Wall clock time and date at job start Tue Mar 31 2020 03:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99943 * 2 1 4 4 C 1.50709 * 109.46960 * 270.00259 * 3 2 1 5 5 H 1.08001 * 119.99911 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99856 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99761 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99868 * 180.02562 * 6 4 3 9 9 H 1.48491 * 109.47402 * 89.99582 * 8 6 4 10 10 H 1.48503 * 109.46906 * 209.99710 * 8 6 4 11 11 H 1.48502 * 109.46830 * 329.99347 * 8 6 4 12 12 C 1.34779 * 119.99949 * 180.02562 * 2 1 3 13 13 O 1.21607 * 119.99763 * 181.53553 * 12 2 1 14 14 C 1.47376 * 119.99733 * 1.53532 * 12 2 1 15 15 C 1.36410 * 127.19485 * 346.30415 * 14 12 2 16 16 O 1.33659 * 108.39836 * 180.02562 * 15 14 12 17 17 C 1.34215 * 110.90497 * 359.97438 * 16 15 14 18 18 S 1.76197 * 125.43244 * 179.97438 * 17 16 15 19 19 N 1.65599 * 107.22047 * 270.02652 * 18 17 16 20 20 O 1.42102 * 106.40455 * 23.56831 * 18 17 16 21 21 O 1.42105 * 106.39981 * 156.48770 * 18 17 16 22 22 C 1.34174 * 109.12656 * 0.02562 * 17 16 15 23 23 H 1.09005 * 109.46749 * 264.03907 * 1 2 3 24 24 H 1.09003 * 109.47002 * 24.03212 * 1 2 3 25 25 H 1.08991 * 109.47689 * 144.03765 * 1 2 3 26 26 H 1.08997 * 109.47441 * 30.00258 * 3 2 1 27 27 H 1.08995 * 109.46827 * 150.00804 * 3 2 1 28 28 H 0.97001 * 119.99120 * 179.97438 * 7 6 4 29 29 H 1.08004 * 125.80511 * 0.04045 * 15 14 12 30 30 H 0.97003 * 119.99846 * 150.00359 * 19 18 17 31 31 H 0.96998 * 120.00060 * 330.00333 * 19 18 17 32 32 H 1.08002 * 127.02062 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2418 6 6 3.1268 2.8775 -1.6729 7 7 3.5541 3.6176 -0.6732 8 14 3.4374 3.4171 -3.4340 9 1 2.3076 4.2606 -3.8999 10 1 4.6981 4.1995 -3.4970 11 1 3.5537 2.2201 -4.3052 12 6 2.1389 -1.1672 -0.0005 13 8 3.3546 -1.1674 0.0277 14 6 1.4023 -2.4433 -0.0353 15 6 0.0701 -2.6328 0.1885 16 8 -0.1975 -3.9363 0.0628 17 6 0.9134 -4.6264 -0.2388 18 16 0.9975 -6.3684 -0.4891 19 7 1.3097 -7.0606 0.9826 20 8 -0.3101 -6.7843 -0.8588 21 8 2.1445 -6.6032 -1.2944 22 6 1.9499 -3.7781 -0.3182 23 1 -0.3633 -0.1067 1.0222 24 1 -0.3633 0.9386 -0.4185 25 1 -0.3634 -0.8317 -0.6034 26 1 1.6085 2.0284 0.5138 27 1 3.1499 1.1384 0.5137 28 1 4.0316 4.4431 -0.8506 29 1 -0.6467 -1.8608 0.4266 30 1 0.9825 -7.9526 1.1782 31 1 1.8198 -6.5742 1.6489 32 1 2.9767 -4.0252 -0.5445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319733708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:19 Heat of formation + Delta-G solvation = -70.770719 kcal Electronic energy + Delta-G solvation = -20487.666336 eV Core-core repulsion = 16964.416335 eV Total energy + Delta-G solvation = -3523.250001 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.77836 -38.91319 -37.51698 -36.22066 -35.11573 -33.60029 -33.26885 -32.59814 -30.62627 -27.80452 -26.48181 -23.98690 -22.56825 -21.97451 -20.34865 -19.55369 -18.11888 -17.83962 -17.10479 -16.67225 -16.51902 -16.26140 -15.87911 -15.31089 -15.12670 -14.52401 -14.25783 -13.60639 -13.25762 -12.83095 -12.63608 -12.57127 -12.47249 -12.35431 -12.25804 -11.86560 -11.69160 -11.25780 -10.97494 -10.91654 -10.65449 -10.23600 -10.14779 -9.76852 -9.36283 -9.26976 -8.51142 -7.85872 -6.12430 -4.17881 -0.09434 0.89536 1.59073 2.47977 2.90148 3.26190 3.27616 3.33335 3.37715 3.63121 3.84394 4.36163 4.38784 4.49056 4.57599 5.03558 5.15614 5.22654 5.29275 5.51001 5.55566 5.59107 5.85960 5.97066 6.47779 6.63820 6.89555 7.29195 7.36753 7.83277 8.11809 8.17927 8.75764 8.90887 9.47775 10.95718 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.031675 B = 0.003671 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.775632 B = 7626.211444 C = 7873.238609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.592 5.592 3 C 0.246 3.754 4 C -0.532 4.532 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.571 3.429 13 O -0.531 6.531 14 C -0.233 4.233 15 C 0.039 3.961 16 O -0.124 6.124 17 C -0.593 4.593 18 S 2.741 3.259 19 N -1.245 6.245 20 O -0.948 6.948 21 O -0.937 6.937 22 C -0.028 4.028 23 H 0.052 0.948 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.047 0.953 28 H 0.265 0.735 29 H 0.241 0.759 30 H 0.423 0.577 31 H 0.420 0.580 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.344 -17.788 5.863 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.324 5.324 3 C 0.127 3.873 4 C -0.571 4.571 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.357 3.643 13 O -0.409 6.409 14 C -0.239 4.239 15 C -0.034 4.034 16 O -0.018 6.018 17 C -0.721 4.721 18 S 2.822 3.178 19 N -0.921 5.921 20 O -0.937 6.937 21 O -0.926 6.926 22 C -0.050 4.050 23 H 0.071 0.929 24 H 0.105 0.895 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.257 0.743 30 H 0.255 0.745 31 H 0.248 0.752 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.026 -18.030 4.975 20.768 hybrid contribution 0.460 1.195 -0.234 1.302 sum -8.566 -16.835 4.741 19.475 Atomic orbital electron populations 1.22221 0.82141 1.03949 1.00084 1.48038 1.05950 1.07658 1.70706 1.19398 0.92690 0.77345 0.97848 1.21421 1.37010 1.06493 0.92127 0.92353 1.24932 0.95142 0.96291 0.97621 1.69928 1.38126 1.14341 1.30825 0.86464 0.77751 0.78640 0.84404 1.20564 1.20979 1.19833 1.17081 0.86892 0.82027 0.78256 1.90781 1.12957 1.86818 1.50320 1.22143 0.94002 0.95804 1.11925 1.26382 0.97330 0.83903 0.95756 1.83943 1.32257 1.18256 1.67330 1.35183 0.90601 1.21425 1.24938 1.00944 0.73977 0.70549 0.72335 1.53072 1.72638 1.29711 1.36637 1.93608 1.39258 1.79784 1.81098 1.93699 1.51798 1.82098 1.65033 1.23091 0.99940 0.90332 0.91648 0.92925 0.89485 0.91638 0.94551 0.93448 0.92584 0.74347 0.74529 0.75249 0.80410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.84 8.78 59.85 0.53 1.36 16 2 N -0.59 -12.12 2.86 -184.25 -0.53 -12.64 16 3 C 0.25 6.24 5.15 -5.19 -0.03 6.21 16 4 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.57 11.98 7.67 -12.54 -0.10 11.88 16 13 O -0.53 -13.44 16.57 5.27 0.09 -13.35 16 14 C -0.23 -3.76 6.10 -103.28 -0.63 -4.39 16 15 C 0.04 0.48 9.99 30.07 0.30 0.78 16 16 O -0.12 -1.52 10.52 7.63 0.08 -1.44 16 17 C -0.59 -7.12 7.32 29.30 0.21 -6.91 16 18 S 2.74 26.52 6.43 -107.50 -0.69 25.82 16 19 N -1.24 -6.53 9.52 60.35 0.57 -5.96 16 20 O -0.95 -11.89 18.02 -57.28 -1.03 -12.92 16 21 O -0.94 -11.87 17.82 -57.17 -1.02 -12.89 16 22 C -0.03 -0.40 10.73 -37.45 -0.40 -0.81 16 23 H 0.05 0.56 7.62 -51.93 -0.40 0.17 16 24 H 0.09 1.25 8.03 -51.93 -0.42 0.84 16 25 H 0.07 0.76 4.95 -51.93 -0.26 0.50 16 26 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 27 H 0.05 1.36 7.40 -51.93 -0.38 0.97 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.24 2.03 4.64 -52.48 -0.24 1.78 16 30 H 0.42 1.34 8.96 -34.47 -0.31 1.03 16 31 H 0.42 1.46 8.96 -34.47 -0.31 1.16 16 32 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 299.28 15.07 4.51 4.51 Total: -1.00 -39.05 299.28 -5.54 -44.59 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -2.70 Total: -1.64 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -0.54 Total: -5.37 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.78 Total: -43.95 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -1.88 Total: -40.60 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 26.52 SS G_CDS: -0.69 Total: 25.82 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -39.05 -5.54 -44.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319733708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.181 kcal (2) G-P(sol) polarization free energy of solvation -39.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds