Wall clock time and date at job start Tue Mar 31 2020 03:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47016 * 2 1 4 4 C 1.50707 * 109.46782 * 119.99146 * 2 1 3 5 5 H 1.08000 * 119.99590 * 119.99931 * 4 2 1 6 6 C 1.37868 * 120.00167 * 300.00249 * 4 2 1 7 7 N 1.31509 * 120.00434 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99951 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47107 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47028 * 119.99628 * 8 6 4 11 11 H 1.48494 * 109.47245 * 239.99901 * 8 6 4 12 12 N 1.46497 * 109.47253 * 239.99439 * 2 1 3 13 13 C 1.34776 * 119.99913 * 84.99982 * 12 2 1 14 14 O 1.21610 * 120.00102 * 0.02562 * 13 12 2 15 15 C 1.47377 * 119.99797 * 179.97438 * 13 12 2 16 16 C 1.36420 * 127.19579 * 359.68843 * 15 13 12 17 17 O 1.33645 * 108.40003 * 180.26038 * 16 15 13 18 18 C 1.34217 * 110.91082 * 359.97438 * 17 16 15 19 19 S 1.76196 * 125.44099 * 180.02562 * 18 17 16 20 20 N 1.65604 * 107.22001 * 270.00345 * 19 18 17 21 21 O 1.42097 * 106.40108 * 23.53811 * 19 18 17 22 22 O 1.42101 * 106.40434 * 156.46261 * 19 18 17 23 23 C 1.34176 * 109.12237 * 0.02562 * 18 17 16 24 24 H 1.09007 * 109.47008 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47316 * 300.00471 * 1 2 3 26 26 H 1.09001 * 109.46580 * 60.00670 * 1 2 3 27 27 H 0.97004 * 120.00534 * 179.97438 * 7 6 4 28 28 H 0.97006 * 119.99686 * 265.00256 * 12 2 1 29 29 H 1.08007 * 125.79896 * 0.23549 * 16 15 13 30 30 H 0.96998 * 120.00356 * 149.99510 * 20 19 18 31 31 H 0.97001 * 119.99755 * 330.00009 * 20 19 18 32 32 H 1.08001 * 127.02855 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.1463 -2.2867 3.6041 10 1 3.1465 -0.1869 4.8166 11 1 1.1659 -1.5862 4.8162 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0185 -2.3571 14 8 1.8583 1.1616 -2.4117 15 6 2.6389 -0.7132 -3.5602 16 6 3.0092 -2.0221 -3.6632 17 8 3.3992 -2.2525 -4.9206 18 6 3.3015 -1.1393 -5.6640 19 16 3.7148 -1.0119 -7.3720 20 7 5.3131 -0.5872 -7.4593 21 8 3.6188 -2.3248 -7.9071 22 8 2.9782 0.0911 -7.8820 23 6 2.8388 -0.1390 -4.8988 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5137 -0.8901 27 1 0.7088 1.1617 3.4843 28 1 2.2491 -1.6319 -1.1524 29 1 2.9908 -2.7487 -2.8642 30 1 5.8499 -0.8716 -8.2155 31 1 5.7124 -0.0541 -6.7542 32 1 2.6515 0.8800 -5.2038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319730020.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:21 Heat of formation + Delta-G solvation = -129.091773 kcal Electronic energy + Delta-G solvation = -20216.667442 eV Core-core repulsion = 16690.888450 eV Total energy + Delta-G solvation = -3525.778992 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.80471 -40.44017 -38.43027 -37.13542 -36.78839 -34.58704 -34.16288 -34.04860 -31.91434 -30.37236 -27.36803 -25.28020 -23.58492 -22.68176 -21.61131 -20.66878 -20.12988 -18.60083 -18.43997 -17.98594 -17.34567 -17.28362 -17.11265 -16.88067 -16.39115 -15.96251 -15.72857 -14.91124 -14.55394 -14.49261 -13.91930 -13.75768 -13.42238 -13.36109 -13.28421 -13.05165 -12.92861 -12.85343 -12.74013 -12.30575 -12.12407 -11.46501 -11.26843 -11.13281 -11.07884 -10.63019 -10.48920 -9.84942 -8.18914 -6.36860 -0.90802 -0.09290 0.36453 1.45642 1.46755 1.55427 1.58605 2.06335 2.25468 2.32710 2.50082 2.55718 3.12536 3.35502 3.53322 3.61635 4.09970 4.12177 4.57647 4.70423 4.79866 4.89059 5.05687 5.22469 5.38513 5.42838 5.54558 5.64360 5.85411 6.05855 6.30312 6.69724 6.83658 7.27640 7.43075 8.87889 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.040256 B = 0.003271 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.375462 B = 8559.284147 C = 8879.672034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.270 3.730 3 H 0.001 0.999 4 C -0.546 4.546 5 H 0.080 0.920 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.256 1.256 10 H -0.286 1.286 11 H -0.281 1.281 12 N -0.694 5.694 13 C 0.570 3.430 14 O -0.597 6.597 15 C -0.276 4.276 16 C 0.100 3.900 17 O -0.117 6.117 18 C -0.580 4.580 19 S 2.773 3.227 20 N -1.224 6.224 21 O -0.973 6.973 22 O -0.965 6.965 23 C -0.044 4.044 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.010 0.990 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.269 0.731 30 H 0.437 0.563 31 H 0.431 0.569 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.186 -8.316 -16.739 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.167 3.833 3 H 0.019 0.981 4 C -0.584 4.584 5 H 0.098 0.902 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.180 1.180 10 H -0.212 1.212 11 H -0.206 1.206 12 N -0.342 5.342 13 C 0.358 3.642 14 O -0.480 6.480 15 C -0.281 4.281 16 C 0.026 3.974 17 O -0.009 6.009 18 C -0.707 4.707 19 S 2.851 3.149 20 N -0.907 5.907 21 O -0.962 6.962 22 O -0.954 6.954 23 C -0.066 4.066 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.243 0.757 29 H 0.284 0.716 30 H 0.271 0.729 31 H 0.262 0.738 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 9.229 -7.864 -17.391 21.201 hybrid contribution 0.339 0.235 1.950 1.993 sum 9.568 -7.630 -15.441 19.702 Atomic orbital electron populations 1.21928 0.98239 0.99716 0.99619 1.18426 0.91179 0.92132 0.81575 0.98097 1.21558 1.32681 1.13700 0.90423 0.90242 1.25817 0.94830 0.95549 1.02441 1.70060 1.36988 1.23981 1.24638 0.85259 0.78028 0.78538 0.78256 1.17984 1.21176 1.20632 1.46092 1.64776 1.14182 1.09178 1.17681 0.77518 0.85999 0.82998 1.90737 1.53643 1.17812 1.85773 1.21763 1.14843 0.96286 0.95244 1.25830 0.89770 0.96121 0.85701 1.83953 1.65094 1.32754 1.19140 1.35456 1.23681 0.90289 1.21263 0.99964 0.72981 0.72761 0.69165 1.52637 1.30414 1.71046 1.36574 1.93576 1.86367 1.40193 1.76105 1.93670 1.72148 1.55345 1.74284 1.23192 0.92190 1.00707 0.90462 0.93737 0.91332 0.97099 0.92531 0.75694 0.71572 0.72859 0.73807 0.80317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.78 9.26 71.98 0.67 -6.11 16 2 C 0.27 13.57 2.56 44.25 0.11 13.68 16 3 H 0.00 0.07 7.58 -2.39 -0.02 0.05 16 4 C -0.55 -27.51 8.73 25.60 0.22 -27.29 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -51.56 11.32 21.44 0.24 -51.32 16 8 Si 0.97 40.38 29.54 68.60 2.03 42.41 16 9 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 10 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 12 N -0.69 -27.20 5.06 -449.41 -2.27 -29.47 16 13 C 0.57 22.71 7.78 86.65 0.67 23.39 16 14 O -0.60 -29.71 16.65 -4.06 -0.07 -29.78 16 15 C -0.28 -8.05 6.31 -18.99 -0.12 -8.17 16 16 C 0.10 1.99 11.61 67.40 0.78 2.77 16 17 O -0.12 -2.39 10.52 4.52 0.05 -2.34 16 18 C -0.58 -12.14 7.32 66.89 0.49 -11.65 16 19 S 2.77 46.36 6.43 -56.49 -0.36 46.00 16 20 N -1.22 -9.23 9.52 37.02 0.35 -8.88 16 21 O -0.97 -21.89 18.02 -127.90 -2.30 -24.20 16 22 O -0.97 -22.38 17.82 -128.00 -2.28 -24.66 16 23 C -0.04 -1.14 10.70 23.65 0.25 -0.89 16 24 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 26 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.41 12.26 7.51 -92.70 -0.70 11.57 16 29 H 0.27 2.68 7.47 -2.91 -0.02 2.66 16 30 H 0.44 1.41 8.96 -96.74 -0.87 0.55 16 31 H 0.43 1.71 8.96 -96.74 -0.87 0.84 16 32 H 0.18 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -80.90 302.72 -2.31 -83.21 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -1.22 Total: 12.14 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 3.53 Total: -13.11 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -1.68 Total: -89.67 kcal Atomic # 8 Polarization: -76.37 SS G_CDS: -4.61 Total: -80.98 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 16 Polarization: 46.36 SS G_CDS: -0.36 Total: 46.00 kcal Total: -80.90 -2.31 -83.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319730020.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.885 kcal (2) G-P(sol) polarization free energy of solvation -80.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds