Wall clock time and date at job start Tue Mar 31 2020 03:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00240 * 2 1 4 4 S 1.65600 * 120.00112 * 180.02562 * 2 1 3 5 5 O 1.42104 * 106.40081 * 336.45782 * 4 2 1 6 6 O 1.42102 * 106.40161 * 203.54035 * 4 2 1 7 7 C 1.76198 * 107.22074 * 89.99822 * 4 2 1 8 8 C 1.34171 * 125.42877 * 90.02450 * 7 4 2 9 9 C 1.47035 * 105.95942 * 180.02562 * 8 7 4 10 10 C 1.47291 * 127.19534 * 180.02562 * 9 8 7 11 11 O 1.21642 * 120.00305 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00011 * 180.02562 * 10 9 8 13 13 C 1.36968 * 119.99897 * 179.97438 * 12 10 9 14 14 H 1.07994 * 120.00237 * 359.97438 * 13 12 10 15 15 C 1.38978 * 119.99667 * 179.97438 * 13 12 10 16 16 N 1.31409 * 120.00483 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99791 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46981 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46949 * 120.00168 * 17 15 13 20 20 H 1.48501 * 109.47174 * 239.99700 * 17 15 13 21 21 C 1.36496 * 105.60461 * 0.02562 * 9 8 7 22 22 O 1.33667 * 108.38231 * 359.97438 * 21 9 8 23 23 H 1.09001 * 109.47164 * 270.00192 * 1 2 3 24 24 H 1.09002 * 109.47104 * 29.99778 * 1 2 3 25 25 H 1.08997 * 109.47279 * 149.99731 * 1 2 3 26 26 H 1.08998 * 109.47277 * 270.00388 * 3 2 1 27 27 H 1.09009 * 109.46737 * 30.00115 * 3 2 1 28 28 H 1.08999 * 109.47451 * 149.99824 * 3 2 1 29 29 H 1.07997 * 127.02032 * 0.03602 * 8 7 4 30 30 H 0.97001 * 120.00142 * 359.97438 * 12 10 9 31 31 H 0.97001 * 120.00450 * 180.02562 * 16 15 13 32 32 H 1.08004 * 125.80927 * 179.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.4113 -2.4067 0.5434 6 8 3.5759 -1.1570 0.5439 7 6 2.5538 -1.8851 -1.6838 8 6 3.6159 -1.5380 -2.4265 9 6 3.3963 -2.1372 -3.7511 10 6 4.2797 -2.0480 -4.9263 11 8 5.3213 -1.4234 -4.8583 12 7 3.9335 -2.6575 -6.0775 13 6 4.7547 -2.5741 -7.1704 14 1 5.6794 -2.0196 -7.1100 15 6 4.3979 -3.2031 -8.3573 16 7 3.2724 -3.8774 -8.4310 17 14 5.5176 -3.0888 -9.8482 18 1 6.7141 -2.2778 -9.5075 19 1 5.9434 -4.4525 -10.2531 20 1 4.7856 -2.4456 -10.9688 21 6 2.2026 -2.7933 -3.6639 22 8 1.7211 -2.6300 -2.4277 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 2.3792 1.5834 -1.0276 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5138 29 1 4.4599 -0.9406 -2.1149 30 1 3.1027 -3.1553 -6.1319 31 1 3.0236 -4.3167 -9.2593 32 1 1.7278 -3.3498 -4.4586 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319496266.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:29 Heat of formation + Delta-G solvation = -113.522650 kcal Electronic energy + Delta-G solvation = -20511.681966 eV Core-core repulsion = 16986.578103 eV Total energy + Delta-G solvation = -3525.103864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.69218 -40.03031 -38.61509 -37.27096 -37.08736 -36.16826 -34.16438 -33.39844 -31.33224 -28.98676 -27.37856 -25.68200 -24.47052 -23.36488 -21.69779 -20.46412 -19.96377 -19.32490 -18.69922 -17.52490 -17.33571 -17.25463 -17.08846 -16.52859 -15.92374 -15.53485 -15.47376 -15.41594 -14.84147 -14.42362 -14.17692 -13.88851 -13.64784 -13.60965 -13.44757 -13.33033 -13.00415 -12.87872 -12.68498 -12.57586 -12.50988 -12.13289 -11.68125 -11.16969 -10.75486 -10.41947 -10.17617 -10.13244 -8.60281 -6.06720 -1.00093 -0.04571 0.46640 1.40059 1.41251 1.54023 1.56300 1.90744 2.23921 2.31800 2.42268 3.01225 3.18022 3.24851 3.50423 3.67007 3.80437 4.14009 4.37623 4.49017 4.56100 4.62698 4.78339 4.86145 4.96067 4.99183 5.02414 5.31737 5.43107 5.53766 5.85857 6.42271 6.96580 7.34207 7.89752 8.56939 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.036728 B = 0.003648 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.173737 B = 7672.759504 C = 7882.870743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.990 5.990 3 C 0.068 3.932 4 S 2.744 3.256 5 O -0.957 6.957 6 O -0.954 6.954 7 C -0.583 4.583 8 C -0.053 4.053 9 C -0.250 4.250 10 C 0.494 3.506 11 O -0.636 6.636 12 N -0.548 5.548 13 C -0.339 4.339 14 H 0.084 0.916 15 C -0.004 4.004 16 N -0.908 5.908 17 Si 0.998 3.002 18 H -0.273 1.273 19 H -0.268 1.268 20 H -0.266 1.266 21 C 0.065 3.935 22 O -0.121 6.121 23 H 0.079 0.921 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.175 0.825 30 H 0.399 0.601 31 H 0.284 0.716 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.233 6.925 13.981 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.833 5.833 3 C -0.076 4.076 4 S 2.824 3.176 5 O -0.947 6.947 6 O -0.944 6.944 7 C -0.709 4.709 8 C -0.074 4.074 9 C -0.256 4.256 10 C 0.284 3.716 11 O -0.525 6.525 12 N -0.182 5.182 13 C -0.468 4.468 14 H 0.102 0.898 15 C -0.206 4.206 16 N -0.547 5.547 17 Si 0.821 3.179 18 H -0.198 1.198 19 H -0.193 1.193 20 H -0.191 1.191 21 C -0.009 4.009 22 O -0.014 6.014 23 H 0.097 0.903 24 H 0.119 0.881 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.131 0.869 28 H 0.100 0.900 29 H 0.192 0.808 30 H 0.234 0.766 31 H 0.094 0.906 32 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -9.664 6.637 14.619 18.739 hybrid contribution 0.529 -0.191 -1.874 1.956 sum -9.135 6.445 12.745 16.954 Atomic orbital electron populations 1.21896 0.75844 1.04842 1.04034 1.57176 1.16685 1.20958 1.88478 1.21989 0.97760 0.84359 1.03525 1.01101 0.72768 0.72852 0.70873 1.93560 1.66081 1.59860 1.75239 1.93607 1.41727 1.84994 1.74043 1.36032 1.00463 1.12634 1.21766 1.23028 0.97524 0.96261 0.90629 1.21856 0.98992 1.08591 0.96116 1.17306 0.86790 0.84508 0.83039 1.90579 1.28286 1.48741 1.84928 1.41744 1.21890 1.45314 1.09274 1.19800 1.04212 1.32938 0.89834 0.89838 1.26122 0.98287 0.94857 1.01335 1.69632 1.22829 1.32522 1.29741 0.84799 0.77783 0.78560 0.76780 1.19753 1.19325 1.19136 1.25535 0.92859 0.96299 0.86171 1.83897 1.42379 1.54848 1.20314 0.90283 0.88131 0.90879 0.91813 0.86916 0.90007 0.80768 0.76568 0.90649 0.73067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.29 127.77 1.31 2.26 16 2 N -0.99 -16.91 3.58 -562.68 -2.02 -18.92 16 3 C 0.07 0.89 10.66 127.77 1.36 2.25 16 4 S 2.74 68.04 5.80 -56.49 -0.33 67.72 16 5 O -0.96 -27.41 17.09 -127.90 -2.19 -29.60 16 6 O -0.95 -27.49 16.42 -128.00 -2.10 -29.59 16 7 C -0.58 -17.44 7.32 66.89 0.49 -16.95 16 8 C -0.05 -1.85 10.70 23.65 0.25 -1.60 16 9 C -0.25 -9.98 6.31 -19.00 -0.12 -10.10 16 10 C 0.49 24.98 7.76 86.62 0.67 25.65 16 11 O -0.64 -37.18 16.56 -4.16 -0.07 -37.25 16 12 N -0.55 -27.97 5.27 -310.08 -1.64 -29.60 16 13 C -0.34 -18.86 9.68 84.07 0.81 -18.05 16 14 H 0.08 4.99 7.15 -2.91 -0.02 4.97 16 15 C 0.00 -0.22 5.50 84.93 0.47 0.25 16 16 N -0.91 -46.29 13.05 21.67 0.28 -46.01 16 17 Si 1.00 41.09 29.55 68.60 2.03 43.12 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 20 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 21 C 0.07 2.04 11.61 67.41 0.78 2.83 16 22 O -0.12 -3.62 10.52 4.25 0.04 -3.57 16 23 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.10 0.74 8.07 -2.39 -0.02 0.72 16 25 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.11 0.78 8.07 -2.38 -0.02 0.76 16 28 H 0.08 1.18 7.02 -2.39 -0.02 1.16 16 29 H 0.17 5.85 8.06 -2.91 -0.02 5.83 16 30 H 0.40 18.50 6.87 -92.71 -0.64 17.86 16 31 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 32 H 0.25 6.01 7.47 -2.91 -0.02 5.98 16 Total: -1.00 -75.70 304.10 0.59 -75.11 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.54 Total: 22.06 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 6.04 Total: -13.46 kcal Atomic # 7 Polarization: -91.16 SS G_CDS: -3.37 Total: -94.53 kcal Atomic # 8 Polarization: -95.70 SS G_CDS: -4.31 Total: -100.01 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: 68.04 SS G_CDS: -0.33 Total: 67.72 kcal Total: -75.70 0.59 -75.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319496266.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.408 kcal (2) G-P(sol) polarization free energy of solvation -75.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds