11 9 30 30 H 1.08999 * 109.47169 * 245.92106 * 12 11 9 31 31 H 0.96997 * 120.00061 * 179.97438 * 16 15 13 32 32 H 1.07999 * 125.81465 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2328 -1.0216 5 8 3.6737 1.1002 0.0348 6 6 1.9378 2.2415 1.5253 7 6 2.6390 2.1024 2.6607 8 6 1.9745 2.9593 3.6537 9 6 2.3612 3.1558 5.0615 10 8 1.5183 3.4460 5.8889 11 7 3.6491 3.0138 5.4326 12 6 4.6825 2.7864 4.4195 13 6 3.9917 3.0823 6.7568 14 1 3.2225 3.1730 7.5096 15 6 5.3290 3.0349 7.1321 16 7 6.2701 3.0636 6.2153 17 14 5.7888 2.9303 8.9396 18 1 4.5540 2.9118 9.7642 19 1 6.5640 1.6871 9.1820 20 1 6.6140 4.1082 9.3093 21 6 0.9237 3.5336 2.9988 22 8 0.9220 3.0930 1.7368 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.9499 -0.8400 0.0004 27 1 3.5107 1.4839 2.8149 28 1 4.2415 2.8673 3.4260 29 1 5.4697 3.5324 4.5294 30 1 5.1055 1.7902 4.5491 31 1 7.2034 3.0309 6.4772 32 1 0.2144 4.2262 3.4273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319491670.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:47 Heat of formation + Delta-G solvation = -88.803708 kcal Electronic energy + Delta-G solvation = -20990.122921 eV Core-core repulsion = 17466.090951 eV Total energy + Delta-G solvation = -3524.031970 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.69950 -40.26606 -38.51955 -37.16323 -36.86415 -35.97503 -34.54273 -33.31583 -31.27542 -28.54610 -26.90945 -26.84218 -24.16996 -23.51534 -21.80280 -20.30546 -19.40174 -18.88023 -18.75437 -17.87052 -17.35994 -17.29329 -17.07804 -16.39354 -15.99719 -15.84725 -15.76316 -14.85044 -14.63610 -14.35784 -14.11647 -13.88407 -13.58449 -13.53871 -13.41625 -13.32447 -12.88749 -12.83243 -12.70861 -12.57094 -12.28138 -12.12694 -11.21205 -10.98424 -10.69581 -10.67537 -10.30207 -9.99759 -8.28172 -6.01837 -0.92103 -0.01085 0.54899 1.38238 1.39608 1.54192 1.63948 1.99449 2.16055 2.25280 2.50025 2.93386 3.08462 3.38575 3.66297 3.67269 3.95174 4.21170 4.24608 4.50890 4.65956 4.68923 4.84010 4.90207 4.98128 5.02146 5.32588 5.47670 5.57394 5.94844 6.06126 6.37018 7.02404 7.32051 7.86174 8.56253 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.004460 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.123042 B = 6276.350117 C = 6768.415343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -1.097 6.097 3 S 2.754 3.246 4 O -0.961 6.961 5 O -0.960 6.960 6 C -0.582 4.582 7 C -0.069 4.069 8 C -0.250 4.250 9 C 0.485 3.515 10 O -0.637 6.637 11 N -0.443 5.443 12 C 0.091 3.909 13 C -0.341 4.341 14 H 0.084 0.916 15 C -0.004 4.004 16 N -0.891 5.891 17 Si 1.002 2.998 18 H -0.273 1.273 19 H -0.266 1.266 20 H -0.269 1.269 21 C 0.081 3.919 22 O -0.120 6.120 23 H 0.116 0.884 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.435 0.565 27 H 0.181 0.819 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.276 0.724 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 -7.355 -13.286 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.863 5.863 3 S 2.832 3.168 4 O -0.951 6.951 5 O -0.950 6.950 6 C -0.708 4.708 7 C -0.091 4.091 8 C -0.255 4.255 9 C 0.276 3.724 10 O -0.527 6.527 11 N -0.158 5.158 12 C -0.051 4.051 13 C -0.469 4.469 14 H 0.102 0.898 15 C -0.205 4.205 16 N -0.530 5.530 17 Si 0.824 3.176 18 H -0.197 1.197 19 H -0.190 1.190 20 H -0.194 1.194 21 C 0.007 3.993 22 O -0.013 6.013 23 H 0.135 0.865 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.273 0.727 27 H 0.198 0.802 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.528 -6.654 -13.730 17.013 hybrid contribution 0.582 -0.207 2.020 2.112 sum -6.946 -6.860 -11.710 15.246 Atomic orbital electron populations 1.21847 0.76584 1.06541 1.02637 1.55001 1.17377 1.23370 1.90511 1.00725 0.72207 0.72744 0.71100 1.93569 1.78954 1.69671 1.52898 1.93636 1.31589 1.83595 1.86151 1.35866 0.99890 1.12426 1.22636 1.23388 0.98379 0.97023 0.90287 1.21764 1.01599 1.06631 0.95486 1.17391 0.82848 0.85295 0.86875 1.90567 1.51105 1.57089 1.53976 1.43818 1.05801 1.58714 1.07479 1.22444 0.91205 1.02904 0.88573 1.19906 0.93302 1.50551 0.83117 0.89819 1.26223 0.94476 0.94965 1.04867 1.70164 1.01197 1.47724 1.33919 0.84751 0.78201 0.78596 0.76019 1.19717 1.19046 1.19446 1.25261 0.97100 0.96213 0.80679 1.83927 1.41458 1.47520 1.28410 0.86550 0.92020 0.90677 0.72714 0.80161 0.91689 0.89199 0.93633 0.91372 0.73248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 11.14 127.77 1.42 2.19 16 2 N -1.10 -15.66 6.19 -206.53 -1.28 -16.94 16 3 S 2.75 63.66 5.89 -56.49 -0.33 63.33 16 4 O -0.96 -26.68 17.74 -127.90 -2.27 -28.95 16 5 O -0.96 -26.81 17.81 -128.00 -2.28 -29.09 16 6 C -0.58 -16.61 7.29 66.89 0.49 -16.12 16 7 C -0.07 -2.35 8.32 23.65 0.20 -2.15 16 8 C -0.25 -9.97 5.70 -18.99 -0.11 -10.08 16 9 C 0.49 24.96 7.57 86.63 0.66 25.62 16 10 O -0.64 -36.66 16.62 -4.15 -0.07 -36.72 16 11 N -0.44 -23.79 3.02 -662.78 -2.00 -25.79 16 12 C 0.09 4.30 7.86 127.77 1.00 5.31 16 13 C -0.34 -19.52 9.55 84.07 0.80 -18.72 16 14 H 0.08 5.07 7.20 -2.91 -0.02 5.05 16 15 C 0.00 -0.20 5.42 84.93 0.46 0.26 16 16 N -0.89 -46.21 9.57 21.67 0.21 -46.00 16 17 Si 1.00 41.73 29.56 68.60 2.03 43.76 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 21 C 0.08 2.57 12.01 67.41 0.81 3.38 16 22 O -0.12 -3.45 10.52 4.19 0.04 -3.40 16 23 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.81 8.10 -2.38 -0.02 0.79 16 26 H 0.43 4.03 8.96 -96.75 -0.87 3.17 16 27 H 0.18 5.81 6.56 -2.91 -0.02 5.79 16 28 H 0.07 2.67 3.87 -2.39 -0.01 2.66 16 29 H 0.09 4.57 6.05 -2.39 -0.01 4.56 16 30 H 0.05 2.14 7.87 -2.39 -0.02 2.12 16 31 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 32 H 0.25 6.22 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -76.79 294.36 0.10 -76.69 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.32 Total: 13.45 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 5.73 Total: -10.33 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -3.07 Total: -88.73 kcal Atomic # 8 Polarization: -93.59 SS G_CDS: -4.57 Total: -98.17 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 63.66 SS G_CDS: -0.33 Total: 63.33 kcal Total: -76.79 0.10 -76.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319491670.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.110 kcal (2) G-P(sol) polarization free energy of solvation -76.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds